Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004649

Physical Location & Seq

Genomic Coordinates Forward (+)

209840 .. 214217

Gene Structure 4378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35838

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCTGATATTATTTGTTTTTGCAAAACTTATCGACATCTATCGCACTAGGCACAATATTAGTGCATCAACTGGTTTGAGTGATCCAGCTGTTGCTACTGGAATTTCTGATCTTATGTATGAATCTAAACCAGCAGCTGTAGAGCCTGATGCGCTTGATGATGACCTTGTAAATGCTTGGGCAGCAAACCTTGGTGATGACGGACCGTTAGGAAATAATGCACCAGCAATGAGCAGGGTTAATGAATTTCTAGCCGGTGCTGGAACTGATGCTCCTGATGTTGATGAGGAAAACATCATCTCTAGGCCGTCAGTTGGTTACGATGATATGTGGGCAAAGACCCTATTAGAGACTTCAGAACTGGAGGAAGAAGACGCGAGGTCATCCGGGACATCTTCACCTGAATCAACAGGCTCGGTCGAAACTTCCATATCATCGCATTTTGGGGGAATGAATTACCCTTCACTTTTCAGTTCACGGCCGGAGAGGTCTGGAGGAAGCAGATGTAGCAATCCATCTATGGGGGGTCCCTCATTCAGTGAGGGTTTAGGATCTCCAAGAAGAGCCTCCGCCATACTCGTCACCTGCAAGGCTGCAACGCAAAGATTTGAGTCGTTTGAGAATCCCTTAGCCCCCAGATCCCAGAGTTTTGGATCCCAAGATGACGAACGCGTTTCTTCTGGAAATCCTCAACATGGAACAGCACTTTATGACTTCACTGCTGGTGGAGATGATGAGTTAAATTTAACAGCTGGAGAGCAGGTTGATATCGAGTACGAAGTGGATGGCTGGTTTTATGTAAGTACAGGGTGCATAGGTTTAAACAATATTTGTGGTTTGTCGGTGCTCCAATATCTGGAAAGCAAGATTTCATCAATGTGTCCTTCCCCCTCTATGTTTTATTATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_1 SH3_9

Protein Analysis

303

Amino Acids

32.4

Weight (kDa)

4.21

Isoelectric Point (pI)

