Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002182

Physical Location & Seq

Genomic Coordinates Reverse (-)

14785658 .. 14790359

Gene Structure 4702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG086400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTATTACATCTTTCTTTTCACTTGTGAATTTCAGACACTTTCAGCATCTGATCTACGTGATCCAGATATATCTGCTCTTATAGCTACTAAAATGAAGGAATTCCATGATCTTGAGATGCCCGGTCCAAAGGATGTCGTCCTCTGGGGCAGATTGAGAAATTGGCTGAGTACAGCCAAGAGATTGTGTAGTCCAGAAGAAGCTAATGAATTTCAGTTAGATTCCATTGAAAAGGAAATCTCTATACTGGAGAAGGAGCTCTCAGTACTGAATCAGCAGTTAGGTTTCTGCCACAATGATTTACAGTATGGAAACATAATGATTGAGGAAGAGAGTAAAACGATTACGATAATTGACTATGAGTATGCAAGTTATAATCCTGTTGCATTTGACATAGCAAACCATTTCTGTGAGATGGCGGCTGACTATCACACAGATACCCCTCATATTTTAGACTACAGTAAATATCCTGGCTTAGAGGAGCGCAAGAGGTTTGTTCGTATGTATCTGAGTTCTTCAGGCAATCAACCTAGTGACAAAGAAGTGGAGCAGCTAGTTGAAGATGTTGAGAAGTATACCCTTGCAGACCATCTGTTCTGGGGCTTATGGGGAATAATATCGGAACATGTGAATGATATTGATTTTGACTACATGCAATATGCAAAGCAGAGGTTTCAACAGTACTGGAGAACCAAGGCTTTGCTATTGGGTTCTGTTGGATCTTCCCCAGACACAGGGACTGATGGTAACCGTACTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko03010 ko05231 map00564 map01100 map03010 map05231

Pfam Domains

Protein Families

Choline_kin_N Choline_kinase

Protein Analysis

253

Amino Acids

29.39

Weight (kDa)

