Rorug03G0298300

SH3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004649
Physical Location & Seq
Forward (+)
31006536 .. 31008344
1809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0298300.1

Sequence Viewer

Length: 171 bp
ATGATACCACTGGGTTTTCCTGCAACAGTGGCTAATTATATGATGAGTGGAGAAACTCATACTACAGACTACATGGTGCCTGATGTCAATGGAAATGGTCCAGTTGACAACTATGGCTATGAGAATATCATGGAGGATCCTGCGCAGAACTGTCTAACGGTTCATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SH3_1 SH3_9

Protein Analysis

56

Amino Acids

6.18

Weight (kDa)

4.05

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 76
AclWI GGATC 2 cut(s) 131, 144
AlwI GGATC 2 cut(s) 131, 144
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 98
AvaII GGWCC 1 cut(s) 98
BamHI GGATCC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 76
BfmI CTRYAG 1 cut(s) 63
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 78, 138
BmrI ACTGGG 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 15, 101
BseNI ACTGG 2 cut(s) 15, 101
BshNI GGYRCC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 78, 138
BspPI GGATC 2 cut(s) 131, 144
BspT107I GGYRCC 1 cut(s) 76
BsrI ACTGG 2 cut(s) 15, 101
BssMI GATC 1 cut(s) 136
Bst4CI ACNGT 3 cut(s) 28, 152, 160
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BtsIMutI CAGTG 2 cut(s) 8, 33
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 98
CviAII CATG 2 cut(s) 73, 130
CviJI RGCY 2 cut(s) 32, 117
CviKI_1 RGCY 2 cut(s) 32, 117
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 98
FaeI CATG 2 cut(s) 76, 133
FaiI YATR 7 cut(s) 39, 41, 60, 74, 114, 120, 131
FatI CATG 2 cut(s) 72, 129
FspI TGCGCA 1 cut(s) 144
GlaI GCGC 1 cut(s) 144
HhaI GCGC 1 cut(s) 145
Hin1II CATG 2 cut(s) 76, 133
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 170
Hpy8I GTNNAC 1 cut(s) 106
HpyCH4III ACNGT 3 cut(s) 28, 152, 160
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
Hsp92II CATG 2 cut(s) 76, 133
HspAI GCGC 1 cut(s) 143
Kzo9I GATC 1 cut(s) 136
LpnPI CCDG 4 cut(s) 33, 93, 114, 153
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MflI RGATCY 1 cut(s) 136
MluCI AATT 1 cut(s) 34
MnlI CCTC 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 1 cut(s) 136
NlaIII CATG 2 cut(s) 76, 133
NlaIV GGNNCC 2 cut(s) 78, 138
NsbI TGCGCA 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 78, 138
PspPI GGNCC 1 cut(s) 98
PsuI RGATCY 1 cut(s) 136
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 1 cut(s) 98
SfcI CTRYAG 1 cut(s) 63
SgeI CNNG 7 cut(s) 23, 32, 85, 92, 113, 142, 152
SinI GGWCC 1 cut(s) 98
Sse9I AATT 1 cut(s) 34
TaaI ACNGT 3 cut(s) 28, 152, 160
TasI AATT 1 cut(s) 34
TscAI CASTG 2 cut(s) 15, 33
TspDTI ATGAA 1 cut(s) 152
TspRI CASTG 2 cut(s) 15, 33
VpaK11BI GGWCC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.