57.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07360 AT2G07360
fragaria_vesca	FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210
malus_domestica	MD04G1002300.v1.1 MD07G1055200.v1.1 MD15G1427900.v1.1
prunus_persica	Prupe.7G042600_v2.0.a1 Prupe.7G042600_v2.0.a1
pyrus_communis	pycom04g00260
rosa_chinensis	RchiOBHm_Chr4g0384831 RchiOBHm_Chr4g0384941
rosa_laevigata	RLG00000010266
rosa_multiflora	Rmu_sc0003822.1_g000020 Rmu_sc0003822.1_g000021
rosa_roxburghii	Rroxscaffold_5G00332880
rosa_rugosa	Rorug03G0298100 Rorug03G0298200 Rorug03G0298300
rosa_samantha	Rh4AG001900 Rh4BG001700 Rh4CG001400 Rh4CG002100 Rh4DG001500
rosa_wichuraiana	Rw4G000720 Rw4G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	593
Acc36I	ACCTGC	2 cut(s)	593, 751
AccB7I	CCANNNNNTGG	1 cut(s)	856
AccII	CGCG	2 cut(s)	377, 672
AciI	CCGC	1 cut(s)	570
AclWI	GGATC	5 cut(s)	77, 559, 633, 648, 661
AcoI	YGGCCR	1 cut(s)	479
AcsI	RAATTY	3 cut(s)	102, 245, 742
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	2 cut(s)	776, 805
AfiI	CCNNNNNNNGG	4 cut(s)	314, 521, 695, 856
AflIII	ACRYGT	1 cut(s)	670
AhdI	GACNNNNNGTC	1 cut(s)	379
AloI	GAACNNNNNNTCC	2 cut(s)	256, 288
AluBI	AGCT	3 cut(s)	89, 137, 752
AluI	AGCT	3 cut(s)	89, 137, 752
Alw21I	GWGCWC	1 cut(s)	849
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	5 cut(s)	77, 559, 633, 648, 661
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	2 cut(s)	305, 479
ApeKI	GCWGC	3 cut(s)	134, 182, 593
ApoI	RAATTY	3 cut(s)	102, 245, 742
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	203, 527
AsuC2I	CCSGG	1 cut(s)	388
AsuHPI	GGTGA	3 cut(s)	206, 390, 574
AvaII	GGWCC	2 cut(s)	203, 527
BamHI	GGATCC	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	849
BbvI	GCAGC	3 cut(s)	146, 194, 580
BccI	CCATC	2 cut(s)	523, 779
BceAI	ACGGC	2 cut(s)	292, 494
BcnI	CCSGG	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	3 cut(s)	48, 251, 303
BfmI	CTRYAG	1 cut(s)	138
BfuAI	ACCTGC	2 cut(s)	593, 751
BisI	GCNGC	3 cut(s)	135, 183, 594
BlsI	GCNGC	3 cut(s)	136, 184, 595
Bme1390I	CCNGG	1 cut(s)	388
Bme18I	GGWCC	2 cut(s)	203, 527
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmgT120I	GGNCC	2 cut(s)	203, 527
BmiI	GGNNCC	3 cut(s)	528, 529, 655
BmrFI	CCNGG	1 cut(s)	388
BmsI	GCATC	3 cut(s)	74, 139, 259
BpiI	GAAGAC	1 cut(s)	378
BpmI	CTGGAG	3 cut(s)	383, 513, 774
Bpu10I	CCTNAGC	1 cut(s)	628
BpuMI	CCSGG	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	4 cut(s)	256, 286, 747, 777
Bsc4I	CCNNNNNNNGG	4 cut(s)	314, 521, 695, 856
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	3 cut(s)	76, 103, 366
Bse3DI	GCAATG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	383, 790
BseLI	CCNNNNNNNGG	4 cut(s)	314, 521, 695, 856
BseMI	GCAATG	1 cut(s)	234
BseNI	ACTGG	3 cut(s)	76, 103, 366
BseX3I	CGGCCG	1 cut(s)	479
BseXI	GCAGC	3 cut(s)	146, 194, 580
Bsh1236I	CGCG	2 cut(s)	377, 672
Bsh1285I	CGRYCG	2 cut(s)	420, 482
BshFI	GGCC	2 cut(s)	307, 481
BsiEI	CGRYCG	2 cut(s)	420, 482
BsiHKAI	GWGCWC	1 cut(s)	849
BsiSI	CCGG	3 cut(s)	255, 387, 482
BslFI	GGGAC	2 cut(s)	403, 513
BslI	CCNNNNNNNGG	4 cut(s)	314, 521, 695, 856
BsmAI	GTCTC	1 cut(s)	344
BsmFI	GGGAC	2 cut(s)	403, 513
