Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005805

Physical Location & Seq

Genomic Coordinates Forward (+)

25926681 .. 25927563

Gene Structure 883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1179900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTTAGGCTTGGGACGAAACGGAACTATGAGTGCCTGCAAAACCCTAGTCCGTACATCTTTCTCCTCAATCACCTCCACCCTCCGAACCAATCGACCCGCCGTCTCTCTCCTCCACTCCATCTCCCTCATTTTCTCTCCGCTTCCTTCCAACCAAGCGCTCAGGCTTGCTCCGTACAATGTTCCTTCGCGGCCGTACGCTTCAATTTCATCTGAAGCAGTTGCTGCAAATTTAACAGATGAAGCTCACTCTGCAGACTTAACCCTAGAACCGCTGGAGAACATGACTCAGGAAACCGTGGGGGAGCTTCTGAGGAAGAAAAAAAAGGTTGCATGCCTGATGAAAATAGAACGTCGCCATGAGTCTGCGCACCAAATCGGCAGTCGGTGGTTCTTGTATCTGGACAAGTTCAGCTACAGTAAAGGTGCTTTTCTCAACAACGGTGAGGTGCTTGAAGCGGTGGATCCATACATAATGGATGTGAGGAAGGATAAGTTTAGGAAAGTGGTGAAGAATCGGAGCTACGAGGTGTGTCTGGTGGTTGAAGGATTGGGATATTTCGGCAATGTATCAGCGGCGTTTAGGTCTGCAGATGCGCTTGGGTTTCAGGTGGTTCATGTGGTATCATGCGACTCTAAAAGGTGCAACGGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002128 GO:0002938 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008757 GO:0009020 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0106050 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

219

Amino Acids

24.12

Weight (kDa)

