SH3 domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G07360 AT2G07360 |
| fragaria_vesca | FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 |
| malus_domestica | MD04G1002300.v1.1 MD07G1055200.v1.1 MD15G1427900.v1.1 |
| prunus_persica | Prupe.7G042600_v2.0.a1 Prupe.7G042600_v2.0.a1 |
| pyrus_communis | pycom04g00260 |
| rosa_chinensis | RchiOBHm_Chr4g0384831 RchiOBHm_Chr4g0384941 |
| rosa_laevigata | RLG00000010266 |
| rosa_multiflora | Rmu_sc0003822.1_g000020 Rmu_sc0003822.1_g000021 |
| rosa_roxburghii | Rroxscaffold_5G00332880 |
| rosa_rugosa | Rorug03G0298100 Rorug03G0298200 Rorug03G0298300 |
| rosa_samantha | Rh4AG001900 Rh4BG001700 Rh4CG001400 Rh4CG002100 Rh4DG001500 |
| rosa_wichuraiana | Rw4G000720 Rw4G000730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 58, 413 |
| AatII | GACGTC | 1 cut(s) | 59 |
| Acc65I | GGTACC | 1 cut(s) | 1293 |
| AccB1I | GGYRCC | 2 cut(s) | 1293, 3562 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2069, 2738 |
| AccI | GTMKAC | 2 cut(s) | 393, 2097 |
| AccII | CGCG | 2 cut(s) | 673, 2767 |
| AccIII | TCCGGA | 1 cut(s) | 843 |
| AcoI | YGGCCR | 4 cut(s) | 144, 489, 781, 3197 |
| AcsI | RAATTY | 6 cut(s) | 495, 662, 978, 2426, 2820, 2963 |
| AcuI | CTGAAG | 4 cut(s) | 2303, 2877, 3012, 3392 |
| AcyI | GRCGYC | 3 cut(s) | 56, 68, 1378 |
| AdeI | CACNNNGTG | 1 cut(s) | 521 |
| AfeI | AGCGCT | 1 cut(s) | 115 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 127, 1278, 2069, 2738, 3239, 3254, 3347, 3348, 3538 |
| AflII | CTTAAG | 1 cut(s) | 2642 |
| AflIII | ACRYGT | 2 cut(s) | 1985, 2436 |
| AgsI | TTSAA | 9 cut(s) | 77, 188, 648, 691, 1174, 1846, 1913, 3140, 3335 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1377 |
| AjiI | CACGTC | 1 cut(s) | 373 |
| AjnI | CCWGG | 7 cut(s) | 898, 906, 1045, 1197, 1942, 2068, 2227 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 738, 770, 3047, 3079 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2974, 3006 |
| Alw21I | GWGCWC | 4 cut(s) | 517, 1135, 2530, 2575 |
| Alw26I | GTCTC | 4 cut(s) | 877, 1566, 2466, 3062 |
| Alw44I | GTGCAC | 1 cut(s) | 513 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 509, 959, 1046, 2855 |
| Aor13HI | TCCGGA | 1 cut(s) | 843 |
| Aor51HI | AGCGCT | 1 cut(s) | 115 |
| ApaLI | GTGCAC | 1 cut(s) | 513 |
| ApoI | RAATTY | 6 cut(s) | 495, 662, 978, 2426, 2820, 2963 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 46, 78 |
| AseI | ATTAAT | 1 cut(s) | 1587 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1611, 1621, 1624 |
| Asp718I | GGTACC | 1 cut(s) | 1293 |
| AspLEI | GCGC | 4 cut(s) | 94, 116, 175, 673 |