BsnI	GGCC	2 cut(s)	307, 481
Bsp1286I	GDGCHC	1 cut(s)	849
Bsp143I	GATC	5 cut(s)	82, 109, 551, 638, 653
BspACI	CCGC	1 cut(s)	570
BspANI	GGCC	2 cut(s)	307, 481
BspFNI	CGCG	2 cut(s)	377, 672
BspLI	GGNNCC	3 cut(s)	528, 529, 655
BspMI	ACCTGC	2 cut(s)	593, 751
BspPI	GGATC	5 cut(s)	77, 559, 633, 648, 661
BspQI	GCTCTTC	1 cut(s)	556
BsrDI	GCAATG	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	3 cut(s)	76, 103, 366
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	5 cut(s)	82, 109, 551, 638, 653
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	556
BstDEI	CTNAG	1 cut(s)	628
BstF5I	GGATG	2 cut(s)	383, 790
BstFNI	CGCG	2 cut(s)	377, 672
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	5 cut(s)	85, 112, 554, 641, 656
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	5 cut(s)	82, 109, 551, 638, 653
BstMCI	CGRYCG	2 cut(s)	420, 482
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 182, 507
BstSCI	CCNGG	1 cut(s)	386
BstSFI	CTRYAG	1 cut(s)	138
BstUI	CGCG	2 cut(s)	377, 672
BstV1I	GCAGC	3 cut(s)	146, 194, 580
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	3 cut(s)	551, 638, 653
BstXI	CCANNNNNNTGG	1 cut(s)	650
BstYI	RGATCY	3 cut(s)	551, 638, 653
BstZI	CGGCCG	1 cut(s)	479
BsuRI	GGCC	2 cut(s)	307, 481
BtgZI	GCGATG	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	383, 790
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	2 cut(s)	544, 717
BveI	ACCTGC	2 cut(s)	593, 751
CaiI	CAGNNNCTG	1 cut(s)	137
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	203, 527
CpoI	CGGWCCG	1 cut(s)	203
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	2 cut(s)	775, 804
CspCI	CAANNNNNGTGG	2 cut(s)	814, 849
CspI	CGGWCCG	1 cut(s)	203
CviAII	CATG	1 cut(s)	695
CviQI	GTAC	2 cut(s)	775, 804
DdeI	CTNAG	1 cut(s)	628
DpnI	GATC	5 cut(s)	84, 111, 553, 640, 655
DpnII	GATC	5 cut(s)	82, 109, 551, 638, 653
DraI	TTTAAA	1 cut(s)	822
DriI	GACNNNNNGTC	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	479
EagI	CGGCCG	1 cut(s)	479
Eam1104I	CTCTTC	1 cut(s)	556
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	556
EciI	GGCGGA	1 cut(s)	559
EclXI	CGGCCG	1 cut(s)	479
Eco130I	CCWWGG	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	769
Eco47I	GGWCC	2 cut(s)	203, 527
Eco52I	CGGCCG	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	527
EcoRV	GATATC	1 cut(s)	769
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	1 cut(s)	698
FaqI	GGGAC	2 cut(s)	403, 513
FatI	CATG	1 cut(s)	694
Fnu4HI	GCNGC	3 cut(s)	135, 183, 594
FokI	GGATG	2 cut(s)	370, 797
Fsp4HI	GCNGC	3 cut(s)	135, 183, 594
FspBI	CTAG	3 cut(s)	48, 251, 303
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	3 cut(s)	135, 183, 594
GsuI	CTGGAG	3 cut(s)	383, 513, 774
HaeIII	GGCC	2 cut(s)	307, 481
HapII	CCGG	3 cut(s)	255, 387, 482
HgaI	GACGC	1 cut(s)	383
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	698
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	4 cut(s)	122, 404, 611, 622
HpaII	CCGG	3 cut(s)	255, 387, 482
HphI	GGTGA	3 cut(s)	206, 390, 574
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	2 cut(s)	109, 358
Hpy188III	TCNNGA	4 cut(s)	275, 492, 681, 857
Hpy8I	GTNNAC	1 cut(s)	476
HpyAV	CCTTC	2 cut(s)	471, 894
