Rorug03G0298200

SH3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004649
Physical Location & Seq
Reverse (-)
30889441 .. 30890607
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0298200.1

Sequence Viewer

Length: 750 bp
ATGACATCATTGCCACCAACTATTCCTCCATCCCTTAAAGTTGTATGCAGTTGGGCCAAAGAAACATTGAGAAATGGGAACACCATTGTCTGCAACTTCGATGAAAAGGTTTTCGGACATGCGTCCAAAACTTTTGTGAGTAAACACAATATTAATAACTTTGTTACCATGAAGGAAGTATCGGGCAGCTCTATCAATCTTTATGGTGTGTTGAAAAAATCGAAGATGGTGGACATGGTCGGATTTATGGACACTACTAATATTGGTTCCATTGGGTGTTGTAATCCAATTGAGCGTTCCCGTGCAATAGCTGATAGGTTGAAACGAGCAAAGCGTGGCCAGATTCTTTTGTTGCAATATAACTCTAGATGTCACTGGATGCTGACTGTAATAAATGCTGAAGAAGACACTGTCTACTTCATGGATCCATTAAAGAGGAGACTTGTTACAGGAGAATGGAATGACATTATCGATAACAGCATCAAAATACATAATGCTCAAGTCAAAAGGCAAGGCAGAAAAGCAACTACCTGGAAAAACTGTGCGGGTATCCCGGAGCAAAAAACCAACAAAGATTGTGGATACTTTATAATGAGATACATGAAGGAAATAGTGGAAGATAATAATTTGGACTTTTTCAGCAAGGTAATTAAAACTAGTTTATATTGCTTGGATTGTGGTTATACTGTTATTTTGCATCTTGTTCTGGTGGATATGAATTATGTCTTGGATGTCCAGAATGCATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SH3_1 SH3_9

Protein Analysis

249

Amino Acids

28.46

Weight (kDa)