4.66

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_kinase	PF01633	12 - 229	8.2e-73	Choline/ethanolamine kinase
APH	PF01636	52 - 136	3.4e-10	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74320
fragaria_vesca	FvH4_7g03960 FvH4_7g03960
malus_domestica	MD00G1152700.v1.1 MD07G1043500.v1.1
prunus_persica	Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1
pyrus_communis	pycom02g23640 pycom07g03090
rosa_chinensis	RchiOBHm_Chr1g0327661 RchiOBHm_Chr1g0347241 RchiOBHm_Chr2g0110271 RchiOBHm_Chr4g0418131
rosa_laevigata	RLG00000029977
rosa_multiflora	Rmu_sc0000279.1_g000036 Rmu_sc0000869.1_g000001 Rmu_sc0043133.1_g000001 Rmu_ssc0000042.1_g000005
rosa_roxburghii	Rroxscaffold_4G00322480
rosa_rugosa	Rorug01G0069200 Rorug01G0069300
rosa_samantha	Rh1AG086400 Rh1CG083900 Rh1CG275300 Rh1DG090300 Rh2CG220400 Rh3CG286700 Rh5AG054300 Rh5AG520300 Rh7DG159000 Rh7DG257900
rosa_wichuraiana	Rw1G006740 Rw3G022890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AccI	GTMKAC	1 cut(s)	575
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	2 cut(s)	56, 727
AcsI	RAATTY	3 cut(s)	29, 101, 209
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	4 cut(s)	172, 267, 683, 754
AfiI	CCNNNNNNNGG	1 cut(s)	734
AflIII	ACRYGT	1 cut(s)	625
AgsI	TTSAA	3 cut(s)	230, 560, 677
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	4 cut(s)	86, 203, 259, 553
AluI	AGCT	4 cut(s)	86, 203, 259, 553
Alw21I	GWGCWC	1 cut(s)	261
AlwI	GGATC	2 cut(s)	56, 727
AlwNI	CAGNNNCTG	2 cut(s)	50, 740
ApeKI	GCWGC	1 cut(s)	550
ApoI	RAATTY	3 cut(s)	29, 101, 209
Asp700I	GAANNNNTTC	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	3 cut(s)	409, 597, 737
BciT130I	CCWGG	1 cut(s)	471
BcnI	CCSGG	1 cut(s)	123
BfaI	CTAG	2 cut(s)	531, 554
BfmI	CTRYAG	1 cut(s)	457
BisI	GCNGC	2 cut(s)	420, 551
BlsI	GCNGC	2 cut(s)	421, 552
BmcAI	AGTACT	2 cut(s)	267, 683
Bme1390I	CCNGG	2 cut(s)	123, 471
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	123, 471
BmsI	GCATC	2 cut(s)	56, 108
BpmI	CTGGAG	2 cut(s)	269, 706
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	693
Bsc4I	CCNNNNNNNGG	1 cut(s)	734
Bse1I	ACTGG	2 cut(s)	252, 689
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	1 cut(s)	693
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	734
BseMII	CTCAG	3 cut(s)	158, 276, 500
BseNI	ACTGG	2 cut(s)	252, 689
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	1 cut(s)	562
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	751
BslI	CCNNNNNNNGG	1 cut(s)	734
BsmFI	GGGAC	1 cut(s)	751
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	4 cut(s)	52, 61, 109, 719
BspACI	CCGC	1 cut(s)	419
BspCNI	CTCAG	3 cut(s)	159, 275, 501
BspPI	GGATC	2 cut(s)	56, 727
BsrI	ACTGG	2 cut(s)	252, 689
BssECI	CCNNGG	1 cut(s)	693
BssMI	GATC	4 cut(s)	52, 61, 109, 719
BssNAI	GTATAC	1 cut(s)	576
BssT1I	CCWWGG	1 cut(s)	693
Bst1107I	GTATAC	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	4 cut(s)	306, 461, 681, 752
Bst6I	CTCTTC	1 cut(s)	324
BstBAI	YACGTR	1 cut(s)	59
BstDEI	CTNAG	5 cut(s)	167, 262, 475, 509, 759
BstEII	GGTNACC	1 cut(s)	746
BstF5I	GGATG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	486
BstKTI	GATC	4 cut(s)	55, 64, 112, 722
BstMBI	GATC	4 cut(s)	52, 61, 109, 719
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	471
BstNSI	RCATGY	2 cut(s)	629, 655
BstPI	GGTNACC	1 cut(s)	746
BstSCI	CCNGG	2 cut(s)	121, 469
BstSFI	CTRYAG	1 cut(s)	457
BstV1I	GCAGC	1 cut(s)	562
BstX2I	RGATCY	1 cut(s)	719
BstYI	RGATCY	1 cut(s)	719
BstZ17I	GTATAC	1 cut(s)	576
BtsCI	GGATG	1 cut(s)	139
CaiI	CAGNNNCTG	2 cut(s)	50, 740
CfoI	GCGC	1 cut(s)	486
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	4 cut(s)	171, 266, 682, 753
CviAII	CATG	3 cut(s)	107, 626, 652
CviQI	GTAC	4 cut(s)	171, 266, 682, 753
DdeI	CTNAG	5 cut(s)	167, 262, 475, 509, 759
DpnI	GATC	4 cut(s)	54, 63, 111, 721
DpnII	GATC	4 cut(s)	52, 61, 109, 719
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	693
Eco24I	GRGCYC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	125
