Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004649

Physical Location & Seq

Genomic Coordinates Forward (+)

264102 .. 312909

Gene Structure 48808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG001400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2034 bp

ATGGAAGTTGTGCTGACAACTGTGGCATGCGAGTGTGTTTATGTTCGAGCAATGCTTATTAAGGCATTGATCTGGATGCAAAGAATAGATCATGAAGATACAAGAATGCCTAAAGTTCAGATCAAAGGAGAGCAGAACAACTTTGCGTTCTATACAATCAAGGTTTCAGGCTATTCTAAAGCTACTAAACTGTCAACTGACAGGCTCCCTGTAATCCAAAAAGACAAGGCAACTCTAGATATGGTCGTCACTCTTCTTGAAATTGCAAGGATCTTTGCAACTAAAGCCCCCGGGAAGATCGATGCTGATGTACTACAACTACTGTGGAAGACTTGTCTTGTTGGAGCTGGTCCTGATGGGAAACACACTGCATTAGAAGCGGTTACCATAGTTCTCGATTTACCACCACCACAACCTGGGTCAATGTTGGGCCTTACATCAGTTGGCAGGGTATCTGCTTCTGATCCAAAGGCAGCCCTGGCCTTACAGAGATTAGTACAAGAAGCAGTATGGTTCCTTGGAGAAAATGCAAATTATGCTGCTTCTGAATATGCTTGGGAATCTGCAACCCCTCCTGGTACCGCATTGATGATGCTAGATACAGATAAAATGGTTGCTGCTGCCAGTTCCCGCAACCCTACTCTAGCTGGTGCATTGACTAGGCTACAGAGGTGTGCATTCAGTGGCAGCTGGGAGGTTCGGATCATTGCTGCTCAAGCTCTCACAACTATGGCAATAAGAGCTGGTGAGCCTTTTAGGCTACAAATCTATCAATTTTTACACACTATAGCAGAGGGCGGAGTGCAGTCTCAGTTTTCTGAGATGCATCCCAGTAATGGAGAAGACCAGGGAGCTAGTGGCACAGGCCTCGGAGTTCTAATCAGTCCCATGATAGAGGTTCTTGATGAAATGTATAGGGCACAAGATGATTTGATCAAGGAAATGCGCAACCATGATAATGCTAATAAGGAATGGAGTCCAAAACAGGATACGACGTATTCAGACCGTATCCAAAACAGGATCCGCGAATGGACAGATGAAGAGCTTAAGAAACTCTATGAAACCCATGAAAGGTTGCTTGATCTTGTTTCTCTGTTTTGTTATGTTCCAAGAGCAAAATATCTGCCTTTGGGGCCAATAAGTGCAAAACTTATCGACATCTATCGCACTAGGCACAATATTAGTGCATCAACTGGTTTGAGTGATCCAGCTGTTGCTACTGGAATTTCTGATCTTATGTATGAATCTAAACCAGCAGCTGTAGAGCCTGATGCGCTTGATGATGACCTTGTAAATGCTTGGGCAGCAAACCTTGGTGATGACGGACCGTTAGGAAATAATGCACCAGCAATGAGCAGGGTTAATGAATTTCTAGCCGGTGCTGGAACTGATGCTCCTGATGTTGATGAGGAAAACATCATCTCTAGGCCGTCAGTTGGTTACGATGATATGTGGGCAAAGACCCTATTAGAGACTTCAGAACTGGAGGAAGAAGACGCGAGGTCATCCGGGACATCTTCACCTGAATCAACAGGCTCGGTCGAAACTTCCATATCATCGCATTTTGGGGGAATGAATTACCCTTCACTTTTCAGTTCACGGCCGGAGAGGTCTGGAGGAAGCAGATGTAGCAATCCATCTATGGGGGGTCCCTCATTCAGTGAGGGTTTAGGATCTCCAAGAAGAGCCTCCGCCATACTCGTCACCTGCAAGGCTGCAACGCAAAGATTTGAGTCGTTTGAGAATCCCTTAGCCCCCAGATCCCAGAGTTTTGGATCCCAAGATGACGAACGCGTTTCTTCTGGAAATCCTCAACATGGAACAGCACTTTATGACTTCACTGCTGGTGGAGATGATGAGTTAAATTTAACAGCTGGAGAGCAGGTTGATATCGAGTACGAAGTGGATGGCTGGTTTTATGTAAGTACAGGGTGCATAGGTTTAAACAATATTTGTGGTTTGTCGGTGCTCCAATATCTGGAAAGCAAGATTTCATCAATGTGTCCTTCCCCCTCTATGTTTTATTATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_1 SH3_9

