Rh2CG220400

Choline kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002182
Physical Location & Seq
Forward (+)
22010696 .. 22012514
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG220400.1

Sequence Viewer

Length: 564 bp
ATGGGTGCCATGGTGAATTCCATAGATAAAGACGACCGTATTCCAAAAGAAGCCAAGGAGATTCTACAATCATTGGCTACCAAGTGGGAAAATGTAGGTGATTCCACTGCCTTGCAGGTCATCCCTCTCAAGGGTGCAATGACTAACGAGGTGTTCGAAATAAAGTGGCCAACAAGCACCGGGGAAGTCTCCCGAAAGGTTGTGGTTAGGATTTACGGTGAGGGTGTTGAGGTGTTCTTTGACAGGGATAATGAGATCCGAACATTTGAATACATGTCAAAGAACGGTCAGGGACCTCGTTTGCTTGGCCGTTTTCCTAATGGCCGAGTTGAAGAGTTCATCCATGCACGGACACTTTCAGCATCTGATCTACGTGATCCAGATATATCTGCTCTTATAGCTACTAAAATGAAGGAATTCCATGATCTTGAGATGCCCGGTCCAAAGGATCTTTGTGCAACCTTTGCTTGTGGTATTTACCAATACTTGCGTGCGTCTGAGGTGAAGAAAAGGCCTTCCACAGATTACATGGCTTGTGGAGGGATTGTTTGGTGGAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01100 ko03010 ko05231 map00564 map01100 map03010 map05231
Pfam Domains
Protein Families
Choline_kin_N Choline_kinase

Protein Analysis

187

Amino Acids

21.13

Weight (kDa)

