RLG00000010266

SH3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004649
Physical Location & Seq
Reverse (-)
64880858 .. 64899611
18754 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010266

Sequence Viewer

Length: 3633 bp
ATGGCGGACTCGTCAGGGACGACCCTGATGGATCTGATAACGGCGGACCCTTCCACAGTATCAGCTTCCACCTCCTCAACGACGTCGTCTTCGTCTTCGTCTTCGGCGCATCCTCCTCCTCCTCCTCCTTATGCGGCTTCACCCCCACCGCCCAGAGGCACCAGCCCCGGCTCCGCTCTCGGAAAGCCTGCTGTCGAGAAGAGGTCCAAGAGGGCTGCGCTTATGCAGATCCAGAACGACACCATCTCTGCCGCCAAAGCTGCTCTCAATCCCGTTCGCACCAACATCATCATGCCCCAGAAGCACAGGCACAAGCAGAAAAAGCCTGTTTCATATGCTCAACTTGCAAGGAGCATTCACGAACTAGCTGCTACCTCCGATCAGAAAAGTTCCCAGAAGCAGTTGGTGAATCACGTCTTTCCCAAGCTCGCCGTCTACAATTCTGTTGACCCCTCTGTCGCCCCTTCTCTTCTCATGCTCAATCAGCAGTGTGAGGATAAGAGCGTTCTGCGATATGTCTATTATTACTTGGCCAGGATTTTATCAGATACTGGTGCACAAGGTGTAACCACAGGCGGTGGGATCCCAACTCCAAACTGGGATGCTCTAGCTGACATTGATGCTGTTGGAGGGGTAACTAGAGCTGATGTTGTACCAAGAATAGTAAATCAGCTCACTATAGAGGCTTCAAATGCTGATGCAGAATTTCATGCACGAAGACTGCAAGCTTTGAAGGCTCTTACATATGCTCCATCAACAAATTCTGAAATTTTGTCCAAATTGTATGAAATTGTGTTTGGCATTCTTGAGAAGGTTACTGATGGCCTGCAAAAACGCAAGAAAGGTGTGTTTGGGACTAAAGGTGGCGATAAAGAGTTTATCATCCGAAGTAACTTGCAATATGCTGCCCTAAGTGCTCTTAGAAGACTTCCATTGGATCCAGGAAACCCAGCTTTTTTGTACCGTGCTGTTCAAGGGGTGTCATTTGCTGATCCTGTTGCTGTAAGGCATGCTTTGGAAATTCTGTCTGAGCTAGCCACAAAAGACCCTTATGCAGTTGCGATGGGCTTAGGGAAACATGCAGAGCCTGGAGGGGCTTTGCAGGATGTTCTCCATTTGCATGATGTTCTTGCTAGAGTTGCTCTAGCTAGGTTGTGTTATACAATATCAAGAGCACGAGCATTGGATGACAGGCCTGATATTAGATCTCAGTTCAACTCTGTACTCTATCAACTCCTCCTGGATCCCAGTGAAAGAGTCTGTTTTGAGGCAATCTTATGTATATTGGGAAAACACGATAACACAGAAAGGACTGATGATCGAGCTGCTGGATGGTATCGATTAACTAGAGAGATTCTCAAGTTGCCAGAAGCACCTTCTGTGAAGGATTCCTCCAAAGATAAAGTTCAAAAGACAAGGCGTCCACAACCCCTTATTAAACTTGTAATGAGAAGATTGGAGAGTTCTTTCAGAAGTTTTTCTAGGCCAGTACTCCATGCAGCATCAAGAGTTGTGCAGGAGATGGGAAAGAGTCGGGCTGCCGCATTTGCTCTAGGCATACAGGATATCGACGAATCAGTGCATGTTAACACATTTTCTGAGACTCCTGATTCACGCGAGATAGATAGTAGTGAAGCCTCACATCCTGAGAGTATCCGAAGAACCTCTTCCTTACCGACTGGGGTAGGTGGCAAGGATACAATAGCTAGTTTGTTAGCTTCATTAATGGAAGTTGTGCGGACAACTGTGGCATGCGAGTGTGTTTATGTTCGAGCAATGGTTATTAAGGCATTGATCTGGATGCAAAGTCCACATGATTCGTTTGATCAACTAGAATCTATAATTGCATCAGAGCTTTCTGATCCAGCTTGGCCAGCCACGCTCTTGAATGATATTTTACTCACTTTGCATGCTCGGTTTAAGGCAACTCCAGATATGGCCGTCACTCTTCTTGAAATTGCAAGGATCTTTGCAACTAAAGCCCCGGGGAAGATCGATGCTGATGTACTACAACTACTGTGGAAGACTTGTCTTGTTGGAGCTGGTCCTGATGGGAAACACACTGCATTAGAAGCGGTTACCATAGTTCTCGATTTACCACCACCACAACCTGGGTCAATGTTGGGGCTTACATCAGTTGACAGGGTATCTGCATCTGATCCAAAGGCAGCCCTGGCTTTACAGAGATTAGTACAAGCAGCAGTATGGTTTCTTGGAGAAAATGCAAACTATGCTGCTTCTGAATATGCTTGGGAATCCGCAACCCCTCCTGGTACCGCATTGATGATGCTAGATGCAGATAAAATGGTTGCTGCTGCCAGTTCCCGCAACCCTACTCTAGCTGGGGCATTGACTAGGCTACAGAGGTGTGCATTCAGTGGCAGCTGGGAGGTTCGGATCATTGCTGCTCAAGCTCTCACAACTATGGCAATAAGATCTGGTGAGCCTTTTAGGCTACAAATCTATGAATTTTTACACACTATAGCACAGGGCGGAGTGCAGTCTCAGTTTTCTGACATGCATCCCAGTAATGGAGAAGACCAAGGAGCTAGTGGCACAGGCCTCGGAGTTCTAATCAGTCCCATGATAGAGGTTCTTGATGAAATGTATAGGGCACAAGATGATTTGATCAAGGAAATGCGCAACCATGATAATGCTAATAAGGAATGGACAGATGAAGAGCTTAAGAAACTCTATGAAACCCATGAAAGGTTGCTTGATCTTGTTTCTCTGTTTTGTTATGTTCCAAGAGCAAAATATCTGCCTTTGGGACCAATAAGTGCGAAACTTATCGACATCTATCGCACCAGGCACAATATTAGTGCATCAACTGGTTTGAGTGATCCAGCTGTTGCTACTGGAATTTCTGATCTTATGTATGAATCTAAACCAGCAGCTGTAGAGCCTGATGTGCTTGATGATGACCTTGTAAATGCTTGGGCAGCAAACCTTGGTGATGACGGACTGTTAGGAAATAATGCACCAGCAATGAGCAGGGTTAATGAATTTCTAGCTGGTGCTGGAACTGATGCTCCTGATGTGGATGAGGAAAACATCATCTCTAGGCCGTCAGTTGGTTACGATGATATGTGGGCAAAGACCCTTTTAGAGACTTCAGAACTGGAGGAAGAAGACGCGAGGTCATCTGGGACATCTTCACCTGAATCAACAGGCTCGGTCGAAACTTCCATATCATCGCATTTTGGGGGAATGAATTACCCTTCACTTTTCAGTTCACGGCCGGAGAGGTCTGGAGGAAGCAGATATAGCAATCCATCTATGGGGGGTCCCTCATTCAATGAGGGTTTAGGATCTCCAATTAGAGAAGAGCCTCCGCCATACTCATCACCTGCAACGCAAAGATTTGAGTCGTTTGAGAATCCCTTAGCTGGGCATGGATCCCAGAGTTTTGGATCCCAAGATGACGAACGCGTTTCTTCTGGAAATCCTCAACATGGAACAGCACTTTATGACTTCACTGCTGGCGGAGATGATGAGTTAAATTTAACAGCTGGAGAGGAGGTTGATATCGAGTACGAAGTGGATGGCTGGTTTTATGTAAAGAAGAAACGCCCTGGGAGGGATGGGAAAATGGCTGGTCTGGTCCCTGTCCTCTATGTTAGTCAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SH3_1 SH3_9

Protein Analysis

1211

Amino Acids

130.98

Weight (kDa)

5.5

Isoelectric Point (pI)

48.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_1 PF00018 1154 - 1195 7.2e-06 SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3358
AasI GACNNNNNNGTC 1 cut(s) 455
AatII GACGTC 1 cut(s) 86