Protein Analysis

677

Amino Acids

73.76

Weight (kDa)

4.75

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07360 AT2G07360
fragaria_vesca	FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210 FvH4_4g00210
malus_domestica	MD04G1002300.v1.1 MD07G1055200.v1.1 MD15G1427900.v1.1
prunus_persica	Prupe.7G042600_v2.0.a1 Prupe.7G042600_v2.0.a1
pyrus_communis	pycom04g00260
rosa_chinensis	RchiOBHm_Chr4g0384831 RchiOBHm_Chr4g0384941
rosa_laevigata	RLG00000010266
rosa_multiflora	Rmu_sc0003822.1_g000020 Rmu_sc0003822.1_g000021
rosa_roxburghii	Rroxscaffold_5G00332880
rosa_rugosa	Rorug03G0298100 Rorug03G0298200 Rorug03G0298300
rosa_samantha	Rh4AG001900 Rh4BG001700 Rh4CG001400 Rh4CG002100 Rh4DG001500
rosa_wichuraiana	Rw4G000720 Rw4G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1715
Acc16I	TGCGCA	1 cut(s)	947
Acc36I	ACCTGC	2 cut(s)	1715, 1873
Acc65I	GGTACC	1 cut(s)	578
AccB1I	GGYRCC	1 cut(s)	578
AccB7I	CCANNNNNTGG	2 cut(s)	416, 1978
AccII	CGCG	3 cut(s)	1026, 1499, 1794
AciI	CCGC	6 cut(s)	380, 582, 631, 798, 1024, 1692
AcoI	YGGCCR	1 cut(s)	1601
AcsI	RAATTY	3 cut(s)	1224, 1367, 1864
AcuI	CTGAAG	1 cut(s)	1461
AfaI	GTAC	5 cut(s)	312, 498, 580, 1898, 1927
AfiI	CCNNNNNNNGG	7 cut(s)	416, 836, 1071, 1436, 1643, 1817, 1978
AflII	CTTAAG	1 cut(s)	1046
AflIII	ACRYGT	1 cut(s)	1792
AgsI	TTSAA	1 cut(s)	260
AhdI	GACNNNNNGTC	1 cut(s)	1501
AjnI	CCWGG	4 cut(s)	415, 477, 574, 846
AloI	GAACNNNNNNTCC	2 cut(s)	1378, 1410
Alw21I	GWGCWC	1 cut(s)	1971
Alw26I	GTCTC	2 cut(s)	813, 1466
AlwNI	CAGNNNCTG	1 cut(s)	1259
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	6 cut(s)	430, 480, 865, 1133, 1427, 1601
ApeKI	GCWGC	9 cut(s)	473, 539, 617, 620, 687, 710, 1256, 1304, 1715
ApoI	RAATTY	3 cut(s)	1224, 1367, 1864
Asp718I	GGTACC	1 cut(s)	578
AspLEI	GCGC	2 cut(s)	948, 1276
AspS9I	GGNCC	5 cut(s)	350, 430, 1133, 1325, 1649
AsuC2I	CCSGG	3 cut(s)	291, 292, 1510
AsuHPI	GGTGA	4 cut(s)	758, 1328, 1512, 1696
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	3 cut(s)	350, 1325, 1649
BaeGI	GKGCMC	1 cut(s)	922
BamHI	GGATCC	2 cut(s)	1020, 1775
BanI	GGYRCC	1 cut(s)	578
BbsI	GAAGAC	3 cut(s)	335, 849, 1500
Bbv12I	GWGCWC	1 cut(s)	1971
BbvI	GCAGC	9 cut(s)	485, 526, 604, 607, 697, 699, 1268, 1316, 1702
BccI	CCATC	3 cut(s)	350, 1645, 1901
BceAI	ACGGC	2 cut(s)	1414, 1616
BcgI	CGANNNNNNTGC	2 cut(s)	850, 884
BciT130I	CCWGG	4 cut(s)	417, 479, 576, 848