| AspS9I | GGNCC | 6 cut(s) | 19, 1152, 1269, 2003, 2729, 3245 |
| AsuC2I | CCSGG | 3 cut(s) | 1280, 3106, 3534 |
| AsuHPI | GGTGA | 4 cut(s) | 2411, 2924, 3269, 3297 |
| AsuII | TTCGAA | 2 cut(s) | 1615, 2353 |
| AvaII | GGWCC | 3 cut(s) | 19, 2003, 3245 |
| BaeGI | GKGCMC | 2 cut(s) | 517, 3567 |
| BalI | TGGCCA | 1 cut(s) | 491 |
| BamHI | GGATCC | 4 cut(s) | 540, 895, 1201, 3356 |
| BanI | GGYRCC | 2 cut(s) | 1293, 3562 |
| BanII | GRGCYC | 1 cut(s) | 2530 |
| BauI | CACGAG | 1 cut(s) | 1134 |
| BbsI | GAAGAC | 4 cut(s) | 54, 1281, 1988, 3062 |
| Bbv12I | GWGCWC | 4 cut(s) | 517, 1135, 2530, 2575 |
| BccI | CCATC | 8 cut(s) | 206, 773, 1474, 1678, 2003, 3241, 3497, 3536 |
| BceAI | ACGGC | 5 cut(s) | 144, 374, 980, 3212, 3435 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 308, 342, 938, 972 |
| BciT130I | CCWGG | 7 cut(s) | 900, 908, 1047, 1199, 1944, 2070, 2229 |
| BciVI | GTATCC | 2 cut(s) | 323, 1648 |
| BclI | TGATCA | 2 cut(s) | 1783, 2586 |
| BcnI | CCSGG | 3 cut(s) | 1280, 3106, 3534 |
| BcoDI | GTCTC | 4 cut(s) | 877, 1566, 2466, 3062 |
| BfmI | CTRYAG | 2 cut(s) | 1509, 2414 |
| BfoI | RGCGCY | 2 cut(s) | 117, 176 |
| BfrI | CTTAAG | 1 cut(s) | 2642 |
| BfuI | GTATCC | 2 cut(s) | 323, 1648 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2728 |
| BglII | AGATCT | 1 cut(s) | 2418 |
| BmcAI | AGTACT | 1 cut(s) | 1449 |
| Bme18I | GGWCC | 3 cut(s) | 19, 2003, 3245 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1377 |
| BmgBI | CACGTC | 1 cut(s) | 373 |
| BmgT120I | GGNCC | 6 cut(s) | 19, 1152, 1269, 2003, 2729, 3245 |
| BmrI | ACTGGG | 2 cut(s) | 565, 1296 |
| BmuI | ACTGGG | 2 cut(s) | 565, 1296 |
| BpiI | GAAGAC | 4 cut(s) | 54, 1281, 1988, 3062 |
| BpmI | CTGGAG | 5 cut(s) | 1068, 1659, 1872, 3101, 3231 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3343 |
| Bpu14I | TTCGAA | 2 cut(s) | 1615, 2353 |
| BpuEI | CTTGAG | 2 cut(s) | 1301, 2352 |
| BpuMI | CCSGG | 3 cut(s) | 1280, 3106, 3534 |
| Bsa29I | ATCGAT | 1 cut(s) | 1527 |
| BsaAI | YACGTR | 1 cut(s) | 3517 |
| BsaHI | GRCGYC | 3 cut(s) | 56, 68, 1378 |
| BsaWI | WCCGGW | 1 cut(s) | 843 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2974, 3004, 3465, 3495 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 127, 1278, 2069, 2738, 3239, 3254, 3347, 3348, 3538 |
| Bse118I | RCCGGY | 3 cut(s) | 142, 783, 2941 |
| Bse3DI | GCAATG | 2 cut(s) | 1026, 1740 |
| BseAI | TCCGGA | 1 cut(s) | 843 |
| BseBI | CCWGG | 7 cut(s) | 900, 908, 1047, 1199, 1944, 2070, 2229 |
| BseCI | ATCGAT | 1 cut(s) | 1527 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 127, 1278, 2069, 2738, 3239, 3254, 3347, 3348, 3538 |