Acc16I TGCGCA 1 cut(s) 2642
Acc36I ACCTGC 1 cut(s) 3358
Acc65I GGTACC 1 cut(s) 2273
AccB1I GGYRCC 2 cut(s) 158, 2273
AccB7I CCANNNNNTGG 1 cut(s) 2111
AccBSI CCGCTC 1 cut(s) 176
AccI GTMKAC 1 cut(s) 435
AccII CGCG 3 cut(s) 1617, 3137, 3432
AcoI YGGCCR 4 cut(s) 531, 1871, 1938, 3239
AcsI RAATTY 8 cut(s) 704, 760, 768, 1020, 2468, 2862, 3005, 3502
AcuI CTGAAG 1 cut(s) 3099
AcyI GRCGYC 2 cut(s) 83, 1420
AdeI CACNNNGTG 1 cut(s) 563
AfaI GTAC 8 cut(s) 654, 962, 1224, 1491, 2007, 2193, 2275, 3536
AflII CTTAAG 1 cut(s) 2684
AflIII ACRYGT 1 cut(s) 3430
AgsI TTSAA 8 cut(s) 690, 733, 974, 1216, 1409, 1888, 1955, 3298
AhdI GACNNNNNGTC 2 cut(s) 1419, 3139
AjiI CACGTC 1 cut(s) 415
AjnI CCWGG 9 cut(s) 533, 940, 1087, 1239, 2110, 2172, 2269, 2807, 3574
AjuI GAANNNNNNNTTGG 2 cut(s) 780, 812
AloI GAACNNNNNNTCC 2 cut(s) 3016, 3048
Alw21I GWGCWC 3 cut(s) 559, 919, 1177
Alw26I GTCTC 3 cut(s) 1595, 2508, 3104
Alw44I GTGCAC 1 cut(s) 555
AlwNI CAGNNNCTG 3 cut(s) 551, 1088, 2897
Ama87I CYCGRG 1 cut(s) 1984
AoxI GGCC 9 cut(s) 531, 823, 1193, 1484, 1871, 1938, 2560, 3065, 3239
ApaLI GTGCAC 1 cut(s) 555
ApoI RAATTY 8 cut(s) 704, 760, 768, 1020, 2468, 2862, 3005, 3502
ArsI GACNNNNNNTTYG 2 cut(s) 73, 105
AseI ATTAAT 1 cut(s) 1724
Asp700I GAANNNNTTC 2 cut(s) 1477, 1666
Asp718I GGTACC 1 cut(s) 2273
AspLEI GCGC 3 cut(s) 109, 220, 2643
AspS9I GGNCC 6 cut(s) 46, 204, 2045, 2771, 3287, 3604
AsuC2I CCSGG 3 cut(s) 168, 1985, 1986
AsuHPI GGTGA 6 cut(s) 132, 418, 2453, 2966, 3150, 3339
AsuNHI GCTAGC 1 cut(s) 1033
AvaI CYCGRG 1 cut(s) 1984
AvaII GGWCC 6 cut(s) 46, 204, 2045, 2771, 3287, 3604
BaeGI GKGCMC 2 cut(s) 559, 2617
BalI TGGCCA 2 cut(s) 533, 1873
BamHI GGATCC 5 cut(s) 582, 937, 1243, 3398, 3413
BanI GGYRCC 2 cut(s) 158, 2273
BauI CACGAG 1 cut(s) 1176
BbsI GAAGAC 8 cut(s) 81, 87, 93, 724, 931, 2030, 2544, 3138
Bbv12I GWGCWC 3 cut(s) 559, 919, 1177
BceAI ACGGC 5 cut(s) 57, 416, 1925, 3052, 3254
BcgI CGANNNNNNTGC 4 cut(s) 350, 384, 2545, 2579
BciT130I CCWGG 9 cut(s) 535, 942, 1089, 1241, 2112, 2174, 2271, 2809, 3576
BciVI GTATCC 2 cut(s) 1664, 1690
BclI TGATCA 2 cut(s) 1825, 2628
BcnI CCSGG 3 cut(s) 168, 1985, 1986