6.18

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Choline_kinase PF01633 41 - 155 2.9e-36 Choline/ethanolamine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 5
AclWI GGATC 3 cut(s) 250, 371, 456
AcoI YGGCCR 3 cut(s) 167, 307, 322
AcsI RAATTY 2 cut(s) 16, 416
AfiI CCNNNNNNNGG 2 cut(s) 130, 131
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 2 cut(s) 269, 332
AluBI AGCT 1 cut(s) 401
AluI AGCT 1 cut(s) 401
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 3 cut(s) 250, 371, 456
AlwNI CAGNNNCTG 1 cut(s) 365
AoxI GGCC 4 cut(s) 167, 307, 322, 512
ApoI RAATTY 2 cut(s) 16, 416
Asp700I GAANNNNTTC 1 cut(s) 416
AspS9I GGNCC 2 cut(s) 293, 440
AsuC2I CCSGG 2 cut(s) 181, 438
AsuHPI GGTGA 4 cut(s) 25, 110, 230, 514
AsuII TTCGAA 1 cut(s) 156
AvaII GGWCC 2 cut(s) 293, 440
BalI TGGCCA 1 cut(s) 169
BanI GGYRCC 1 cut(s) 5
BceAI ACGGC 1 cut(s) 294
BcnI CCSGG 2 cut(s) 181, 438
BcoDI GTCTC 1 cut(s) 193
BfuAI ACCTGC 1 cut(s) 106
Bme1390I CCNGG 2 cut(s) 181, 438
Bme18I GGWCC 2 cut(s) 293, 440
BmgT120I GGNCC 2 cut(s) 293, 440
BmiI GGNNCC 2 cut(s) 7, 294
BmrFI CCNGG 2 cut(s) 181, 438
BmsI GCATC 2 cut(s) 371, 423
Bpu14I TTCGAA 1 cut(s) 156
BpuEI CTTGAG 2 cut(s) 113, 449
BpuMI CCSGG 2 cut(s) 181, 438
BsaAI YACGTR 1 cut(s) 374
BsaJI CCNNGG 3 cut(s) 9, 54, 180
BsaXI ACNNNNNCTCC 2 cut(s) 531, 561
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 131
Bse3DI GCAATG 1 cut(s) 144
BseDI CCNNGG 3 cut(s) 9, 54, 180
BseGI GGATG 2 cut(s) 120, 339
BseLI CCNNNNNNNGG 2 cut(s) 130, 131
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 489
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 4 cut(s) 169, 309, 324, 514
BshNI GGYRCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 37
BsiSI CCGG 2 cut(s) 180, 438
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 2 cut(s) 130, 131
BsmAI GTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 306
BsnI GGCC 4 cut(s) 169, 309, 324, 514
Bsp119I TTCGAA 1 cut(s) 156
Bsp143I GATC 5 cut(s) 255, 367, 376, 424, 448
Bsp19I CCATGG 1 cut(s) 9
BspANI GGCC 4 cut(s) 169, 309, 324, 514
BspCNI CTCAG 1 cut(s) 490
BspLI GGNNCC 2 cut(s) 7, 294
BspMI ACCTGC 1 cut(s) 106
BspPI GGATC 3 cut(s) 250, 371, 456
BspT104I TTCGAA 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 5
BsrDI GCAATG 1 cut(s) 144
BssECI CCNNGG 3 cut(s) 9, 54, 180
BssMI GATC 5 cut(s) 255, 367, 376, 424, 448
BssT1I CCWWGG 2 cut(s) 9, 54
Bst4CI ACNGT 3 cut(s) 38, 218, 287
Bst6I CTCTTC 1 cut(s) 327
BstAPI GCANNNNNTGC 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 374
BstBI TTCGAA 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 492
BstDEI CTNAG 1 cut(s) 498
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 120, 339
BstKTI GATC 5 cut(s) 258, 370, 379, 427, 451
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 5 cut(s) 255, 367, 376, 424, 448
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 2 cut(s) 398, 464
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 2 cut(s) 179, 436
BstX2I RGATCY 2 cut(s) 255, 448
BstYI RGATCY 2 cut(s) 255, 448
BsuRI GGCC 4 cut(s) 169, 309, 324, 514
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 2 cut(s) 120, 339
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 492
CaiI CAGNNNCTG 1 cut(s) 365
Cfr13I GGNCC 2 cut(s) 293, 440
CseI GACGC 1 cut(s) 483
CviAII CATG 5 cut(s) 10, 274, 344, 422, 529
CviJI RGCY 8 cut(s) 53, 77, 169, 309, 324, 401, 514, 533