| BseMI | GCAATG | 2 cut(s) | 1026, 1740 |
| BseMII | CTCAG | 7 cut(s) | 978, 1181, 1548, 2463, 2477, 2497, 3066 |
| BseRI | GAGGAG | 4 cut(s) | 603, 895, 1065, 2214 |
| BseSI | GKGCMC | 2 cut(s) | 517, 3567 |
| BseX3I | CGGCCG | 2 cut(s) | 144, 3197 |
| BseYI | CCCAGC | 5 cut(s) | 1205, 2080, 2300, 2343, 3347 |
| BsgI | GTGCAG | 3 cut(s) | 1281, 1493, 2477 |
| Bsh1236I | CGCG | 2 cut(s) | 673, 2767 |
| Bsh1285I | CGRYCG | 2 cut(s) | 147, 3200 |
| BshNI | GGYRCC | 2 cut(s) | 1293, 3562 |
| BshVI | ATCGAT | 1 cut(s) | 1527 |
| BsiEI | CGRYCG | 2 cut(s) | 147, 3200 |
| BsiHKAI | GWGCWC | 4 cut(s) | 517, 1135, 2530, 2575 |
| BsiSI | CCGG | 9 cut(s) | 143, 147, 784, 844, 1279, 2942, 3105, 3200, 3534 |
| BslFI | GGGAC | 6 cut(s) | 826, 1752, 2523, 2687, 3121, 3231 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 127, 1278, 2069, 2738, 3239, 3254, 3347, 3348, 3538 |
| BsmAI | GTCTC | 4 cut(s) | 877, 1566, 2466, 3062 |
| BsmFI | GGGAC | 6 cut(s) | 826, 1752, 2523, 2687, 3121, 3231 |
| BsmI | GAATGC | 3 cut(s) | 759, 1611, 2330 |
| Bsp119I | TTCGAA | 2 cut(s) | 1615, 2353 |
| Bsp1286I | GDGCHC | 5 cut(s) | 517, 1135, 2530, 2575, 3567 |
| Bsp13I | TCCGGA | 1 cut(s) | 843 |
| Bsp1407I | TGTACA | 1 cut(s) | 2835 |
| Bsp19I | CCATGG | 1 cut(s) | 2724 |
| BspCNI | CTCAG | 7 cut(s) | 979, 1180, 1549, 2464, 2476, 2496, 3067 |
| BspDI | ATCGAT | 1 cut(s) | 1527 |
| BspEI | TCCGGA | 1 cut(s) | 843 |
| BspFNI | CGCG | 2 cut(s) | 673, 2767 |
| BspHI | TCATGA | 1 cut(s) | 2662 |
| BspQI | GCTCTTC | 1 cut(s) | 3279 |
| BspT104I | TTCGAA | 2 cut(s) | 1615, 2353 |
| BspT107I | GGYRCC | 2 cut(s) | 1293, 3562 |
| BspTI | CTTAAG | 1 cut(s) | 2642 |
| BsrDI | GCAATG | 2 cut(s) | 1026, 1740 |
| BsrFI | RCCGGY | 3 cut(s) | 142, 783, 2941 |
| BsrGI | TGTACA | 1 cut(s) | 2835 |
| BssAI | RCCGGY | 3 cut(s) | 142, 783, 2941 |
| BssNI | GRCGYC | 3 cut(s) | 56, 68, 1378 |
| BssSI | CACGAG | 1 cut(s) | 1134 |
| BssT1I | CCWWGG | 5 cut(s) | 931, 1140, 2521, 2724, 2908 |
| Bst2BI | CACGAG | 1 cut(s) | 1134 |
| Bst2UI | CCWGG | 7 cut(s) | 900, 908, 1047, 1199, 1944, 2070, 2229 |
| Bst4CI | ACNGT | 4 cut(s) | 732, 923, 2124, 3257 |
| Bst6I | CTCTTC | 8 cut(s) | 52, 149, 158, 1481, 1911, 3000, 3279, 3471 |
| BstACI | GRCGYC | 3 cut(s) | 56, 68, 1378 |
| BstAFI | CTTAAG | 1 cut(s) | 2642 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 302, 2189 |
| BstAUI | TGTACA | 1 cut(s) | 2835 |
| BstBAI | YACGTR | 1 cut(s) | 3517 |
| BstBI | TTCGAA | 2 cut(s) | 1615, 2353 |
| BstC8I | GCNNGC | 9 cut(s) | 118, 144, 387, 684, 785, 969, 1711, 1869, 2765 |