BcoDI GTCTC 3 cut(s) 1595, 2508, 3104
BfmI CTRYAG 4 cut(s) 678, 2360, 2481, 2898
BfrI CTTAAG 1 cut(s) 2684
BfuAI ACCTGC 1 cut(s) 3358
BfuI GTATCC 2 cut(s) 1664, 1690
BglI GCCNNNNNGGC 1 cut(s) 2452
BglII AGATCT 2 cut(s) 1205, 2435
BmcAI AGTACT 1 cut(s) 1491
Bme18I GGWCC 6 cut(s) 46, 204, 2045, 2771, 3287, 3604
BmeRI GACNNNNNGTC 2 cut(s) 1419, 3139
BmeT110I CYCGRG 1 cut(s) 1984
BmgBI CACGTC 1 cut(s) 415
BmgT120I GGNCC 6 cut(s) 46, 204, 2045, 2771, 3287, 3604
BmrI ACTGGG 4 cut(s) 607, 1242, 1689, 2520
BmtI GCTAGC 1 cut(s) 1037
BmuI ACTGGG 4 cut(s) 607, 1242, 1689, 2520
BpiI GAAGAC 8 cut(s) 81, 87, 93, 724, 931, 2030, 2544, 3138
BplI GAGNNNNNCTC 2 cut(s) 1341, 1373
BpmI CTGGAG 5 cut(s) 1110, 1914, 3143, 3273, 3534
Bpu10I CCTNAGC 2 cut(s) 1069, 3385
BpuEI CTTGAG 3 cut(s) 827, 1343, 2394
BpuMI CCSGG 3 cut(s) 168, 1985, 1986
Bsa29I ATCGAT 2 cut(s) 1339, 1995
BsaHI GRCGYC 2 cut(s) 83, 1420
BsaXI ACNNNNNCTCC 6 cut(s) 733, 763, 3016, 3046, 3507, 3537
Bse3DI GCAATG 3 cut(s) 1782, 2400, 2994
BseBI CCWGG 9 cut(s) 535, 942, 1089, 1241, 2112, 2174, 2271, 2809, 3576
BseCI ATCGAT 2 cut(s) 1339, 1995
BseMI GCAATG 3 cut(s) 1782, 2400, 2994
BseMII CTCAG 5 cut(s) 1020, 1223, 1590, 1638, 2519
BseRI GAGGAG 7 cut(s) 64, 105, 108, 111, 114, 1226, 3533
BseSI GKGCMC 2 cut(s) 559, 2617
BseX3I CGGCCG 1 cut(s) 3239
BseYI CCCAGC 4 cut(s) 949, 2342, 2385, 3389
BsgI GTGCAG 2 cut(s) 1535, 2519
Bsh1236I CGCG 3 cut(s) 1617, 3137, 3432
Bsh1285I CGRYCG 2 cut(s) 3180, 3242
BshFI GGCC 9 cut(s) 533, 825, 1195, 1486, 1873, 1940, 2562, 3067, 3241
BshNI GGYRCC 2 cut(s) 158, 2273
BshVI ATCGAT 2 cut(s) 1339, 1995
BsiEI CGRYCG 2 cut(s) 3180, 3242
BsiHKAI GWGCWC 3 cut(s) 559, 919, 1177
BsiHKCI CYCGRG 1 cut(s) 1984
BsiSI CCGG 3 cut(s) 168, 1985, 3242
BslFI GGGAC 7 cut(s) 31, 868, 2565, 2784, 3163, 3273, 3590
BsmAI GTCTC 3 cut(s) 1595, 2508, 3104
BsmFI GGGAC 7 cut(s) 31, 868, 2565, 2784, 3163, 3273, 3590
BsmI GAATGC 3 cut(s) 354, 801, 2372
BsnI GGCC 9 cut(s) 533, 825, 1195, 1486, 1873, 1940, 2562, 3067, 3241
BsoBI CYCGRG 1 cut(s) 1984
Bsp1286I GDGCHC 4 cut(s) 559, 919, 1177, 2617
BspANI GGCC 9 cut(s) 533, 825, 1195, 1486, 1873, 1940, 2562, 3067, 3241