9.08

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 122 - 214 3e-11 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 590
AccI GTMKAC 1 cut(s) 414
AciI CCGC 1 cut(s) 545
AclWI GGATC 2 cut(s) 419, 432
AcoI YGGCCR 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 420
AgsI TTSAA 2 cut(s) 214, 322
AhlI ACTAGT 1 cut(s) 656
AjnI CCWGG 1 cut(s) 530
AjuI GAANNNNNNNTTGG 4 cut(s) 280, 312, 710, 742
AluBI AGCT 2 cut(s) 189, 311
AluI AGCT 2 cut(s) 189, 311
Alw26I GTCTC 1 cut(s) 433
AlwI GGATC 2 cut(s) 419, 432
AoxI GGCC 2 cut(s) 54, 337
ApeKI GCWGC 1 cut(s) 186
AseI ATTAAT 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 554
BalI TGGCCA 1 cut(s) 339
BamHI GGATCC 1 cut(s) 424
BbsI GAAGAC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 198
BccI CCATC 2 cut(s) 37, 220
BciT130I CCWGG 1 cut(s) 532
BciVI GTATCC 2 cut(s) 560, 575
BcnI CCSGG 1 cut(s) 554
BcoDI GTCTC 1 cut(s) 433
BcuI ACTAGT 1 cut(s) 656
BfaI CTAG 2 cut(s) 366, 657
BfuI GTATCC 2 cut(s) 560, 575
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
Bme1390I CCNGG 2 cut(s) 532, 554
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 2 cut(s) 268, 426
BmrFI CCNGG 2 cut(s) 532, 554
BmsI GCATC 3 cut(s) 369, 489, 706
BoxI GACNNNNGTC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 483
BpuMI CCSGG 1 cut(s) 554
Bsa29I ATCGAT 1 cut(s) 471
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bse1I ACTGG 1 cut(s) 380
Bse3DI GCAATG 1 cut(s) 8
BseBI CCWGG 1 cut(s) 532
BseCI ATCGAT 1 cut(s) 471
BseGI GGATG 3 cut(s) 29, 384, 736
BseMI GCAATG 1 cut(s) 8
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 1 cut(s) 451
BseXI GCAGC 1 cut(s) 198
BshFI GGCC 2 cut(s) 56, 339
BshVI ATCGAT 1 cut(s) 471
BsiSI CCGG 1 cut(s) 554
BsmAI GTCTC 1 cut(s) 433
BsmI GAATGC 1 cut(s) 745
BsnI GGCC 2 cut(s) 56, 339
Bsp143I GATC 1 cut(s) 424
BspACI CCGC 1 cut(s) 545
BspANI GGCC 2 cut(s) 56, 339
BspDI ATCGAT 1 cut(s) 471
BspLI GGNNCC 2 cut(s) 268, 426
BspPI GGATC 2 cut(s) 419, 432
BsrDI GCAATG 1 cut(s) 8
BsrI ACTGG 1 cut(s) 380
BssMI GATC 1 cut(s) 424
Bst2UI CCWGG 1 cut(s) 532
Bst4CI ACNGT 4 cut(s) 388, 412, 542, 688
BstF5I GGATG 3 cut(s) 29, 384, 736
BstKTI GATC 1 cut(s) 427
BstMAI GTCTC 1 cut(s) 433
BstMBI GATC 1 cut(s) 424
BstNI CCWGG 1 cut(s) 532
BstNSI RCATGY 1 cut(s) 122
BstPAI GACNNNNGTC 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 530, 552
BstV1I GCAGC 1 cut(s) 198
BstV2I GAAGAC 1 cut(s) 411
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
Bsu15I ATCGAT 1 cut(s) 471
BsuI GTATCC 2 cut(s) 560, 575
BsuRI GGCC 2 cut(s) 56, 339
BsuTUI ATCGAT 1 cut(s) 471
BtsCI GGATG 3 cut(s) 29, 384, 736
BtsIMutI CAGTG 2 cut(s) 373, 408
Cfr13I GGNCC 1 cut(s) 54
ClaI ATCGAT 1 cut(s) 471
CseI GACGC 1 cut(s) 111
CspCI CAANNNNNGTGG 2 cut(s) 559, 594
CviAII CATG 6 cut(s) 119, 169, 235, 421, 601, 744
CviJI RGCY 4 cut(s) 56, 189, 311, 339
CviKI_1 RGCY 4 cut(s) 56, 189, 311, 339
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 420
EcoRII CCWGG 1 cut(s) 530
EcoT22I ATGCAT 1 cut(s) 745
FaeI CATG 6 cut(s) 122, 172, 238, 424, 604, 747
FatI CATG 6 cut(s) 118, 168, 234, 420, 600, 743
FauI CCCGC 1 cut(s) 538
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 1 cut(s) 187
FokI GGATG 3 cut(s) 16, 391, 743