| BstDSI | CCRYGG | 2 cut(s) | 2724, 3126 |
| BstFNI | CGCG | 2 cut(s) | 673, 2767 |
| BstH2I | RGCGCY | 2 cut(s) | 117, 176 |
| BstHHI | GCGC | 4 cut(s) | 94, 116, 175, 673 |
| BstMAI | GTCTC | 4 cut(s) | 877, 1566, 2466, 3062 |
| BstMCI | CGRYCG | 2 cut(s) | 147, 3200 |
| BstNI | CCWGG | 7 cut(s) | 900, 908, 1047, 1199, 1944, 2070, 2229 |
| BstNSI | RCATGY | 5 cut(s) | 971, 1040, 1544, 1871, 1989 |
| BstSFI | CTRYAG | 2 cut(s) | 1509, 2414 |
| BstSLI | GKGCMC | 2 cut(s) | 517, 3567 |
| BstUI | CGCG | 2 cut(s) | 673, 2767 |
| BstV2I | GAAGAC | 4 cut(s) | 54, 1281, 1988, 3062 |
| BstX2I | RGATCY | 9 cut(s) | 4, 540, 895, 1003, 1201, 1923, 2418, 2860, 3356 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3368 |
| BstYI | RGATCY | 9 cut(s) | 4, 540, 895, 1003, 1201, 1923, 2418, 2860, 3356 |
| BstZI | CGGCCG | 2 cut(s) | 144, 3197 |
| Bsu15I | ATCGAT | 1 cut(s) | 1527 |
| BsuI | GTATCC | 2 cut(s) | 323, 1648 |
| BsuTUI | ATCGAT | 1 cut(s) | 1527 |
| BtgI | CCRYGG | 2 cut(s) | 2724, 3126 |
| BtrI | CACGTC | 1 cut(s) | 373 |
| BtsI | GCAGTG | 4 cut(s) | 452, 1542, 2952, 3435 |
| BtsIMutI | CAGTG | 7 cut(s) | 452, 528, 1542, 1748, 2341, 2952, 3435 |
| Cac8I | GCNNGC | 9 cut(s) | 118, 144, 387, 684, 785, 969, 1711, 1869, 2765 |
| CaiI | CAGNNNCTG | 4 cut(s) | 509, 959, 1046, 2855 |
| CciI | TCATGA | 1 cut(s) | 2662 |
| CfoI | GCGC | 4 cut(s) | 94, 116, 175, 673 |
| Cfr10I | RCCGGY | 3 cut(s) | 142, 783, 2941 |
| Cfr13I | GGNCC | 6 cut(s) | 19, 1152, 1269, 2003, 2729, 3245 |
| ClaI | ATCGAT | 1 cut(s) | 1527 |
| CseI | GACGC | 4 cut(s) | 21, 57, 1367, 2100 |
| DraIII | CACNNNGTG | 1 cut(s) | 521 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 58, 413 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1377 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 58, 413 |
| EaeI | YGGCCR | 4 cut(s) | 144, 489, 781, 3197 |
| EagI | CGGCCG | 2 cut(s) | 144, 3197 |
| Eam1104I | CTCTTC | 8 cut(s) | 52, 149, 158, 1481, 1911, 3000, 3279, 3471 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1377 |
| EarI | CTCTTC | 8 cut(s) | 52, 149, 158, 1481, 1911, 3000, 3279, 3471 |
| EciI | GGCGGA | 3 cut(s) | 31, 3180, 3282 |
| Ecl136II | GAGCTC | 1 cut(s) | 2528 |
| EclXI | CGGCCG | 2 cut(s) | 144, 3197 |
| Eco130I | CCWWGG | 5 cut(s) | 931, 1140, 2521, 2724, 2908 |
| Eco147I | AGGCCT | 2 cut(s) | 2520, 3025 |
| Eco24I | GRGCYC | 1 cut(s) | 2530 |
| Eco32I | GATATC | 3 cut(s) | 12, 1525, 3150 |
| Eco47I | GGWCC | 3 cut(s) | 19, 2003, 3245 |
| Eco47III | AGCGCT | 1 cut(s) | 115 |
| Eco52I | CGGCCG | 2 cut(s) | 144, 3197 |