BspCNI CTCAG 5 cut(s) 1021, 1222, 1591, 1639, 2518
BspDI ATCGAT 2 cut(s) 1339, 1995
BspFNI CGCG 3 cut(s) 1617, 3137, 3432
BspMI ACCTGC 1 cut(s) 3358
BspOI GCTAGC 1 cut(s) 1037
BspQI GCTCTTC 2 cut(s) 2673, 3321
BspT107I GGYRCC 2 cut(s) 158, 2273
BspTI CTTAAG 1 cut(s) 2684
BsrBI CCGCTC 1 cut(s) 176
BsrDI GCAATG 3 cut(s) 1782, 2400, 2994
BssNI GRCGYC 2 cut(s) 83, 1420
BssSI CACGAG 1 cut(s) 1176
BssT1I CCWWGG 2 cut(s) 2542, 2950
Bst2BI CACGAG 1 cut(s) 1176
Bst2UI CCWGG 9 cut(s) 535, 942, 1089, 1241, 2112, 2174, 2271, 2809, 3576
Bst4CI ACNGT 5 cut(s) 58, 965, 1747, 2019, 2967
Bst6I CTCTTC 6 cut(s) 194, 474, 1672, 1953, 2673, 3321
BstACI GRCGYC 2 cut(s) 83, 1420
BstAFI CTTAAG 1 cut(s) 2684
BstAPI GCANNNNNTGC 1 cut(s) 2231
BstDEI CTNAG 9 cut(s) 911, 920, 1029, 1069, 1209, 1599, 1647, 2505, 3385
BstEII GGTNACC 1 cut(s) 2077
BstFNI CGCG 3 cut(s) 1617, 3137, 3432
BstHHI GCGC 3 cut(s) 109, 220, 2643
BstMAI GTCTC 3 cut(s) 1595, 2508, 3104
BstMCI CGRYCG 2 cut(s) 3180, 3242
BstNI CCWGG 9 cut(s) 535, 942, 1089, 1241, 2112, 2174, 2271, 2809, 3576
BstNSI RCATGY 6 cut(s) 1013, 1082, 1586, 1755, 1913, 2521
BstPI GGTNACC 1 cut(s) 2077
BstSFI CTRYAG 4 cut(s) 678, 2360, 2481, 2898
BstSLI GKGCMC 2 cut(s) 559, 2617
BstUI CGCG 3 cut(s) 1617, 3137, 3432
BstV2I GAAGAC 8 cut(s) 81, 87, 93, 724, 931, 2030, 2544, 3138
BstXI CCANNNNNNTGG 1 cut(s) 3410
BstZI CGGCCG 1 cut(s) 3239
Bsu15I ATCGAT 2 cut(s) 1339, 1995
BsuI GTATCC 2 cut(s) 1664, 1690
BsuRI GGCC 9 cut(s) 533, 825, 1195, 1486, 1873, 1940, 2562, 3067, 3241
BsuTUI ATCGAT 2 cut(s) 1339, 1995
BtgZI GCGATG 2 cut(s) 1076, 3180
BtrI CACGTC 1 cut(s) 415
BtsI GCAGTG 3 cut(s) 494, 2061, 3477
BtsIMutI CAGTG 6 cut(s) 494, 1255, 1584, 2061, 2383, 3477
BveI ACCTGC 1 cut(s) 3358
CaiI CAGNNNCTG 3 cut(s) 551, 1088, 2897
CfoI GCGC 3 cut(s) 109, 220, 2643
Cfr13I GGNCC 6 cut(s) 46, 204, 2045, 2771, 3287, 3604
Cfr9I CCCGGG 1 cut(s) 1984
ClaI ATCGAT 2 cut(s) 1339, 1995
CseI GACGC 2 cut(s) 1409, 3143
Csp6I GTAC 8 cut(s) 653, 961, 1223, 1490, 2006, 2192, 2274, 3535
CspCI CAANNNNNGTGG 2 cut(s) 2000, 2035
CviQI GTAC 8 cut(s) 653, 961, 1223, 1490, 2006, 2192, 2274, 3535