BciVI	GTATCC	2 cut(s)	982, 1019
BclI	TGATCA	1 cut(s)	933
BcnI	CCSGG	3 cut(s)	291, 292, 1510
BcoDI	GTCTC	2 cut(s)	813, 1466
BfaI	CTAG	8 cut(s)	236, 596, 644, 660, 855, 1170, 1373, 1425
BfmI	CTRYAG	3 cut(s)	665, 786, 1260
BfrI	CTTAAG	1 cut(s)	1046
BfuAI	ACCTGC	2 cut(s)	1715, 1873
BfuI	GTATCC	2 cut(s)	982, 1019
BglI	GCCNNNNNGGC	2 cut(s)	757, 1132
BisI	GCNGC	9 cut(s)	474, 540, 618, 621, 688, 711, 1257, 1305, 1716
BlsI	GCNGC	9 cut(s)	475, 541, 619, 622, 689, 712, 1258, 1306, 1717
Bme1390I	CCNGG	7 cut(s)	291, 292, 417, 479, 576, 848, 1510
Bme18I	GGWCC	3 cut(s)	350, 1325, 1649
BmeRI	GACNNNNNGTC	1 cut(s)	1501
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	5 cut(s)	350, 430, 1133, 1325, 1649
BmiI	GGNNCC	8 cut(s)	206, 515, 580, 1022, 1134, 1650, 1651, 1777
BmrFI	CCNGG	7 cut(s)	291, 292, 417, 479, 576, 848, 1510
BmrI	ACTGGG	1 cut(s)	825
BmsI	GCATC	8 cut(s)	66, 292, 582, 813, 835, 1196, 1261, 1381
BmuI	ACTGGG	1 cut(s)	825
BpiI	GAAGAC	3 cut(s)	335, 849, 1500
BpmI	CTGGAG	3 cut(s)	1505, 1635, 1896
Bpu10I	CCTNAGC	1 cut(s)	1750
BpuEI	CTTGAG	1 cut(s)	699
BpuMI	CCSGG	3 cut(s)	291, 292, 1510
Bsa29I	ATCGAT	1 cut(s)	300
BsaJI	CCNNGG	8 cut(s)	289, 290, 416, 477, 517, 847, 868, 1312
BsaXI	ACNNNNNCTCC	4 cut(s)	1378, 1408, 1869, 1899
Bsc4I	CCNNNNNNNGG	7 cut(s)	416, 836, 1071, 1436, 1643, 1817, 1978
Bse118I	RCCGGY	1 cut(s)	1376
Bse1I	ACTGG	5 cut(s)	624, 831, 1198, 1225, 1488
Bse3DI	GCAATG	3 cut(s)	57, 705, 1356
BseBI	CCWGG	4 cut(s)	417, 479, 576, 848
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	8 cut(s)	289, 290, 416, 477, 517, 847, 868, 1312
BseGI	GGATG	4 cut(s)	81, 826, 1505, 1912
BseLI	CCNNNNNNNGG	7 cut(s)	416, 836, 1071, 1436, 1643, 1817, 1978
BseMI	GCAATG	3 cut(s)	57, 705, 1356
BseMII	CTCAG	2 cut(s)	810, 824
BseNI	ACTGG	5 cut(s)	624, 831, 1198, 1225, 1488
BseSI	GKGCMC	1 cut(s)	922
BseX3I	CGGCCG	1 cut(s)	1601
BseXI	GCAGC	9 cut(s)	485, 526, 604, 607, 697, 699, 1268, 1316, 1702
BseYI	CCCAGC	1 cut(s)	690
BsgI	GTGCAG	1 cut(s)	824
Bsh1236I	CGCG	3 cut(s)	1026, 1499, 1794
Bsh1285I	CGRYCG	2 cut(s)	1542, 1604
BshFI	GGCC	6 cut(s)	432, 482, 867, 1135, 1429, 1603
BshNI	GGYRCC	1 cut(s)	578
BshVI	ATCGAT	1 cut(s)	300
BsiEI	CGRYCG	2 cut(s)	1542, 1604
BsiHKAI	GWGCWC	1 cut(s)	1971
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	4 cut(s)	291, 1377, 1509, 1604
BslFI	GGGAC	3 cut(s)	870, 1525, 1635
BslI	CCNNNNNNNGG	7 cut(s)	416, 836, 1071, 1436, 1643, 1817, 1978