Fsp4HI GCNGC 1 cut(s) 187
FspBI CTAG 2 cut(s) 366, 657
GluI GCNGC 1 cut(s) 187
HaeIII GGCC 2 cut(s) 56, 339
HapII CCGG 1 cut(s) 554
HgaI GACGC 1 cut(s) 111
Hin1II CATG 6 cut(s) 122, 172, 238, 424, 604, 747
HinfI GANTC 1 cut(s) 343
HpaII CCGG 1 cut(s) 554
Hpy166II GTNNAC 3 cut(s) 143, 232, 415
Hpy188I TCNGA 2 cut(s) 116, 242
Hpy188III TCNNGA 2 cut(s) 366, 736
Hpy8I GTNNAC 3 cut(s) 143, 232, 415
HpyAV CCTTC 2 cut(s) 166, 598
HpyCH4III ACNGT 4 cut(s) 388, 412, 542, 688
HpyCH4V TGCA 6 cut(s) 48, 93, 305, 355, 697, 743
Hsp92II CATG 6 cut(s) 122, 172, 238, 424, 604, 747
Kzo9I GATC 1 cut(s) 424
LmnI GCTCC 1 cut(s) 556
LpnPI CCDG 7 cut(s) 353, 361, 435, 517, 544, 567, 692
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 3 cut(s) 369, 489, 706
MaeI CTAG 2 cut(s) 366, 657
MaeIII GTNAC 3 cut(s) 163, 371, 445
MalI GATC 1 cut(s) 426
MboI GATC 1 cut(s) 424
MboII GAAGA 4 cut(s) 235, 413, 416, 629
MfeI CAATTG 1 cut(s) 288
MflI RGATCY 1 cut(s) 424
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 4 cut(s) 288, 625, 648, 718
MluNI TGGCCA 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 2 cut(s) 36, 429
Mox20I TGGCCA 1 cut(s) 339
Mph1103I ATGCAT 1 cut(s) 745
MscI TGGCCA 1 cut(s) 339
MseI TTAA 4 cut(s) 36, 153, 431, 651
Msp20I TGGCCA 1 cut(s) 339
MspI CCGG 1 cut(s) 554
MspR9I CCNGG 2 cut(s) 532, 554
MunI CAATTG 1 cut(s) 288
Mva1269I GAATGC 1 cut(s) 745
MvaI CCWGG 1 cut(s) 532
NciI CCSGG 1 cut(s) 554
NdeII GATC 1 cut(s) 424
NlaIII CATG 6 cut(s) 122, 172, 238, 424, 604, 747
NlaIV GGNNCC 2 cut(s) 268, 426
NmuCI GTSAC 1 cut(s) 371
NsiI ATGCAT 1 cut(s) 745
NspI RCATGY 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 331
PctI GAATGC 1 cut(s) 745
PfeI GAWTC 1 cut(s) 343
PflFI GACNNNGTC 2 cut(s) 236, 410
PfoI TCCNGGA 1 cut(s) 552
PkrI GCNGC 1 cut(s) 188
PshAI GACNNNNGTC 1 cut(s) 121
PshBI ATTAAT 1 cut(s) 153
PsiI TTATAA 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 530
PspGI CCWGG 1 cut(s) 530
PspN4I GGNNCC 2 cut(s) 268, 426
PspPI GGNCC 1 cut(s) 54
PsuI RGATCY 1 cut(s) 424
PsyI GACNNNGTC 2 cut(s) 236, 410
SaqAI TTAA 4 cut(s) 36, 153, 431, 651
SatI GCNGC 1 cut(s) 187
Sau3AI GATC 1 cut(s) 424
Sau96I GGNCC 1 cut(s) 54
ScrFI CCNGG 2 cut(s) 532, 554
SetI ASST 6 cut(s) 111, 191, 313, 320, 533, 648
SfaNI GCATC 3 cut(s) 369, 489, 706
SmlI CTYRAG 1 cut(s) 498
SmoI CTYRAG 1 cut(s) 498
SpeI ACTAGT 1 cut(s) 656
Sse9I AATT 4 cut(s) 288, 625, 648, 718
SsiI CCGC 1 cut(s) 545
SspI AATATT 2 cut(s) 151, 262
SspMI CTAG 2 cut(s) 366, 657
StyD4I CCNGG 2 cut(s) 530, 552
TaaI ACNGT 4 cut(s) 388, 412, 542, 688
TaqI TCGA 3 cut(s) 99, 221, 471
TasI AATT 4 cut(s) 288, 625, 648, 718
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 4 cut(s) 36, 153, 431, 651
Tru9I TTAA 4 cut(s) 36, 153, 431, 651
TscAI CASTG 2 cut(s) 380, 415
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 1 cut(s) 186
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 5 cut(s) 117, 185, 409, 617, 731
TspRI CASTG 2 cut(s) 380, 415
Tth111I GACNNNGTC 2 cut(s) 236, 410
VspI ATTAAT 1 cut(s) 153
XbaI TCTAGA 1 cut(s) 365
XceI RCATGY 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 2 cut(s) 366, 657
Zsp2I ATGCAT 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.