DdeI CTNAG 9 cut(s) 911, 920, 1029, 1069, 1209, 1599, 1647, 2505, 3385
DraIII CACNNNGTG 1 cut(s) 563
DrdI GACNNNNNNGTC 1 cut(s) 455
DriI GACNNNNNGTC 2 cut(s) 1419, 3139
DseDI GACNNNNNNGTC 1 cut(s) 455
EaeI YGGCCR 4 cut(s) 531, 1871, 1938, 3239
EagI CGGCCG 1 cut(s) 3239
Eam1104I CTCTTC 6 cut(s) 194, 474, 1672, 1953, 2673, 3321
Eam1105I GACNNNNNGTC 2 cut(s) 1419, 3139
EarI CTCTTC 6 cut(s) 194, 474, 1672, 1953, 2673, 3321
EciI GGCGGA 5 cut(s) 20, 59, 2508, 3324, 3501
EclXI CGGCCG 1 cut(s) 3239
Eco130I CCWWGG 2 cut(s) 2542, 2950
Eco147I AGGCCT 2 cut(s) 1195, 2562
Eco32I GATATC 2 cut(s) 1567, 3529
Eco47I GGWCC 6 cut(s) 46, 204, 2045, 2771, 3287, 3604
Eco52I CGGCCG 1 cut(s) 3239
Eco57I CTGAAG 1 cut(s) 3099
Eco88I CYCGRG 1 cut(s) 1984
Eco91I GGTNACC 1 cut(s) 2077
EcoO109I RGGNCCY 1 cut(s) 3287
EcoO65I GGTNACC 1 cut(s) 2077
EcoRII CCWGG 9 cut(s) 533, 940, 1087, 1239, 2110, 2172, 2269, 2807, 3574
EcoRV GATATC 2 cut(s) 1567, 3529
EcoT14I CCWWGG 2 cut(s) 2542, 2950
EcoT22I ATGCAT 1 cut(s) 2523
ErhI CCWWGG 2 cut(s) 2542, 2950
FalI AAGNNNNNCTT 4 cut(s) 997, 1029, 1651, 1683
FaqI GGGAC 7 cut(s) 31, 868, 2565, 2784, 3163, 3273, 3590
FauI CCCGC 1 cut(s) 2333
FauNDI CATATG 2 cut(s) 334, 745
FbaI TGATCA 2 cut(s) 1825, 2628
FblI GTMKAC 1 cut(s) 435
FspI TGCGCA 1 cut(s) 2642
GlaI GCGC 3 cut(s) 108, 219, 2642
GsaI CCCAGC 4 cut(s) 953, 2346, 2389, 3393
GsuI CTGGAG 5 cut(s) 1110, 1914, 3143, 3273, 3534
HaeIII GGCC 9 cut(s) 533, 825, 1195, 1486, 1873, 1940, 2562, 3067, 3241
HapII CCGG 3 cut(s) 168, 1985, 3242
HgaI GACGC 2 cut(s) 1409, 3143
HhaI GCGC 3 cut(s) 109, 220, 2643
Hin1I GRCGYC 2 cut(s) 83, 1420
Hin6I GCGC 3 cut(s) 107, 218, 2641
HinP1I GCGC 3 cut(s) 107, 218, 2641
HincII GTYRAC 3 cut(s) 448, 1588, 2140
HindII GTYRAC 3 cut(s) 448, 1588, 2140
HindIII AAGCTT 1 cut(s) 726
HpaI GTTAAC 1 cut(s) 1588
HpaII CCGG 3 cut(s) 168, 1985, 3242
HphI GGTGA 6 cut(s) 132, 418, 2453, 2966, 3150, 3339
Hpy166II GTNNAC 8 cut(s) 436, 448, 557, 1424, 1588, 1811, 2140, 3236
Hpy8I GTNNAC 8 cut(s) 436, 448, 557, 1424, 1588, 1811, 2140, 3236
Hpy99I CGWCG 3 cut(s) 85, 88, 1574