BsmAI	GTCTC	2 cut(s)	813, 1466
BsmFI	GGGAC	3 cut(s)	870, 1525, 1635
BsmI	GAATGC	2 cut(s)	111, 677
BsnI	GGCC	6 cut(s)	432, 482, 867, 1135, 1429, 1603
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	922, 1971
BspACI	CCGC	6 cut(s)	380, 582, 631, 798, 1024, 1692
BspANI	GGCC	6 cut(s)	432, 482, 867, 1135, 1429, 1603
BspCNI	CTCAG	2 cut(s)	811, 823
BspDI	ATCGAT	1 cut(s)	300
BspFNI	CGCG	3 cut(s)	1026, 1499, 1794
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	8 cut(s)	206, 515, 580, 1022, 1134, 1650, 1651, 1777
BspMI	ACCTGC	2 cut(s)	1715, 1873
BspQI	GCTCTTC	2 cut(s)	1035, 1678
BspT107I	GGYRCC	1 cut(s)	578
BspTI	CTTAAG	1 cut(s)	1046
BsrDI	GCAATG	3 cut(s)	57, 705, 1356
BsrFI	RCCGGY	1 cut(s)	1376
BsrI	ACTGG	5 cut(s)	624, 831, 1198, 1225, 1488
BssAI	RCCGGY	1 cut(s)	1376
BssECI	CCNNGG	8 cut(s)	289, 290, 416, 477, 517, 847, 868, 1312
BssT1I	CCWWGG	2 cut(s)	517, 1312
Bst2UI	CCWGG	4 cut(s)	417, 479, 576, 848
Bst4CI	ACNGT	5 cut(s)	22, 192, 324, 1007, 1329
Bst6I	CTCTTC	3 cut(s)	258, 1035, 1678
BstAFI	CTTAAG	1 cut(s)	1046
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	3 cut(s)	810, 819, 1750
BstEII	GGTNACC	1 cut(s)	382
BstF5I	GGATG	4 cut(s)	81, 826, 1505, 1912
BstFNI	CGCG	3 cut(s)	1026, 1499, 1794
BstHHI	GCGC	2 cut(s)	948, 1276
BstMAI	GTCTC	2 cut(s)	813, 1466
BstMCI	CGRYCG	2 cut(s)	1542, 1604
BstNI	CCWGG	4 cut(s)	417, 479, 576, 848
BstNSI	RCATGY	1 cut(s)	30
BstPI	GGTNACC	1 cut(s)	382
BstSCI	CCNGG	7 cut(s)	289, 290, 415, 477, 574, 846, 1508
BstSFI	CTRYAG	3 cut(s)	665, 786, 1260
BstSLI	GKGCMC	1 cut(s)	922
BstUI	CGCG	3 cut(s)	1026, 1499, 1794
BstV1I	GCAGC	9 cut(s)	485, 526, 604, 607, 697, 699, 1268, 1316, 1702
BstV2I	GAAGAC	3 cut(s)	335, 849, 1500
BstX2I	RGATCY	5 cut(s)	270, 1020, 1673, 1760, 1775
BstXI	CCANNNNNNTGG	1 cut(s)	1772
BstYI	RGATCY	5 cut(s)	270, 1020, 1673, 1760, 1775
BstZI	CGGCCG	1 cut(s)	1601
Bsu15I	ATCGAT	1 cut(s)	300
BsuI	GTATCC	2 cut(s)	982, 1019
BsuRI	GGCC	6 cut(s)	432, 482, 867, 1135, 1429, 1603
BsuTUI	ATCGAT	1 cut(s)	300
BtgZI	GCGATG	1 cut(s)	1542
BtsCI	GGATG	4 cut(s)	81, 826, 1505, 1912
BtsI	GCAGTG	2 cut(s)	366, 1839
BtsIMutI	CAGTG	4 cut(s)	366, 688, 1666, 1839
BveI	ACCTGC	2 cut(s)	1715, 1873
Cac8I	GCNNGC	1 cut(s)	28
CaiI	CAGNNNCTG	1 cut(s)	1259
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	2 cut(s)	948, 1276
Cfr10I	RCCGGY	1 cut(s)	1376
Cfr13I	GGNCC	5 cut(s)	350, 430, 1133, 1325, 1649
