Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003822.1

Orthogroup ID

OG0004649

Physical Location & Seq

Genomic Coordinates Forward (+)

80197 .. 81705

Gene Structure 1509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003822.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgaaagacaacacaagtgttgagattcccatcacagtctttaactctccttgtcttgataaagcatctggaactgcgttgtgggagccagacctatttgagtcgtttgagaatcccttagcccccagatcccagagttttggatcccaagatgacgaacgcgtttcttctggaaatcctcaacatggaacagcactttatgacttcactgctggtggagatgatgaggtaaagaagaaacgccctgggagggatgggaaaatggctgatctggtcccagtcctttatgttagtcaggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_1 SH3_9

Protein Analysis

100

Amino Acids

10.88

Weight (kDa)

4.56

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07360 AT2G07360
fragaria_vesca	FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210
malus_domestica	MD04G1002300.v1.1 MD07G1055200.v1.1 MD15G1427900.v1.1
prunus_persica	Prupe.7G042600_v2.0.a1 Prupe.7G042600_v2.0.a1
pyrus_communis	pycom04g00260
rosa_chinensis	RchiOBHm_Chr4g0384831 RchiOBHm_Chr4g0384941
rosa_laevigata	RLG00000010266
rosa_multiflora	Rmu_sc0003822.1_g000020 Rmu_sc0003822.1_g000021
rosa_roxburghii	Rroxscaffold_5G00332880
rosa_rugosa	Rorug03G0298100 Rorug03G0298200 Rorug03G0298300
rosa_samantha	Rh4AG001900 Rh4BG001700 Rh4CG001400 Rh4CG002100 Rh4DG001500
rosa_wichuraiana	Rw4G000720 Rw4G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	162
AclWI	GGATC	3 cut(s)	123, 138, 151
AfiI	CCNNNNNNNGG	2 cut(s)	185, 250
AflIII	ACRYGT	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	244
AlwI	GGATC	3 cut(s)	123, 138, 151
AspS9I	GGNCC	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	274
BamHI	GGATCC	1 cut(s)	143
BccI	CCATC	2 cut(s)	38, 248
BciT130I	CCWGG	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	3 cut(s)	87, 145, 276
BmrFI	CCNGG	1 cut(s)	246
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	74
BmuI	ACTGGG	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	244, 245
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 250
Bse1I	ACTGG	1 cut(s)	278
Bse8I	GATNNNNATC	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	2 cut(s)	244, 245
BseGI	GGATG	1 cut(s)	259
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	185, 250
BseNI	ACTGG	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	185, 250
BsmFI	GGGAC	1 cut(s)	260
Bsp143I	GATC	3 cut(s)	128, 143, 268
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	3 cut(s)	87, 145, 276
BspPI	GGATC	3 cut(s)	123, 138, 151
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	244, 245
BssMI	GATC	3 cut(s)	128, 143, 268
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	1 cut(s)	162
BstKTI	GATC	3 cut(s)	131, 146, 271
BstMBI	GATC	3 cut(s)	128, 143, 268
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
BstUI	CGCG	1 cut(s)	162
BstX2I	RGATCY	2 cut(s)	128, 143
BstXI	CCANNNNNNTGG	1 cut(s)	140
BstYI	RGATCY	2 cut(s)	128, 143
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	274
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	4 cut(s)	88, 122, 266, 299
CviKI_1	RGCY	4 cut(s)	88, 122, 266, 299
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	3 cut(s)	130, 145, 270
DpnII	GATC	3 cut(s)	128, 143, 268
Eco47I	GGWCC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	244
FaeI	CATG	1 cut(s)	188
FaiI	YATR	3 cut(s)	186, 201, 288
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	1 cut(s)	184
FokI	GGATG	1 cut(s)	266
Hin1II	CATG	1 cut(s)	188
HinfI	GANTC	3 cut(s)	25, 101, 112
Hpy188III	TCNNGA	3 cut(s)	56, 69, 171
HpyCH4III	ACNGT	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	118
Hsp92II	CATG	1 cut(s)	188
Kzo9I	GATC	3 cut(s)	128, 143, 268
LmnI	GCTCC	1 cut(s)	85
LweI	GCATC	1 cut(s)	74
MalI	GATC	3 cut(s)	130, 145, 270
MboI	GATC	3 cut(s)	128, 143, 268
MboII	GAAGA	2 cut(s)	159, 247
MflI	RGATCY	2 cut(s)	128, 143
MluI	ACGCGT	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	3 cut(s)	189, 220, 243
MseI	TTAA	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
MvnI	CGCG	1 cut(s)	162
NdeII	GATC	3 cut(s)	128, 143, 268
NlaIII	CATG	1 cut(s)	188
NlaIV	GGNNCC	3 cut(s)	87, 145, 276
PasI	CCCWGGG	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	25, 112
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	3 cut(s)	87, 145, 276
PspPI	GGNCC	1 cut(s)	274
PsuI	RGATCY	2 cut(s)	128, 143
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	3 cut(s)	128, 143, 268
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	2 cut(s)	96, 231
SfaNI	GCATC	1 cut(s)	74
SinI	GGWCC	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	244
TaaI	ACNGT	1 cut(s)	37
TfiI	GAWTC	2 cut(s)	25, 112
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.