Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004649

Physical Location & Seq

Genomic Coordinates Reverse (-)

5108814 .. 5111001

Gene Structure 2188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1055200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTGGGCGAAGACCCTTTTGGAGACTTCTGAGCTGGAGGAATATGAAGCGAGGTCATCAGGGACATCTTCCCCAAAATCAACGGGATCAGTTGAAACTTCGATGTCATCTCACTTTGGCGGAATGAACTACCCTTCATTTTTCAGTTCACGGCCGGAGAAGTCTGGAGGAAGCAGATATAGCAATCCATCTACGGGAGGTCCCTCATTCGGTGAGGGTTTAGGATCTCCGATTATAGAAGAGCCTCCACCATACTCGTCACCTGTCGCACAAAGATTTGAGTCATTTGAGAATCCCTTAGCTGGGGGAGGATCCCAGAGTTTTGGTTCTCAAGATGACAAACGCATTTCTTCTGGAAATCTTCAGCATGGAACGGCACTCTATGACTTCACTGCTGGTGGAGATGATGAGGTTGACATTGAGTATGAAGTGGATGGCTGGTTTTATGTGAAGAAGAAACGCCCCGGCAGGGATGGAAAAATGGCTGGGCTGGTGCCGGTTCTCTACGTTAACCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_1 SH3_9

Protein Analysis

174

Amino Acids

18.59

Weight (kDa)

4.78

Isoelectric Point (pI)