CviKI_1 RGCY 8 cut(s) 53, 77, 169, 309, 324, 401, 514, 533
DdeI CTNAG 1 cut(s) 498
DpnI GATC 5 cut(s) 257, 369, 378, 426, 450
DpnII GATC 5 cut(s) 255, 367, 376, 424, 448
EaeI YGGCCR 3 cut(s) 167, 307, 322
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Eco130I CCWWGG 2 cut(s) 9, 54
Eco147I AGGCCT 1 cut(s) 514
Eco47I GGWCC 2 cut(s) 293, 440
EcoO109I RGGNCCY 1 cut(s) 293
EcoRI GAATTC 2 cut(s) 16, 416
EcoT14I CCWWGG 2 cut(s) 9, 54
ErhI CCWWGG 2 cut(s) 9, 54
FaeI CATG 5 cut(s) 13, 277, 347, 425, 532
FaiI YATR 8 cut(s) 11, 23, 275, 345, 386, 398, 423, 530
FaqI GGGAC 1 cut(s) 306
FatI CATG 5 cut(s) 9, 273, 343, 421, 528
FokI GGATG 2 cut(s) 107, 326
HaeIII GGCC 4 cut(s) 169, 309, 324, 514
HapII CCGG 2 cut(s) 180, 438
HgaI GACGC 1 cut(s) 483
Hin1II CATG 5 cut(s) 13, 277, 347, 425, 532
HinfI GANTC 2 cut(s) 61, 101
HpaII CCGG 2 cut(s) 180, 438
HphI GGTGA 4 cut(s) 25, 110, 230, 514
Hpy188I TCNGA 3 cut(s) 260, 367, 499
Hpy188III TCNNGA 3 cut(s) 192, 380, 428
HpyAV CCTTC 2 cut(s) 406, 525
HpyCH4III ACNGT 3 cut(s) 38, 218, 287
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 4 cut(s) 115, 137, 347, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 464
HpyF3I CTNAG 1 cut(s) 498
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 5 cut(s) 13, 277, 347, 425, 532
Kzo9I GATC 5 cut(s) 255, 367, 376, 424, 448
LpnPI CCDG 6 cut(s) 101, 193, 229, 275, 393, 451
LweI GCATC 2 cut(s) 371, 423
MaeII ACGT 1 cut(s) 373
MalI GATC 5 cut(s) 257, 369, 378, 426, 450
MboI GATC 5 cut(s) 255, 367, 376, 424, 448
MboII GAAGA 2 cut(s) 344, 517
MflI RGATCY 2 cut(s) 255, 448
MlsI TGGCCA 1 cut(s) 169
MluCI AATT 2 cut(s) 16, 416
MluNI TGGCCA 1 cut(s) 169
MnlI CCTC 7 cut(s) 135, 142, 214, 223, 306, 493, 533
Mox20I TGGCCA 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 416
MscI TGGCCA 1 cut(s) 169
Msp20I TGGCCA 1 cut(s) 169
MspI CCGG 2 cut(s) 180, 438
MspR9I CCNGG 2 cut(s) 181, 438
MwoI GCNNNNNNNGC 2 cut(s) 398, 464
NciI CCSGG 2 cut(s) 181, 438
NcoI CCATGG 1 cut(s) 9
NdeII GATC 5 cut(s) 255, 367, 376, 424, 448
NlaIII CATG 5 cut(s) 13, 277, 347, 425, 532
NlaIV GGNNCC 2 cut(s) 7, 294
NmeAIII GCCGAG 1 cut(s) 350
NspI RCATGY 1 cut(s) 277
NspV TTCGAA 1 cut(s) 156
PceI AGGCCT 1 cut(s) 514
PciI ACATGT 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 2 cut(s) 61, 101
Ppu21I YACGTR 1 cut(s) 374
PpuMI RGGWCCY 1 cut(s) 293
PscI ACATGT 1 cut(s) 273
Psp5II RGGWCCY 1 cut(s) 293
PspN4I GGNNCC 2 cut(s) 7, 294
PspPI GGNCC 2 cut(s) 293, 440
PspPPI RGGWCCY 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 365
PsuI RGATCY 2 cut(s) 255, 448
Sau3AI GATC 5 cut(s) 255, 367, 376, 424, 448
Sau96I GGNCC 2 cut(s) 293, 440
ScrFI CCNGG 2 cut(s) 181, 438
SfaNI GCATC 2 cut(s) 371, 423
SfuI TTCGAA 1 cut(s) 156
SinI GGWCC 2 cut(s) 293, 440
SmlI CTYRAG 2 cut(s) 128, 428
SmoI CTYRAG 2 cut(s) 128, 428
Sse9I AATT 2 cut(s) 16, 416
SseBI AGGCCT 1 cut(s) 514
StuI AGGCCT 1 cut(s) 514
StyD4I CCNGG 2 cut(s) 179, 436
StyI CCWWGG 2 cut(s) 9, 54
TaaI ACNGT 3 cut(s) 38, 218, 287
TaiI ACGT 1 cut(s) 376
TaqI TCGA 1 cut(s) 156
TasI AATT 2 cut(s) 16, 416
TfiI GAWTC 2 cut(s) 61, 101
TscAI CASTG 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 328, 425
TspGWI ACGGA 1 cut(s) 364
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 293, 440
XapI RAATTY 2 cut(s) 16, 416
XceI RCATGY 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XmnI GAANNNNTTC 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.