9.33

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15390 AT5G15390
fragaria_vesca	FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560
malus_domestica	MD07G1179900.v1.1 MD11G1144500.v1.1 MD17G1055800.v1.1
prunus_persica	Prupe.3G259900_v2.0.a1
pyrus_communis	pycom17g05470
rosa_chinensis	RchiOBHm_Chr2g0166661
rosa_laevigata	RLG00000021639
rosa_multiflora	Rmu_co8387427.1_g000001 Rmu_sc0005279.1_g000001 Rmu_sc0016352.1_g000001 Rmu_sc0032184.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084320 Rroxscaffold_2G00084630
rosa_rugosa	Rorug02G0524700 Rorug02G0524800
rosa_samantha	Rh2AG591100 Rh2BG602900 Rh2CG573800 Rh2DG613700 Rh4DG034600
rosa_wichuraiana	Rw2G049230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	369
AccII	CGCG	1 cut(s)	190
AciI	CCGC	6 cut(s)	99, 140, 190, 272, 458, 575
AclWI	GGATC	2 cut(s)	458, 471
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	3 cut(s)	55, 176, 197
AfeI	AGCGCT	1 cut(s)	159
AgsI	TTSAA	3 cut(s)	204, 455, 545
AhdI	GACNNNNNGTC	1 cut(s)	101
AluBI	AGCT	4 cut(s)	245, 307, 414, 522
AluI	AGCT	4 cut(s)	245, 307, 414, 522
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	2 cut(s)	458, 471
AlwNI	CAGNNNCTG	1 cut(s)	224
Aor51HI	AGCGCT	1 cut(s)	159
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	229
ArsI	GACNNNNNNTTYG	4 cut(s)	33, 65, 367, 399
AspLEI	GCGC	3 cut(s)	160, 370, 598
AsuHPI	GGTGA	3 cut(s)	64, 455, 520
BamHI	GGATCC	1 cut(s)	463
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	2 cut(s)	86, 178
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	2 cut(s)	47, 266
BfmI	CTRYAG	3 cut(s)	252, 415, 588
BfoI	RGCGCY	1 cut(s)	161
BisI	GCNGC	3 cut(s)	191, 225, 576
BlsI	GCNGC	3 cut(s)	192, 226, 577
BmeRI	GACNNNNNGTC	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	465
BmsI	GCATC	1 cut(s)	583
BpmI	CTGGAG	1 cut(s)	296
Bpu10I	CCTNAGC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse3DI	GCAATG	1 cut(s)	571
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	484
BseMI	GCAATG	1 cut(s)	571
BseMII	CTCAG	3 cut(s)	175, 302, 302
BseRI	GAGGAG	2 cut(s)	55, 101
BseX3I	CGGCCG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	190
Bsh1285I	CGRYCG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	193
BsiEI	CGRYCG	1 cut(s)	194
BsiWI	CGTACG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	109
BsmBI	CGTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	463
BspACI	CCGC	6 cut(s)	99, 140, 190, 272, 458, 575
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	3 cut(s)	174, 301, 303
BspFNI	CGCG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	465
BspMAI	CTGCAG	2 cut(s)	256, 592
BspPI	GGATC	2 cut(s)	458, 471
BsrDI	GCAATG	1 cut(s)	571
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	463
Bst4CI	ACNGT	3 cut(s)	298, 419, 443
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	3 cut(s)	37, 168, 334
BstDEI	CTNAG	3 cut(s)	161, 288, 311
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	1 cut(s)	190
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	3 cut(s)	160, 370, 598
BstKTI	GATC	1 cut(s)	466
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	463
BstMCI	CGRYCG	1 cut(s)	194
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 251
BstNSI	RCATGY	1 cut(s)	336
BstSFI	CTRYAG	3 cut(s)	252, 415, 588
BstUI	CGCG	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
BstZI	CGGCCG	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	193
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	484
Cac8I	GCNNGC	3 cut(s)	37, 168, 334
CaiI	CAGNNNCTG	1 cut(s)	224
CfoI	GCGC	3 cut(s)	160, 370, 598
Csp6I	GTAC	3 cut(s)	54, 175, 196
CviAII	CATG	5 cut(s)	283, 333, 359, 617, 627
CviJI	RGCY	7 cut(s)	9, 166, 193, 245, 307, 414, 522
CviKI_1	RGCY	7 cut(s)	9, 166, 193, 245, 307, 414, 522
CviQI	GTAC	3 cut(s)	54, 175, 196
DdeI	CTNAG	3 cut(s)	161, 288, 311
DpnI	GATC	1 cut(s)	465
DpnII	GATC	1 cut(s)	463
DriI	GACNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	191
EagI	CGGCCG	1 cut(s)	191
Eam1105I	GACNNNNNGTC	1 cut(s)	101
EclXI	CGGCCG	1 cut(s)	191
Eco47III	AGCGCT	1 cut(s)	159
Eco52I	CGGCCG	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	5 cut(s)	286, 336, 362, 620, 630
FaiI	YATR	8 cut(s)	29, 284, 334, 360, 469, 473, 618, 628
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	5 cut(s)	282, 332, 358, 616, 626
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	3 cut(s)	191, 225, 576
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	3 cut(s)	191, 225, 576
FspBI	CTAG	2 cut(s)	47, 266
FspI	TGCGCA	1 cut(s)	369
GlaI	GCGC	3 cut(s)	159, 369, 597
GluI	GCNGC	3 cut(s)	191, 225, 576
GsuI	CTGGAG	1 cut(s)	296
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	193
HhaI	GCGC	3 cut(s)	160, 370, 598
Hin1II	CATG	5 cut(s)	286, 336, 362, 620, 630
Hin6I	GCGC	3 cut(s)	158, 368, 596
HinP1I	GCGC	3 cut(s)	158, 368, 596
HinfI	GANTC	4 cut(s)	286, 362, 514, 632
HphI	GGTGA	3 cut(s)	64, 455, 520
Hpy188I	TCNGA	4 cut(s)	86, 214, 312, 519
Hpy188III	TCNNGA	2 cut(s)	290, 401
Hpy99I	CGWCG	1 cut(s)	357
HpyAV	CCTTC	4 cut(s)	156, 195, 481, 539
HpyCH4III	ACNGT	3 cut(s)	298, 419, 443
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	6 cut(s)	39, 227, 254, 332, 590, 645
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 251
HpyF3I	CTNAG	3 cut(s)	161, 288, 311
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	5 cut(s)	286, 336, 362, 620, 630
HspAI	GCGC	3 cut(s)	158, 368, 596
Kzo9I	GATC	1 cut(s)	463
LmnI	GCTCC	3 cut(s)	175, 304, 519
LpnPI	CCDG	8 cut(s)	49, 148, 260, 275, 350, 386, 521, 593
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	2 cut(s)	47, 266
MaeII	ACGT	1 cut(s)	352
MalI	GATC	1 cut(s)	465
MboI	GATC	1 cut(s)	463
MboII	GAAGA	2 cut(s)	328, 523
MflI	RGATCY	1 cut(s)	463
MluCI	AATT	2 cut(s)	204, 229
MlyI	GAGTC	3 cut(s)	280, 371, 626
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	9 cut(s)	76, 85, 92, 122, 137, 306, 439, 477, 520
MseI	TTAA	2 cut(s)	233, 260
MspA1I	CMGCKG	2 cut(s)	274, 575
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	2 cut(s)	224, 251
NdeII	GATC	1 cut(s)	463
NlaIII	CATG	5 cut(s)	286, 336, 362, 620, 630
NlaIV	GGNNCC	1 cut(s)	465
NsbI	TGCGCA	1 cut(s)	369
NspI	RCATGY	1 cut(s)	336
PaeI	GCATGC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	514
Pfl23II	CGTACG	1 cut(s)	195
PkrI	GCNGC	3 cut(s)	192, 226, 577
PleI	GAGTC	3 cut(s)	280, 370, 626
PpsI	GAGTC	3 cut(s)	280, 370, 626
PspLI	CGTACG	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	465
PstI	CTGCAG	2 cut(s)	256, 592
PstNI	CAGNNNCTG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	463
RsaI	GTAC	3 cut(s)	55, 176, 197
RsaNI	GTAC	3 cut(s)	54, 175, 196
SaqAI	TTAA	2 cut(s)	233, 260
SatI	GCNGC	3 cut(s)	191, 225, 576
Sau3AI	GATC	1 cut(s)	463
SchI	GAGTC	3 cut(s)	280, 371, 626
SfaNI	GCATC	1 cut(s)	583
SfcI	CTRYAG	3 cut(s)	252, 415, 588
SphI	GCATGC	1 cut(s)	336
Sse9I	AATT	2 cut(s)	204, 229
SsiI	CCGC	6 cut(s)	99, 140, 190, 272, 458, 575
SspMI	CTAG	2 cut(s)	47, 266
TaaI	ACNGT	3 cut(s)	298, 419, 443
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	1 cut(s)	94
TasI	AATT	2 cut(s)	204, 229
TauI	GCSGC	2 cut(s)	193, 578
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	2 cut(s)	233, 260
Tru9I	TTAA	2 cut(s)	233, 260
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	4 cut(s)	198, 255, 356, 605
TspGWI	ACGGA	3 cut(s)	36, 41, 162
XapI	RAATTY	1 cut(s)	229
XceI	RCATGY	1 cut(s)	336
XspI	CTAG	2 cut(s)	47, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.