71.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07360 AT2G07360
fragaria_vesca	FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210
malus_domestica	MD04G1002300.v1.1 MD07G1055200.v1.1 MD15G1427900.v1.1
prunus_persica	Prupe.7G042600_v2.0.a1 Prupe.7G042600_v2.0.a1
pyrus_communis	pycom04g00260
rosa_chinensis	RchiOBHm_Chr4g0384831 RchiOBHm_Chr4g0384941
rosa_laevigata	RLG00000010266
rosa_multiflora	Rmu_sc0003822.1_g000020 Rmu_sc0003822.1_g000021
rosa_roxburghii	Rroxscaffold_5G00332880
rosa_rugosa	Rorug03G0298100 Rorug03G0298200 Rorug03G0298300
rosa_samantha	Rh4AG001900 Rh4BG001700 Rh4CG001400 Rh4CG002100 Rh4DG001500
rosa_wichuraiana	Rw4G000720 Rw4G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	493
AciI	CCGC	1 cut(s)	120
AclWI	GGATC	4 cut(s)	94, 232, 306, 319
AcoI	YGGCCR	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	347
AfiI	CCNNNNNNNGG	5 cut(s)	194, 209, 302, 303, 469
AgsI	TTSAA	1 cut(s)	95
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	34, 302
AluI	AGCT	2 cut(s)	34, 302
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	4 cut(s)	94, 232, 306, 319
AoxI	GGCC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	200
AsuC2I	CCSGG	1 cut(s)	465
AsuHPI	GGTGA	2 cut(s)	224, 252
AvaII	GGWCC	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	311
BanI	GGYRCC	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	17
BccI	CCATC	3 cut(s)	196, 428, 467
BceAI	ACGGC	2 cut(s)	167, 390
BcnI	CCSGG	1 cut(s)	465
BcoDI	GTCTC	1 cut(s)	17
Bme1390I	CCNGG	1 cut(s)	465
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	3 cut(s)	202, 313, 495
BmrFI	CCNGG	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	17
BpmI	CTGGAG	2 cut(s)	56, 186
Bpu10I	CCTNAGC	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	315
BpuMI	CCSGG	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	463
Bsc4I	CCNNNNNNNGG	5 cut(s)	194, 209, 302, 303, 469
Bse118I	RCCGGY	1 cut(s)	496
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	2 cut(s)	439, 478
BseLI	CCNNNNNNNGG	5 cut(s)	194, 209, 302, 303, 469
BseMII	CTCAG	1 cut(s)	21
BseX3I	CGGCCG	1 cut(s)	152
BseYI	CCCAGC	2 cut(s)	302, 485
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	154
BshNI	GGYRCC	1 cut(s)	493
BsiEI	CGRYCG	1 cut(s)	155
BsiSI	CCGG	3 cut(s)	155, 465, 497
BslFI	GGGAC	2 cut(s)	76, 186
BslI	CCNNNNNNNGG	5 cut(s)	194, 209, 302, 303, 469
BsmAI	GTCTC	1 cut(s)	17
BsmFI	GGGAC	2 cut(s)	76, 186
BsnI	GGCC	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	86, 224, 311
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	202, 313, 495
BspPI	GGATC	4 cut(s)	94, 232, 306, 319
BspQI	GCTCTTC	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	496
BssAI	RCCGGY	1 cut(s)	496
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	3 cut(s)	86, 224, 311
Bst6I	CTCTTC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	30, 298
BstF5I	GGATG	2 cut(s)	439, 478
BstKTI	GATC	3 cut(s)	89, 227, 314
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	3 cut(s)	86, 224, 311
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	2 cut(s)	224, 311
BstXI	CCANNNNNNTGG	1 cut(s)	323
BstYI	RGATCY	2 cut(s)	224, 311
BstZI	CGGCCG	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	439, 478
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	390
Cfr10I	RCCGGY	1 cut(s)	496
Cfr13I	GGNCC	1 cut(s)	200
CviAII	CATG	1 cut(s)	368
CviJI	RGCY	7 cut(s)	34, 154, 244, 302, 438, 485, 490
CviKI_1	RGCY	7 cut(s)	34, 154, 244, 302, 438, 485, 490
DdeI	CTNAG	2 cut(s)	30, 298
DpnI	GATC	3 cut(s)	88, 226, 313
DpnII	GATC	3 cut(s)	86, 224, 311
EaeI	YGGCCR	1 cut(s)	152
EagI	CGGCCG	1 cut(s)	152
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
EciI	GGCGGA	1 cut(s)	135
EclXI	CGGCCG	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	200
Eco52I	CGGCCG	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	200
FaeI	CATG	1 cut(s)	371
FaiI	YATR	8 cut(s)	45, 180, 236, 253, 369, 384, 426, 447
FaqI	GGGAC	2 cut(s)	76, 186
FatI	CATG	1 cut(s)	367
FokI	GGATG	2 cut(s)	446, 485
GsaI	CCCAGC	2 cut(s)	306, 489
GsuI	CTGGAG	2 cut(s)	56, 186
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	3 cut(s)	155, 465, 497
Hin1II	CATG	1 cut(s)	371
HincII	GTYRAC	2 cut(s)	415, 511
HindII	GTYRAC	2 cut(s)	415, 511
HinfI	GANTC	2 cut(s)	281, 292
HpaI	GTTAAC	1 cut(s)	511
HpaII	CCGG	3 cut(s)	155, 465, 497
HphI	GGTGA	2 cut(s)	224, 252
Hpy166II	GTNNAC	3 cut(s)	149, 415, 511
Hpy188I	TCNGA	2 cut(s)	31, 231
Hpy188III	TCNNGA	4 cut(s)	165, 332, 354, 519
Hpy8I	GTNNAC	3 cut(s)	149, 415, 511
HpyAV	CCTTC	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	507
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	2 cut(s)	30, 298
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	1 cut(s)	371
KspAI	GTTAAC	1 cut(s)	511
Kzo9I	GATC	3 cut(s)	86, 224, 311
LguI	GCTCTTC	1 cut(s)	234
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	3 cut(s)	88, 226, 313
MboI	GATC	3 cut(s)	86, 224, 311
MboII	GAAGA	7 cut(s)	22, 60, 251, 342, 353, 463, 466
MflI	RGATCY	2 cut(s)	224, 311
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	9 cut(s)	31, 45, 161, 191, 208, 214, 255, 302, 403
MseI	TTAA	1 cut(s)	510
MspI	CCGG	3 cut(s)	155, 465, 497
MspR9I	CCNGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	465
NdeII	GATC	3 cut(s)	86, 224, 311
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	3 cut(s)	202, 313, 495
NmuCI	GTSAC	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	292
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PpuMI	RGGWCCY	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	200
PspFI	CCCAGC	2 cut(s)	302, 485
PspN4I	GGNNCC	3 cut(s)	202, 313, 495
PspPI	GGNCC	1 cut(s)	200
PspPPI	RGGWCCY	1 cut(s)	200
PsuI	RGATCY	2 cut(s)	224, 311
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	510
Sau3AI	GATC	3 cut(s)	86, 224, 311
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	465
SetI	ASST	7 cut(s)	36, 56, 202, 265, 304, 414, 510
SinI	GGWCC	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	330
SmoI	CTYRAG	1 cut(s)	330
SsiI	CCGC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	463
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	258
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	4 cut(s)	60, 126, 140, 441
TspRI	CASTG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.