| Eco53kI | GAGCTC | 1 cut(s) | 2528 |
| Eco57I | CTGAAG | 4 cut(s) | 2303, 2877, 3012, 3392 |
| EcoICRI | GAGCTC | 1 cut(s) | 2528 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3245 |
| EcoRI | GAATTC | 1 cut(s) | 2426 |
| EcoRII | CCWGG | 7 cut(s) | 898, 906, 1045, 1197, 1942, 2068, 2227 |
| EcoRV | GATATC | 3 cut(s) | 12, 1525, 3150 |
| EcoT14I | CCWWGG | 5 cut(s) | 931, 1140, 2521, 2724, 2908 |
| EcoT22I | ATGCAT | 2 cut(s) | 973, 2481 |
| EcoT38I | GRGCYC | 1 cut(s) | 2530 |
| ErhI | CCWWGG | 5 cut(s) | 931, 1140, 2521, 2724, 2908 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1609, 1641 |
| FaqI | GGGAC | 6 cut(s) | 826, 1752, 2523, 2687, 3121, 3231 |
| FauI | CCCGC | 2 cut(s) | 3463, 3547 |
| FauNDI | CATATG | 1 cut(s) | 703 |
| FbaI | TGATCA | 2 cut(s) | 1783, 2586 |
| FblI | GTMKAC | 2 cut(s) | 393, 2097 |
| FriOI | GRGCYC | 1 cut(s) | 2530 |
| GlaI | GCGC | 4 cut(s) | 93, 115, 174, 672 |
| GsaI | CCCAGC | 5 cut(s) | 1209, 2084, 2304, 2347, 3351 |
| GsuI | CTGGAG | 5 cut(s) | 1068, 1659, 1872, 3101, 3231 |
| HaeII | RGCGCY | 2 cut(s) | 117, 176 |
| HapII | CCGG | 9 cut(s) | 143, 147, 784, 844, 1279, 2942, 3105, 3200, 3534 |
| HgaI | GACGC | 4 cut(s) | 21, 57, 1367, 2100 |
| HhaI | GCGC | 4 cut(s) | 94, 116, 175, 673 |
| Hin1I | GRCGYC | 3 cut(s) | 56, 68, 1378 |
| Hin6I | GCGC | 4 cut(s) | 92, 114, 173, 671 |
| HinP1I | GCGC | 4 cut(s) | 92, 114, 173, 671 |
| HincII | GTYRAC | 3 cut(s) | 406, 3484, 3580 |
| HindII | GTYRAC | 3 cut(s) | 406, 3484, 3580 |
| HindIII | AAGCTT | 2 cut(s) | 383, 684 |
| HpaI | GTTAAC | 1 cut(s) | 3580 |
| HpaII | CCGG | 9 cut(s) | 143, 147, 784, 844, 1279, 2942, 3105, 3200, 3534 |
| HphI | GGTGA | 4 cut(s) | 2411, 2924, 3269, 3297 |
| Hpy99I | CGWCG | 8 cut(s) | 19, 37, 55, 58, 61, 73, 130, 419 |
| HpyAV | CCTTC | 9 cut(s) | 105, 131, 432, 685, 1336, 1344, 1404, 3036, 3189 |
| HpyCH4III | ACNGT | 4 cut(s) | 732, 923, 2124, 3257 |
| HpyCH4IV | ACGT | 6 cut(s) | 56, 372, 2090, 2438, 2700, 3516 |
| HpySE526I | ACGT | 6 cut(s) | 56, 372, 2090, 2438, 2700, 3516 |
| Hsp92I | GRCGYC | 3 cut(s) | 56, 68, 1378 |
| HspAI | GCGC | 4 cut(s) | 92, 114, 173, 671 |
| Kpn2I | TCCGGA | 1 cut(s) | 843 |
| KpnI | GGTACC | 1 cut(s) | 1297 |
| KroI | GCCGGC | 2 cut(s) | 142, 783 |
| KroNI | GCCGGC | 2 cut(s) | 144, 785 |
| Ksp22I | TGATCA | 2 cut(s) | 1783, 2586 |
| KspAI | GTTAAC | 1 cut(s) | 3580 |
| LguI | GCTCTTC | 1 cut(s) | 3279 |
| LmnI | GCTCC | 5 cut(s) | 1052, 1997, 2504, 2525, 2995 |
| MaeII | ACGT | 6 cut(s) | 56, 372, 2090, 2438, 2700, 3516 |
| MaeIII | GTNAC | 7 cut(s) | 592, 848, 1900, 2035, 2696, 3303, 3310 |
