Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004649

Physical Location & Seq

Genomic Coordinates Forward (+)

1444419 .. 1448296

Gene Structure 3878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G000730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGTCCGGGTCGGGTCTGGCTCTGGCGAGCTGGGCGAACAGTTATGGTTGGGCGACGAGGGAAAAAGGCAAGGGAGAGGTCTGGAGGAAGCAGATATATTAATCCATCTATGGGGGGTCCCTCATTCAGTAAGGGTTTAGGATCTCCATTTTGTATCCTGGACTGTCAAAATTGTGATTCTTCCGACTTTTATCATATTAGAGAAGAGCCTCCGCCATACTCGTCACCTGCAACGCAAAGATTTGAGTCGTTTGAGAATCCCTTAGCCCCCAGATCCCAGAGTTTTGGATCCCAAGATGACGAACGCATTTCTTCTGGAAATCCTCAACATGGAACAGCACTTTATGACTTCACTGCTGGTGGAGATGATGAGTTAAATTTTACAGCTGGAGAGGAGGTTGATATCGAGTACGAAGTGGATGGCTGGTTTTATGTAAAGAAGAAACGCCCTGGGAGGGATGGGAAAATGGCTGGTCTGGTCCCAGTCCTCTATGTTAGTCAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_1 SH3_9

Protein Analysis

169

Amino Acids

18.71

Weight (kDa)

6.14

Isoelectric Point (pI)