HpyAV CCTTC 7 cut(s) 60, 474, 727, 805, 1378, 1386, 3231
HpyCH4III ACNGT 5 cut(s) 58, 965, 1747, 2019, 2967
HpyCH4IV ACGT 2 cut(s) 83, 414
HpyF3I CTNAG 9 cut(s) 911, 920, 1029, 1069, 1209, 1599, 1647, 2505, 3385
HpySE526I ACGT 2 cut(s) 83, 414
Hsp92I GRCGYC 2 cut(s) 83, 1420
HspAI GCGC 3 cut(s) 107, 218, 2641
KflI GGGWCCC 1 cut(s) 3287
KpnI GGTACC 1 cut(s) 2277
Ksp22I TGATCA 2 cut(s) 1825, 2628
KspAI GTTAAC 1 cut(s) 1588
LguI GCTCTTC 2 cut(s) 2673, 3321
LmnI GCTCC 6 cut(s) 176, 351, 754, 2039, 2546, 3037
MaeII ACGT 2 cut(s) 83, 414
MaeIII GTNAC 7 cut(s) 565, 634, 814, 890, 1942, 2077, 3077
MbiI CCGCTC 1 cut(s) 176
MhlI GDGCHC 4 cut(s) 559, 919, 1177, 2617
MlsI TGGCCA 2 cut(s) 533, 1873
MluI ACGCGT 1 cut(s) 3430
MluNI TGGCCA 2 cut(s) 533, 1873
MlyI GAGTC 5 cut(s) 2, 1266, 1540, 1597, 3377
MmeI TCCRAC 2 cut(s) 607, 2017
Mox20I TGGCCA 2 cut(s) 533, 1873
Mph1103I ATGCAT 1 cut(s) 2523
MroXI GAANNNNTTC 2 cut(s) 1477, 1666
MscI TGGCCA 2 cut(s) 533, 1873
MslI CAYNNNNRTG 5 cut(s) 290, 1119, 1756, 2423, 2652
Msp20I TGGCCA 2 cut(s) 533, 1873
MspA1I CMGCKG 4 cut(s) 2385, 2849, 2897, 3512
MspCI CTTAAG 1 cut(s) 2684
MspI CCGG 3 cut(s) 168, 1985, 3242
Mva1269I GAATGC 3 cut(s) 354, 801, 2372
MvaI CCWGG 9 cut(s) 535, 942, 1089, 1241, 2112, 2174, 2271, 2809, 3576
MvnI CGCG 3 cut(s) 1617, 3137, 3432
NciI CCSGG 3 cut(s) 168, 1985, 1986
NdeI CATATG 2 cut(s) 334, 745
NheI GCTAGC 1 cut(s) 1033
NmuCI GTSAC 1 cut(s) 1942
NsbI TGCGCA 1 cut(s) 2642
NsiI ATGCAT 1 cut(s) 2523
NspI RCATGY 6 cut(s) 1013, 1082, 1586, 1755, 1913, 2521
PaeI GCATGC 3 cut(s) 1013, 1755, 1913
PaqCI CACCTGC 1 cut(s) 3358
PasI CCCWGGG 1 cut(s) 3575
PceI AGGCCT 2 cut(s) 1195, 2562
PciSI GCTCTTC 2 cut(s) 2673, 3321
PcsI WCGNNNNNNNCGW 2 cut(s) 17, 89
PctI GAATGC 3 cut(s) 354, 801, 2372
PdmI GAANNNNTTC 2 cut(s) 1477, 1666
PflFI GACNNNGTC 1 cut(s) 85
PflMI CCANNNNNTGG 1 cut(s) 2111
PfoI TCCNGGA 2 cut(s) 940, 1239
PleI GAGTC 5 cut(s) 2, 1265, 1539, 1597, 3376
PpsI GAGTC 5 cut(s) 2, 1265, 1539, 1597, 3376
PpuMI RGGWCCY 1 cut(s) 3287
PshBI ATTAAT 1 cut(s) 1724
Psp5II RGGWCCY 1 cut(s) 3287
Psp6I CCWGG 9 cut(s) 533, 940, 1087, 1239, 2110, 2172, 2269, 2807, 3574