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4V	TGCA	6 cut(s)	23, 65, 221, 588, 596, 813
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 182, 507
HpyF3I	CTNAG	1 cut(s)	628
Hsp92II	CATG	1 cut(s)	698
HspAI	GCGC	1 cut(s)	152
KflI	GGGWCCC	1 cut(s)	527
Kzo9I	GATC	5 cut(s)	82, 109, 551, 638, 653
LguI	GCTCTTC	1 cut(s)	556
LmnI	GCTCC	2 cut(s)	277, 852
Lsp1109I	GCAGC	3 cut(s)	146, 194, 580
LweI	GCATC	3 cut(s)	74, 139, 259
MaeI	CTAG	3 cut(s)	48, 251, 303
MaeIII	GTNAC	2 cut(s)	317, 580
MalI	GATC	5 cut(s)	84, 111, 553, 640, 655
MboI	GATC	5 cut(s)	82, 109, 551, 638, 653
MboII	GAAGA	5 cut(s)	380, 383, 387, 573, 669
MflI	RGATCY	3 cut(s)	551, 638, 653
MhlI	GDGCHC	1 cut(s)	849
MluCI	AATT	4 cut(s)	102, 245, 454, 742
MluI	ACGCGT	1 cut(s)	670
MlyI	GAGTC	1 cut(s)	620
MseI	TTAA	4 cut(s)	240, 740, 746, 821
MslI	CAYNNNNRTG	1 cut(s)	877
MspA1I	CMGCKG	3 cut(s)	89, 137, 752
MspI	CCGG	3 cut(s)	255, 387, 482
MspR9I	CCNGG	1 cut(s)	388
MssI	GTTTAAAC	1 cut(s)	822
MvnI	CGCG	2 cut(s)	377, 672
MwoI	GCNNNNNNNGC	3 cut(s)	151, 182, 507
NciI	CCSGG	1 cut(s)	388
NdeII	GATC	5 cut(s)	82, 109, 551, 638, 653
NlaIII	CATG	1 cut(s)	698
NlaIV	GGNNCC	3 cut(s)	528, 529, 655
NmuCI	GTSAC	1 cut(s)	580
PaqCI	CACCTGC	1 cut(s)	593
PciSI	GCTCTTC	1 cut(s)	556
PfeI	GAWTC	3 cut(s)	122, 404, 622
PflMI	CCANNNNNTGG	1 cut(s)	856
PfoI	TCCNGGA	1 cut(s)	386
PkrI	GCNGC	3 cut(s)	136, 184, 595
PleI	GAGTC	1 cut(s)	619
PmeI	GTTTAAAC	1 cut(s)	822
PpsI	GAGTC	1 cut(s)	619
PpuMI	RGGWCCY	1 cut(s)	527
Psp5II	RGGWCCY	1 cut(s)	527
PspN4I	GGNNCC	3 cut(s)	528, 529, 655
PspPI	GGNCC	2 cut(s)	203, 527
PspPPI	RGGWCCY	1 cut(s)	527
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	3 cut(s)	551, 638, 653
PvuII	CAGCTG	3 cut(s)	89, 137, 752
RsaI	GTAC	2 cut(s)	776, 805
RsaNI	GTAC	2 cut(s)	775, 804
RseI	CAYNNNNRTG	1 cut(s)	877
Rsr2I	CGGWCCG	1 cut(s)	203
RsrII	CGGWCCG	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	556
SaqAI	TTAA	4 cut(s)	240, 740, 746, 821
SatI	GCNGC	3 cut(s)	135, 183, 594
Sau3AI	GATC	5 cut(s)	82, 109, 551, 638, 653
Sau96I	GGNCC	2 cut(s)	203, 527
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	388
SduI	GDGCHC	1 cut(s)	849
SfaNI	GCATC	3 cut(s)	74, 139, 259
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	2 cut(s)	203, 527
SmiMI	CAYNNNNRTG	1 cut(s)	877
Sse9I	AATT	4 cut(s)	102, 245, 454, 742
SsiI	CCGC	1 cut(s)	570
SspI	AATATT	2 cut(s)	58, 829
SspMI	CTAG	3 cut(s)	48, 251, 303
StyD4I	CCNGG	1 cut(s)	386
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	207
TaqI	TCGA	3 cut(s)	33, 420, 771
TaqII	GACCGA	1 cut(s)	406
TasI	AATT	4 cut(s)	102, 245, 454, 742
TatI	WGTACW	1 cut(s)	803
TfiI	GAWTC	3 cut(s)	122, 404, 622
Tru1I	TTAA	4 cut(s)	240, 740, 746, 821
Tru9I	TTAA	4 cut(s)	240, 740, 746, 821
TscAI	CASTG	2 cut(s)	544, 724
TseFI	GTSAC	1 cut(s)	580
TseI	GCWGC	3 cut(s)	134, 182, 593
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	4 cut(s)	135, 258, 467, 861
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	2 cut(s)	544, 724
Van91I	CCANNNNNTGG	1 cut(s)	856
VpaK11BI	GGWCC	2 cut(s)	203, 527
XapI	RAATTY	3 cut(s)	102, 245, 742
XspI	CTAG	3 cut(s)	48, 251, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.