Cfr9I	CCCGGG	1 cut(s)	290
ClaI	ATCGAT	1 cut(s)	300
CpoI	CGGWCCG	1 cut(s)	1325
CseI	GACGC	1 cut(s)	1505
Csp6I	GTAC	5 cut(s)	311, 497, 579, 1897, 1926
CspCI	CAANNNNNGTGG	4 cut(s)	305, 340, 1936, 1971
CspI	CGGWCCG	1 cut(s)	1325
CviAII	CATG	6 cut(s)	27, 92, 889, 953, 1067, 1817
CviQI	GTAC	5 cut(s)	311, 497, 579, 1897, 1926
DdeI	CTNAG	3 cut(s)	810, 819, 1750
DraI	TTTAAA	1 cut(s)	1944
DriI	GACNNNNNGTC	1 cut(s)	1501
EaeI	YGGCCR	1 cut(s)	1601
EagI	CGGCCG	1 cut(s)	1601
Eam1104I	CTCTTC	3 cut(s)	258, 1035, 1678
Eam1105I	GACNNNNNGTC	1 cut(s)	1501
EarI	CTCTTC	3 cut(s)	258, 1035, 1678
EciI	GGCGGA	2 cut(s)	813, 1681
EclXI	CGGCCG	1 cut(s)	1601
Eco130I	CCWWGG	2 cut(s)	517, 1312
Eco147I	AGGCCT	1 cut(s)	867
Eco32I	GATATC	1 cut(s)	1891
Eco47I	GGWCC	3 cut(s)	350, 1325, 1649
Eco52I	CGGCCG	1 cut(s)	1601
Eco57I	CTGAAG	1 cut(s)	1461
Eco88I	CYCGRG	1 cut(s)	290
Eco91I	GGTNACC	1 cut(s)	382
EcoO109I	RGGNCCY	1 cut(s)	1649
EcoO65I	GGTNACC	1 cut(s)	382
EcoRII	CCWGG	4 cut(s)	415, 477, 574, 846
EcoRV	GATATC	1 cut(s)	1891
EcoT14I	CCWWGG	2 cut(s)	517, 1312
EcoT22I	ATGCAT	1 cut(s)	828
ErhI	CCWWGG	2 cut(s)	517, 1312
FaeI	CATG	6 cut(s)	30, 95, 892, 956, 1070, 1820
FaqI	GGGAC	3 cut(s)	870, 1525, 1635
FatI	CATG	6 cut(s)	26, 91, 888, 952, 1066, 1816
FauI	CCCGC	1 cut(s)	638
FbaI	TGATCA	1 cut(s)	933
Fnu4HI	GCNGC	9 cut(s)	474, 540, 618, 621, 688, 711, 1257, 1305, 1716
FokI	GGATG	4 cut(s)	88, 813, 1492, 1919
Fsp4HI	GCNGC	9 cut(s)	474, 540, 618, 621, 688, 711, 1257, 1305, 1716
FspBI	CTAG	8 cut(s)	236, 596, 644, 660, 855, 1170, 1373, 1425
FspI	TGCGCA	1 cut(s)	947
GlaI	GCGC	2 cut(s)	947, 1275
GluI	GCNGC	9 cut(s)	474, 540, 618, 621, 688, 711, 1257, 1305, 1716
GsaI	CCCAGC	1 cut(s)	694
GsuI	CTGGAG	3 cut(s)	1505, 1635, 1896
HaeIII	GGCC	6 cut(s)	432, 482, 867, 1135, 1429, 1603
HapII	CCGG	4 cut(s)	291, 1377, 1509, 1604
HgaI	GACGC	1 cut(s)	1505
HhaI	GCGC	2 cut(s)	948, 1276
Hin1II	CATG	6 cut(s)	30, 95, 892, 956, 1070, 1820
Hin6I	GCGC	2 cut(s)	946, 1274
HinP1I	GCGC	2 cut(s)	946, 1274
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	6 cut(s)	560, 976, 1244, 1526, 1733, 1744
HpaII	CCGG	4 cut(s)	291, 1377, 1509, 1604
HphI	GGTGA	4 cut(s)	758, 1328, 1512, 1696
Hpy166II	GTNNAC	2 cut(s)	195, 1598
Hpy188I	TCNGA	9 cut(s)	120, 463, 547, 702, 820, 872, 1003, 1231, 1480
Hpy8I	GTNNAC	2 cut(s)	195, 1598
Hpy99I	CGWCG	1 cut(s)	997
HpyAV	CCTTC	2 cut(s)	1593, 2016