PspEI GGTNACC 1 cut(s) 2077
PspFI CCCAGC 4 cut(s) 949, 2342, 2385, 3389
PspGI CCWGG 9 cut(s) 533, 940, 1087, 1239, 2110, 2172, 2269, 2807, 3574
PspPI GGNCC 6 cut(s) 46, 204, 2045, 2771, 3287, 3604
PspPPI RGGWCCY 1 cut(s) 3287
PstNI CAGNNNCTG 3 cut(s) 551, 1088, 2897
PsyI GACNNNGTC 1 cut(s) 85
PvuII CAGCTG 4 cut(s) 2385, 2849, 2897, 3512
RsaI GTAC 8 cut(s) 654, 962, 1224, 1491, 2007, 2193, 2275, 3536
RsaNI GTAC 8 cut(s) 653, 961, 1223, 1490, 2006, 2192, 2274, 3535
RseI CAYNNNNRTG 5 cut(s) 290, 1119, 1756, 2423, 2652
SapI GCTCTTC 2 cut(s) 2673, 3321
Sau96I GGNCC 6 cut(s) 46, 204, 2045, 2771, 3287, 3604
ScaI AGTACT 1 cut(s) 1491
SchI GAGTC 5 cut(s) 2, 1266, 1540, 1597, 3377
SduI GDGCHC 4 cut(s) 559, 919, 1177, 2617
SfcI CTRYAG 4 cut(s) 678, 2360, 2481, 2898
SinI GGWCC 6 cut(s) 46, 204, 2045, 2771, 3287, 3604
SmaI CCCGGG 1 cut(s) 1986
SmiMI CAYNNNNRTG 5 cut(s) 290, 1119, 1756, 2423, 2652
SmlI CTYRAG 4 cut(s) 806, 1358, 2409, 2684
SmoI CTYRAG 4 cut(s) 806, 1358, 2409, 2684
SphI GCATGC 3 cut(s) 1013, 1755, 1913
SseBI AGGCCT 2 cut(s) 1195, 2562
SspI AATATT 1 cut(s) 2818
StuI AGGCCT 2 cut(s) 1195, 2562
StyI CCWWGG 2 cut(s) 2542, 2950
TaaI ACNGT 5 cut(s) 58, 965, 1747, 2019, 2967
TaiI ACGT 2 cut(s) 86, 417
TaqII GACCGA 1 cut(s) 3166
TatI WGTACW 4 cut(s) 1222, 1489, 2005, 2191
TauI GCSGC 3 cut(s) 137, 254, 1544
TscAI CASTG 6 cut(s) 494, 1255, 1584, 2068, 2383, 3484
TseFI GTSAC 1 cut(s) 1942
Tsp45I GTSAC 1 cut(s) 1942
TspGWI ACGGA 1 cut(s) 2976
TspMI CCCGGG 1 cut(s) 1984
TspRI CASTG 6 cut(s) 494, 1255, 1584, 2068, 2383, 3484
Tth111I GACNNNGTC 1 cut(s) 85
Van91I CCANNNNNTGG 1 cut(s) 2111
Vha464I CTTAAG 1 cut(s) 2684
VneI GTGCAC 1 cut(s) 555
VpaK11BI GGWCC 6 cut(s) 46, 204, 2045, 2771, 3287, 3604
VspI ATTAAT 1 cut(s) 1724
XapI RAATTY 8 cut(s) 704, 760, 768, 1020, 2468, 2862, 3005, 3502
XceI RCATGY 6 cut(s) 1013, 1082, 1586, 1755, 1913, 2521
XcmI CCANNNNNNNNNTGG 2 cut(s) 594, 2549
XmaI CCCGGG 1 cut(s) 1984
XmiI GTMKAC 1 cut(s) 435
XmnI GAANNNNTTC 2 cut(s) 1477, 1666
ZraI GACGTC 1 cut(s) 84
ZrmI AGTACT 1 cut(s) 1491
Zsp2I ATGCAT 1 cut(s) 2523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.