| MfeI | CAATTG | 2 cut(s) | 1659, 1701 |
| MflI | RGATCY | 9 cut(s) | 4, 540, 895, 1003, 1201, 1923, 2418, 2860, 3356 |
| MhlI | GDGCHC | 5 cut(s) | 517, 1135, 2530, 2575, 3567 |
| MlsI | TGGCCA | 1 cut(s) | 491 |
| MluNI | TGGCCA | 1 cut(s) | 491 |
| MlyI | GAGTC | 6 cut(s) | 1224, 1498, 1568, 1879, 2916, 3335 |
| MmeI | TCCRAC | 5 cut(s) | 149, 565, 873, 1395, 1975 |
| Mox20I | TGGCCA | 1 cut(s) | 491 |
| Mph1103I | ATGCAT | 2 cut(s) | 973, 2481 |
| MroI | TCCGGA | 1 cut(s) | 843 |
| MroNI | GCCGGC | 2 cut(s) | 142, 783 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1611, 1621, 1624 |
| MscI | TGGCCA | 1 cut(s) | 491 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1077, 1257, 2610 |
| Msp20I | TGGCCA | 1 cut(s) | 491 |
| MspA1I | CMGCKG | 4 cut(s) | 2159, 2343, 2807, 3470 |
| MspCI | CTTAAG | 1 cut(s) | 2642 |
| MspI | CCGG | 9 cut(s) | 143, 147, 784, 844, 1279, 2942, 3105, 3200, 3534 |
| MunI | CAATTG | 2 cut(s) | 1659, 1701 |
| Mva1269I | GAATGC | 3 cut(s) | 759, 1611, 2330 |
| MvaI | CCWGG | 7 cut(s) | 900, 908, 1047, 1199, 1944, 2070, 2229 |
| MvnI | CGCG | 2 cut(s) | 673, 2767 |
| NaeI | GCCGGC | 2 cut(s) | 144, 785 |
| NciI | CCSGG | 3 cut(s) | 1280, 3106, 3534 |
| NcoI | CCATGG | 1 cut(s) | 2724 |
| NdeI | CATATG | 1 cut(s) | 703 |
| NgoMIV | GCCGGC | 2 cut(s) | 142, 783 |
| NmuCI | GTSAC | 3 cut(s) | 1900, 3303, 3310 |
| NsiI | ATGCAT | 2 cut(s) | 973, 2481 |
| NspI | RCATGY | 5 cut(s) | 971, 1040, 1544, 1871, 1989 |
| NspV | TTCGAA | 2 cut(s) | 1615, 2353 |
| PaeI | GCATGC | 2 cut(s) | 971, 1871 |
| PagI | TCATGA | 1 cut(s) | 2662 |
| PceI | AGGCCT | 2 cut(s) | 2520, 3025 |
| PciI | ACATGT | 1 cut(s) | 1985 |
| PciSI | GCTCTTC | 1 cut(s) | 3279 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 20, 56, 65 |
| PctI | GAATGC | 3 cut(s) | 759, 1611, 2330 |
| PdiI | GCCGGC | 2 cut(s) | 144, 785 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1611, 1621, 1624 |
| PflFI | GACNNNGTC | 2 cut(s) | 55, 58 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2069, 2738 |
| PfoI | TCCNGGA | 3 cut(s) | 898, 1197, 3104 |
| PleI | GAGTC | 6 cut(s) | 1223, 1497, 1567, 1879, 2916, 3334 |
| PpsI | GAGTC | 6 cut(s) | 1223, 1497, 1567, 1879, 2916, 3334 |
| Ppu21I | YACGTR | 1 cut(s) | 3517 |
| PpuMI | RGGWCCY | 1 cut(s) | 3245 |
| PscI | ACATGT | 1 cut(s) | 1985 |
| PshBI | ATTAAT | 1 cut(s) | 1587 |
| Psp124BI | GAGCTC | 1 cut(s) | 2530 |
| Psp5II | RGGWCCY | 1 cut(s) | 3245 |
| Psp6I | CCWGG | 7 cut(s) | 898, 906, 1045, 1197, 1942, 2068, 2227 |
| PspFI | CCCAGC | 5 cut(s) | 1205, 2080, 2300, 2343, 3347 |