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	501
Eco91I	GGTNACC	1 cut(s)	746
EcoICRI	GAGCTC	1 cut(s)	259
EcoO65I	GGTNACC	1 cut(s)	746
EcoRI	GAATTC	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	693
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	693
FaeI	CATG	3 cut(s)	110, 629, 655
FaqI	GGGAC	1 cut(s)	751
FatI	CATG	3 cut(s)	106, 625, 651
FblI	GTMKAC	1 cut(s)	575
Fnu4HI	GCNGC	2 cut(s)	420, 551
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	420, 551
FspBI	CTAG	2 cut(s)	531, 554
GlaI	GCGC	1 cut(s)	485
GluI	GCNGC	2 cut(s)	420, 551
GsuI	CTGGAG	2 cut(s)	269, 706
HapII	CCGG	1 cut(s)	123
HhaI	GCGC	1 cut(s)	486
Hin1II	CATG	3 cut(s)	110, 629, 655
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HinfI	GANTC	2 cut(s)	221, 271
HpaII	CCGG	1 cut(s)	123
Hpy166II	GTNNAC	1 cut(s)	576
Hpy188I	TCNGA	4 cut(s)	36, 52, 510, 622
Hpy188III	TCNNGA	3 cut(s)	65, 113, 194
Hpy8I	GTNNAC	1 cut(s)	576
HpyAV	CCTTC	2 cut(s)	91, 247
HpyCH4III	ACNGT	4 cut(s)	306, 461, 681, 752
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	5 cut(s)	368, 386, 584, 655, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	5 cut(s)	167, 262, 475, 509, 759
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	3 cut(s)	110, 629, 655
HspAI	GCGC	1 cut(s)	484
Kzo9I	GATC	4 cut(s)	52, 61, 109, 719
LmnI	GCTCC	3 cut(s)	256, 481, 547
Lsp1109I	GCAGC	1 cut(s)	562
LweI	GCATC	2 cut(s)	56, 108
MaeI	CTAG	2 cut(s)	531, 554
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	533, 746
MalI	GATC	4 cut(s)	54, 63, 111, 721
MboI	GATC	4 cut(s)	52, 61, 109, 719
MboII	GAAGA	5 cut(s)	209, 341, 507, 572, 714
MflI	RGATCY	1 cut(s)	719
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	5 cut(s)	29, 101, 160, 209, 351
MmeI	TCCRAC	1 cut(s)	697
MnlI	CCTC	6 cut(s)	152, 319, 453, 472, 483, 663
MroXI	GAANNNNTTC	1 cut(s)	101
MslI	CAYNNNNRTG	2 cut(s)	408, 630
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	123, 471
MvaI	CCWGG	1 cut(s)	471
MwoI	GCNNNNNNNGC	1 cut(s)	83
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	4 cut(s)	52, 61, 109, 719
NlaIII	CATG	3 cut(s)	110, 629, 655
NmuCI	GTSAC	1 cut(s)	533
NspI	RCATGY	2 cut(s)	629, 655
PciI	ACATGT	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	221, 271
PkrI	GCNGC	2 cut(s)	421, 552
Ppu21I	YACGTR	1 cut(s)	59
PscI	ACATGT	1 cut(s)	625
PsiI	TTATAA	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	469
PspEI	GGTNACC	1 cut(s)	746
PspGI	CCWGG	1 cut(s)	469
PspPI	GGNCC	1 cut(s)	125
PstNI	CAGNNNCTG	2 cut(s)	50, 740
PsuI	RGATCY	1 cut(s)	719
RsaI	GTAC	4 cut(s)	172, 267, 683, 754
RsaNI	GTAC	4 cut(s)	171, 266, 682, 753
RseI	CAYNNNNRTG	2 cut(s)	408, 630
SacI	GAGCTC	1 cut(s)	261
SatI	GCNGC	2 cut(s)	420, 551
Sau3AI	GATC	4 cut(s)	52, 61, 109, 719
Sau96I	GGNCC	1 cut(s)	125
ScaI	AGTACT	2 cut(s)	267, 683
ScrFI	CCNGG	2 cut(s)	123, 471
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	9 cut(s)	61, 88, 205, 261, 286, 494, 532, 555, 674
SfaNI	GCATC	2 cut(s)	56, 108
SfcI	CTRYAG	1 cut(s)	457
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	2 cut(s)	408, 630
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	5 cut(s)	29, 101, 160, 209, 351
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	2 cut(s)	531, 554
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	121, 469
StyI	CCWWGG	1 cut(s)	693
TaaI	ACNGT	4 cut(s)	306, 461, 681, 752
TaiI	ACGT	1 cut(s)	61
TasI	AATT	5 cut(s)	29, 101, 160, 209, 351
TatI	WGTACW	3 cut(s)	170, 265, 681
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	2 cut(s)	221, 271
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	1 cut(s)	550
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	2 cut(s)	110, 222
VpaK11BI	GGWCC	1 cut(s)	125
XapI	RAATTY	3 cut(s)	29, 101, 209
XceI	RCATGY	2 cut(s)	629, 655
XmiI	GTMKAC	1 cut(s)	575
XmnI	GAANNNNTTC	1 cut(s)	101
XspI	CTAG	2 cut(s)	531, 554
ZrmI	AGTACT	2 cut(s)	267, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.