67.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_1	PF00018	113 - 154	1.1e-07	SH3 domain
SH3_9	PF14604	114 - 166	5.9e-07	Variant SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07360 AT2G07360
fragaria_vesca	FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210
malus_domestica	MD04G1002300.v1.1 MD07G1055200.v1.1 MD15G1427900.v1.1
prunus_persica	Prupe.7G042600_v2.0.a1 Prupe.7G042600_v2.0.a1
pyrus_communis	pycom04g00260
rosa_chinensis	RchiOBHm_Chr4g0384831 RchiOBHm_Chr4g0384941
rosa_laevigata	RLG00000010266
rosa_multiflora	Rmu_sc0003822.1_g000020 Rmu_sc0003822.1_g000021
rosa_roxburghii	Rroxscaffold_5G00332880
rosa_rugosa	Rorug03G0298100 Rorug03G0298200 Rorug03G0298300
rosa_samantha	Rh4AG001900 Rh4BG001700 Rh4CG001400 Rh4CG002100 Rh4DG001500
rosa_wichuraiana	Rw4G000720 Rw4G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	238
Acc36I	ACCTGC	1 cut(s)	238
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	4 cut(s)	151, 270, 285, 298
AcsI	RAATTY	1 cut(s)	379
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	3 cut(s)	113, 332, 457
AjnI	CCWGG	2 cut(s)	159, 451
AluBI	AGCT	2 cut(s)	32, 389
AluI	AGCT	2 cut(s)	32, 389
AlwI	GGATC	4 cut(s)	151, 270, 285, 298
ApoI	RAATTY	1 cut(s)	379
AseI	ATTAAT	1 cut(s)	102
AspS9I	GGNCC	3 cut(s)	5, 119, 481
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	219
AvaII	GGWCC	3 cut(s)	5, 119, 481
BamHI	GGATCC	1 cut(s)	290
BccI	CCATC	3 cut(s)	115, 416, 455
BciT130I	CCWGG	2 cut(s)	161, 453
BciVI	GTATCC	1 cut(s)	167
BcnI	CCSGG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	238
BfuI	GTATCC	1 cut(s)	167
Bme1390I	CCNGG	3 cut(s)	9, 161, 453
Bme18I	GGWCC	3 cut(s)	5, 119, 481
BmgT120I	GGNCC	3 cut(s)	5, 119, 481
BmiI	GGNNCC	5 cut(s)	6, 120, 121, 292, 483
BmrFI	CCNGG	3 cut(s)	9, 161, 453
BmrI	ACTGGG	1 cut(s)	479
BmuI	ACTGGG	1 cut(s)	479
BpmI	CTGGAG	2 cut(s)	105, 411
Bpu10I	CCTNAGC	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	451, 452
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 332, 457
Bse1I	ACTGG	1 cut(s)	485
BseBI	CCWGG	2 cut(s)	161, 453
BseDI	CCNNGG	2 cut(s)	451, 452
BseGI	GGATG	2 cut(s)	427, 466
BseLI	CCNNNNNNNGG	3 cut(s)	113, 332, 457
BseNI	ACTGG	1 cut(s)	485
BseRI	GAGGAG	1 cut(s)	410
BseYI	CCCAGC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	2 cut(s)	105, 467
BslI	CCNNNNNNNGG	3 cut(s)	113, 332, 457
BsmFI	GGGAC	2 cut(s)	105, 467
Bsp143I	GATC	3 cut(s)	143, 275, 290
BspACI	CCGC	1 cut(s)	215
BspLI	GGNNCC	5 cut(s)	6, 120, 121, 292, 483
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	4 cut(s)	151, 270, 285, 298
BspQI	GCTCTTC	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	2 cut(s)	451, 452
BssMI	GATC	3 cut(s)	143, 275, 290
Bst2UI	CCWGG	2 cut(s)	161, 453
Bst4CI	ACNGT	2 cut(s)	43, 167
Bst6I	CTCTTC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	265
BstF5I	GGATG	2 cut(s)	427, 466
BstKTI	GATC	3 cut(s)	146, 278, 293
BstMBI	GATC	3 cut(s)	143, 275, 290
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNI	CCWGG	2 cut(s)	161, 453
BstSCI	CCNGG	3 cut(s)	7, 159, 451
BstX2I	RGATCY	3 cut(s)	143, 275, 290
BstXI	CCANNNNNNTGG	1 cut(s)	287
BstYI	RGATCY	3 cut(s)	143, 275, 290
BsuI	GTATCC	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	427, 466
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	354
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	3 cut(s)	5, 119, 481
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	8 cut(s)	22, 32, 211, 269, 389, 426, 473, 506
CviKI_1	RGCY	8 cut(s)	22, 32, 211, 269, 389, 426, 473, 506
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	265
DpnI	GATC	3 cut(s)	145, 277, 292
DpnII	GATC	3 cut(s)	143, 275, 290
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	204
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	3 cut(s)	5, 119, 481
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	159, 451
EcoRV	GATATC	1 cut(s)	406
FaeI	CATG	1 cut(s)	335
FaiI	YATR	9 cut(s)	47, 99, 113, 198, 220, 333, 348, 435, 495
FaqI	GGGAC	2 cut(s)	105, 467
FatI	CATG	1 cut(s)	331
FokI	GGATG	2 cut(s)	434, 473
GsaI	CCCAGC	1 cut(s)	36
GsuI	CTGGAG	2 cut(s)	105, 411
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	1 cut(s)	335
HinfI	GANTC	3 cut(s)	179, 248, 259
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	2 cut(s)	84, 318
Hpy99I	CGWCG	1 cut(s)	60
HpyCH4III	ACNGT	2 cut(s)	43, 167
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	1 cut(s)	265
Hsp92II	CATG	1 cut(s)	335
KflI	GGGWCCC	1 cut(s)	119
Kzo9I	GATC	3 cut(s)	143, 275, 290
LguI	GCTCTTC	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	3 cut(s)	145, 277, 292
MboI	GATC	3 cut(s)	143, 275, 290
MboII	GAAGA	4 cut(s)	174, 218, 306, 454
MflI	RGATCY	3 cut(s)	143, 275, 290
MluCI	AATT	2 cut(s)	172, 379
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	210
MseI	TTAA	2 cut(s)	102, 377
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	3 cut(s)	9, 161, 453
MvaI	CCWGG	2 cut(s)	161, 453
MwoI	GCNNNNNNNGC	1 cut(s)	34
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	3 cut(s)	143, 275, 290
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	5 cut(s)	6, 120, 121, 292, 483
NmuCI	GTSAC	1 cut(s)	225
PaqCI	CACCTGC	1 cut(s)	238
PasI	CCCWGGG	1 cut(s)	452
PciSI	GCTCTTC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	179, 259
PfoI	TCCNGGA	1 cut(s)	159
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	119
PshBI	ATTAAT	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	159, 451
PspFI	CCCAGC	1 cut(s)	32
PspGI	CCWGG	2 cut(s)	159, 451
PspN4I	GGNNCC	5 cut(s)	6, 120, 121, 292, 483
PspPI	GGNCC	3 cut(s)	5, 119, 481
PspPPI	RGGWCCY	1 cut(s)	119
PsuI	RGATCY	3 cut(s)	143, 275, 290
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	102, 377
Sau3AI	GATC	3 cut(s)	143, 275, 290
Sau96I	GGNCC	3 cut(s)	5, 119, 481
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	3 cut(s)	9, 161, 453
SetI	ASST	5 cut(s)	34, 83, 232, 391, 402
SinI	GGWCC	3 cut(s)	5, 119, 481
Sse9I	AATT	2 cut(s)	172, 379
SsiI	CCGC	1 cut(s)	215
StyD4I	CCNGG	3 cut(s)	7, 159, 451
TaaI	ACNGT	2 cut(s)	43, 167
TaqI	TCGA	1 cut(s)	408
TasI	AATT	2 cut(s)	172, 379
TfiI	GAWTC	2 cut(s)	179, 259
Tru1I	TTAA	2 cut(s)	102, 377
Tru9I	TTAA	2 cut(s)	102, 377
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	225
Tsp45I	GTSAC	1 cut(s)	225
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	3 cut(s)	5, 119, 481
VspI	ATTAAT	1 cut(s)	102
XapI	RAATTY	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.