| PspGI | CCWGG | 7 cut(s) | 898, 906, 1045, 1197, 1942, 2068, 2227 |
| PspPI | GGNCC | 6 cut(s) | 19, 1152, 1269, 2003, 2729, 3245 |
| PspPPI | RGGWCCY | 1 cut(s) | 3245 |
| PstNI | CAGNNNCTG | 4 cut(s) | 509, 959, 1046, 2855 |
| PsuI | RGATCY | 9 cut(s) | 4, 540, 895, 1003, 1201, 1923, 2418, 2860, 3356 |
| PsyI | GACNNNGTC | 2 cut(s) | 55, 58 |
| PvuII | CAGCTG | 3 cut(s) | 2159, 2343, 2807 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1077, 1257, 2610 |
| SacI | GAGCTC | 1 cut(s) | 2530 |
| SapI | GCTCTTC | 1 cut(s) | 3279 |
| Sau96I | GGNCC | 6 cut(s) | 19, 1152, 1269, 2003, 2729, 3245 |
| ScaI | AGTACT | 1 cut(s) | 1449 |
| SchI | GAGTC | 6 cut(s) | 1224, 1498, 1568, 1879, 2916, 3335 |
| SduI | GDGCHC | 5 cut(s) | 517, 1135, 2530, 2575, 3567 |
| SfcI | CTRYAG | 2 cut(s) | 1509, 2414 |
| SfuI | TTCGAA | 2 cut(s) | 1615, 2353 |
| SinI | GGWCC | 3 cut(s) | 19, 2003, 3245 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1077, 1257, 2610 |
| SmlI | CTYRAG | 3 cut(s) | 1316, 2367, 2642 |
| SmoI | CTYRAG | 3 cut(s) | 1316, 2367, 2642 |
| SphI | GCATGC | 2 cut(s) | 971, 1871 |
| SseBI | AGGCCT | 2 cut(s) | 2520, 3025 |
| SspI | AATATT | 2 cut(s) | 1585, 2776 |
| SstI | GAGCTC | 1 cut(s) | 2530 |
| StuI | AGGCCT | 2 cut(s) | 2520, 3025 |
| StyI | CCWWGG | 5 cut(s) | 931, 1140, 2521, 2724, 2908 |
| TaaI | ACNGT | 4 cut(s) | 732, 923, 2124, 3257 |
| TaiI | ACGT | 6 cut(s) | 59, 375, 2093, 2441, 2703, 3519 |
| TaqI | TCGA | 9 cut(s) | 50, 71, 161, 1527, 1615, 1729, 2353, 2751, 3146 |
| TatI | WGTACW | 3 cut(s) | 1447, 2149, 2835 |
| TauI | GCSGC | 5 cut(s) | 86, 173, 209, 2276, 2770 |
| TscAI | CASTG | 7 cut(s) | 452, 535, 1542, 1755, 2341, 2952, 3442 |
| TseFI | GTSAC | 3 cut(s) | 1900, 3303, 3310 |
| Tsp45I | GTSAC | 3 cut(s) | 1900, 3303, 3310 |
| TspGWI | ACGGA | 4 cut(s) | 403, 879, 1418, 2934 |
| TspRI | CASTG | 7 cut(s) | 452, 535, 1542, 1755, 2341, 2952, 3442 |
| Tth111I | GACNNNGTC | 2 cut(s) | 55, 58 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2069, 2738 |
| Vha464I | CTTAAG | 1 cut(s) | 2642 |
| VneI | GTGCAC | 1 cut(s) | 513 |
| VpaK11BI | GGWCC | 3 cut(s) | 19, 2003, 3245 |
| VspI | ATTAAT | 1 cut(s) | 1587 |
| XapI | RAATTY | 6 cut(s) | 495, 662, 978, 2426, 2820, 2963 |
| XbaI | TCTAGA | 1 cut(s) | 1127 |
| XceI | RCATGY | 5 cut(s) | 971, 1040, 1544, 1871, 1989 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 552 |
| XmiI | GTMKAC | 2 cut(s) | 393, 2097 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1611, 1621, 1624 |
| ZraI | GACGTC | 1 cut(s) | 57 |
| ZrmI | AGTACT | 1 cut(s) | 1449 |
| Zsp2I | ATGCAT | 2 cut(s) | 973, 2481 |