HpyCH4III	ACNGT	5 cut(s)	22, 192, 324, 1007, 1329
HpyCH4IV	ACGT	1 cut(s)	995
HpyF3I	CTNAG	3 cut(s)	810, 819, 1750
HpySE526I	ACGT	1 cut(s)	995
Hsp92II	CATG	6 cut(s)	30, 95, 892, 956, 1070, 1820
HspAI	GCGC	2 cut(s)	946, 1274
KflI	GGGWCCC	1 cut(s)	1649
KpnI	GGTACC	1 cut(s)	582
Ksp22I	TGATCA	1 cut(s)	933
LguI	GCTCTTC	2 cut(s)	1035, 1678
LmnI	GCTCC	5 cut(s)	210, 344, 851, 1399, 1974
Lsp1109I	GCAGC	9 cut(s)	485, 526, 604, 607, 697, 699, 1268, 1316, 1702
LweI	GCATC	8 cut(s)	66, 292, 582, 813, 835, 1196, 1261, 1381
MaeI	CTAG	8 cut(s)	236, 596, 644, 660, 855, 1170, 1373, 1425
MaeII	ACGT	1 cut(s)	995
MaeIII	GTNAC	4 cut(s)	247, 382, 1439, 1702
MflI	RGATCY	5 cut(s)	270, 1020, 1673, 1760, 1775
MhlI	GDGCHC	2 cut(s)	922, 1971
MluCI	AATT	7 cut(s)	261, 532, 773, 1224, 1367, 1576, 1864
MluI	ACGCGT	1 cut(s)	1792
MlyI	GAGTC	2 cut(s)	985, 1742
MmeI	TCCRAC	1 cut(s)	322
Mph1103I	ATGCAT	1 cut(s)	828
MseI	TTAA	6 cut(s)	60, 1047, 1362, 1862, 1868, 1943
MslI	CAYNNNNRTG	4 cut(s)	31, 728, 957, 1999
MspA1I	CMGCKG	4 cut(s)	690, 1211, 1259, 1874
MspCI	CTTAAG	1 cut(s)	1046
MspI	CCGG	4 cut(s)	291, 1377, 1509, 1604
MspR9I	CCNGG	7 cut(s)	291, 292, 417, 479, 576, 848, 1510
MssI	GTTTAAAC	1 cut(s)	1944
Mva1269I	GAATGC	2 cut(s)	111, 677
MvaI	CCWGG	4 cut(s)	417, 479, 576, 848
MvnI	CGCG	3 cut(s)	1026, 1499, 1794
NciI	CCSGG	3 cut(s)	291, 292, 1510
NlaIII	CATG	6 cut(s)	30, 95, 892, 956, 1070, 1820
NlaIV	GGNNCC	8 cut(s)	206, 515, 580, 1022, 1134, 1650, 1651, 1777
NmuCI	GTSAC	2 cut(s)	247, 1702
NsbI	TGCGCA	1 cut(s)	947
NsiI	ATGCAT	1 cut(s)	828
NspI	RCATGY	1 cut(s)	30
PaeI	GCATGC	1 cut(s)	30
PagI	TCATGA	1 cut(s)	91
PaqCI	CACCTGC	1 cut(s)	1715
PceI	AGGCCT	1 cut(s)	867
PciSI	GCTCTTC	2 cut(s)	1035, 1678
PctI	GAATGC	2 cut(s)	111, 677
PfeI	GAWTC	4 cut(s)	560, 1244, 1526, 1744
PflMI	CCANNNNNTGG	2 cut(s)	416, 1978
PfoI	TCCNGGA	1 cut(s)	1508
PkrI	GCNGC	9 cut(s)	475, 541, 619, 622, 689, 712, 1258, 1306, 1717
PleI	GAGTC	2 cut(s)	984, 1741
PmeI	GTTTAAAC	1 cut(s)	1944
PpsI	GAGTC	2 cut(s)	984, 1741
PpuMI	RGGWCCY	1 cut(s)	1649
Psp5II	RGGWCCY	1 cut(s)	1649
Psp6I	CCWGG	4 cut(s)	415, 477, 574, 846
PspEI	GGTNACC	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	690
PspGI	CCWGG	4 cut(s)	415, 477, 574, 846
PspN4I	GGNNCC	8 cut(s)	206, 515, 580, 1022, 1134, 1650, 1651, 1777
PspPI	GGNCC	5 cut(s)	350, 430, 1133, 1325, 1649
PspPPI	RGGWCCY	1 cut(s)	1649
PstNI	CAGNNNCTG	1 cut(s)	1259
PsuI	RGATCY	5 cut(s)	270, 1020, 1673, 1760, 1775
PvuII	CAGCTG	4 cut(s)	690, 1211, 1259, 1874
RsaI	GTAC	5 cut(s)	312, 498, 580, 1898, 1927
RsaNI	GTAC	5 cut(s)	311, 497, 579, 1897, 1926
RseI	CAYNNNNRTG	4 cut(s)	31, 728, 957, 1999
Rsr2I	CGGWCCG	1 cut(s)	1325
RsrII	CGGWCCG	1 cut(s)	1325
SapI	GCTCTTC	2 cut(s)	1035, 1678
SaqAI	TTAA	6 cut(s)	60, 1047, 1362, 1862, 1868, 1943
SatI	GCNGC	9 cut(s)	474, 540, 618, 621, 688, 711, 1257, 1305, 1716
Sau96I	GGNCC	5 cut(s)	350, 430, 1133, 1325, 1649
SchI	GAGTC	2 cut(s)	985, 1742
ScrFI	CCNGG	7 cut(s)	291, 292, 417, 479, 576, 848, 1510
SduI	GDGCHC	2 cut(s)	922, 1971
SfaNI	GCATC	8 cut(s)	66, 292, 582, 813, 835, 1196, 1261, 1381
SfcI	CTRYAG	3 cut(s)	665, 786, 1260
SinI	GGWCC	3 cut(s)	350, 1325, 1649
SmaI	CCCGGG	1 cut(s)	292
SmiMI	CAYNNNNRTG	4 cut(s)	31, 728, 957, 1999
SmlI	CTYRAG	2 cut(s)	714, 1046
SmoI	CTYRAG	2 cut(s)	714, 1046
SphI	GCATGC	1 cut(s)	30
Sse9I	AATT	7 cut(s)	261, 532, 773, 1224, 1367, 1576, 1864
SseBI	AGGCCT	1 cut(s)	867
SsiI	CCGC	6 cut(s)	380, 582, 631, 798, 1024, 1692
SspI	AATATT	2 cut(s)	1180, 1951
SspMI	CTAG	8 cut(s)	236, 596, 644, 660, 855, 1170, 1373, 1425
StuI	AGGCCT	1 cut(s)	867
StyD4I	CCNGG	7 cut(s)	289, 290, 415, 477, 574, 846, 1508
StyI	CCWWGG	2 cut(s)	517, 1312
TaaI	ACNGT	5 cut(s)	22, 192, 324, 1007, 1329
TaiI	ACGT	1 cut(s)	998
TaqI	TCGA	6 cut(s)	46, 300, 396, 1155, 1542, 1893
TaqII	GACCGA	1 cut(s)	1528
TasI	AATT	7 cut(s)	261, 532, 773, 1224, 1367, 1576, 1864
TatI	WGTACW	3 cut(s)	310, 496, 1925
TfiI	GAWTC	4 cut(s)	560, 1244, 1526, 1744
Tru1I	TTAA	6 cut(s)	60, 1047, 1362, 1862, 1868, 1943
Tru9I	TTAA	6 cut(s)	60, 1047, 1362, 1862, 1868, 1943
TscAI	CASTG	4 cut(s)	373, 688, 1666, 1846
TseFI	GTSAC	2 cut(s)	247, 1702
TseI	GCWGC	9 cut(s)	473, 539, 617, 620, 687, 710, 1256, 1304, 1715
Tsp45I	GTSAC	2 cut(s)	247, 1702
TspDTI	ATGAA	9 cut(s)	108, 921, 1053, 1074, 1083, 1257, 1380, 1589, 1983
TspGWI	ACGGA	1 cut(s)	1338
TspMI	CCCGGG	1 cut(s)	290
TspRI	CASTG	4 cut(s)	373, 688, 1666, 1846
Van91I	CCANNNNNTGG	2 cut(s)	416, 1978
Vha464I	CTTAAG	1 cut(s)	1046
VpaK11BI	GGWCC	3 cut(s)	350, 1325, 1649
XapI	RAATTY	3 cut(s)	1224, 1367, 1864
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	30
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
XmaI	CCCGGG	1 cut(s)	290
XspI	CTAG	8 cut(s)	236, 596, 644, 660, 855, 1170, 1373, 1425
Zsp2I	ATGCAT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.