Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005805

Physical Location & Seq

Genomic Coordinates Forward (+)

65514090 .. 65514809

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0524800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTTCTTCTCCAAATCAATCCCTCTGTCTTTCTTGCTCTTCTGTCTTTTGCACCATGCAGCCTCAGGTGCTTCCCCACTTTATCATATCTGTTTCAGCAAGGCAAACTACACTGGCAGTAGTCCATACCATGCTAACTTGAACACGATGCTCAATCATTTATCCACCAAAGTCCCTCCAACTGGATTCGGGGTTGCTTCAAGTGGTCTAGGTCCGAACAAAGTAAACGGACTAGCGCTATGCCGAGGCGATGTCTCAAACCCAAAGTGTAAGACTTGTGTCATTGAAGCAAGCAAAGAGCTTCGTGCACGCTGCCCTCATAAAAAAGGAGCCATAATATGGTACGACCATTGCATGCTGAAATACTCAAATGGCAACTTCTTTGGGCAAATTGATAGCACAAACAAGTTCTATATGTGGAACACCAAGACCGTAAGCAATCCCAAACCATTCAATAAGAATGTTAAGAAATTGTTGAGTGGGTTATCTGATAAAGCTTCTTCTAACCGAAAGCTTTATAGTACTGGTGAGCTACAGCTCGATAAATCGAAAAAGTTGTATGGGTTAGTTCAGTGCACGAGGGACCTATCTCGCCTGGAATGTAAGAAGTGTCTTGATGTTGCAATAAGTGAACTGCAGAAAGGTTCTGATGCCAAACGAGGCGGGCGCGTAGCAGGCGGGAGTTGTAACTTTCGATATGAACTTTCCCGCTTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002128 GO:0002938 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008757 GO:0009020 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0106050 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

239

Amino Acids

26.39

Weight (kDa)

9.67

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	31 - 124	7.6e-25	Salt stress response/antifungal
Stress-antifung	PF01657	144 - 235	1.8e-14	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15390 AT5G15390
fragaria_vesca	FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560
malus_domestica	MD07G1179900.v1.1 MD11G1144500.v1.1 MD17G1055800.v1.1
prunus_persica	Prupe.3G259900_v2.0.a1
pyrus_communis	pycom17g05470
rosa_chinensis	RchiOBHm_Chr2g0166661
rosa_laevigata	RLG00000021639
rosa_multiflora	Rmu_co8387427.1_g000001 Rmu_sc0005279.1_g000001 Rmu_sc0016352.1_g000001 Rmu_sc0032184.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084320 Rroxscaffold_2G00084630
rosa_rugosa	Rorug02G0524700 Rorug02G0524800
rosa_samantha	Rh2AG591100 Rh2BG602900 Rh2CG573800 Rh2DG613700 Rh4DG034600
rosa_wichuraiana	Rw2G049230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccII	CGCG	1 cut(s)	669
AciI	CCGC	3 cut(s)	663, 678, 709
AfaI	GTAC	2 cut(s)	344, 523
AfeI	AGCGCT	1 cut(s)	237
AfiI	CCNNNNNNNGG	2 cut(s)	182, 339
AgsI	TTSAA	4 cut(s)	142, 201, 287, 454
AjnI	CCWGG	1 cut(s)	594
AluBI	AGCT	5 cut(s)	301, 497, 514, 532, 538
AluI	AGCT	5 cut(s)	301, 497, 514, 532, 538
Alw21I	GWGCWC	2 cut(s)	310, 578
Alw26I	GTCTC	1 cut(s)	259
Alw44I	GTGCAC	2 cut(s)	306, 574
Aor51HI	AGCGCT	1 cut(s)	237
ApaLI	GTGCAC	2 cut(s)	306, 574
ApeKI	GCWGC	2 cut(s)	59, 312
AspLEI	GCGC	2 cut(s)	238, 669
AspS9I	GGNCC	2 cut(s)	212, 583
AsuHPI	GGTGA	1 cut(s)	539
AvaII	GGWCC	2 cut(s)	212, 583
AxyI	CCTNAGG	1 cut(s)	64
BaeGI	GKGCMC	2 cut(s)	310, 578
BauI	CACGAG	1 cut(s)	577
Bbv12I	GWGCWC	2 cut(s)	310, 578
BbvI	GCAGC	2 cut(s)	71, 299
BciT130I	CCWGG	1 cut(s)	596
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	2 cut(s)	209, 233
BfmI	CTRYAG	2 cut(s)	533, 635
BfoI	RGCGCY	1 cut(s)	239
BisI	GCNGC	2 cut(s)	60, 313
BlsI	GCNGC	2 cut(s)	61, 314
BmcAI	AGTACT	1 cut(s)	523
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	2 cut(s)	212, 583
BmgT120I	GGNCC	2 cut(s)	212, 583
BmiI	GGNNCC	2 cut(s)	331, 584
BmrFI	CCNGG	1 cut(s)	596
BmsI	GCATC	2 cut(s)	138, 640
BoxI	GACNNNNGTC	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 339
Bse1I	ACTGG	3 cut(s)	118, 187, 529
Bse21I	CCTNAGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	1 cut(s)	244
BseLI	CCNNNNNNNGG	2 cut(s)	182, 339
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	3 cut(s)	118, 187, 529
BseSI	GKGCMC	2 cut(s)	310, 578
BseXI	GCAGC	2 cut(s)	71, 299
Bsh1236I	CGCG	1 cut(s)	669
BsiHKAI	GWGCWC	2 cut(s)	310, 578
BslFI	GGGAC	2 cut(s)	158, 596
BslI	CCNNNNNNNGG	2 cut(s)	182, 339
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	2 cut(s)	158, 596
Bsp1286I	GDGCHC	2 cut(s)	310, 578
BspACI	CCGC	3 cut(s)	663, 678, 709
BspCNI	CTCAG	1 cut(s)	77
BspFNI	CGCG	1 cut(s)	669
BspLI	GGNNCC	2 cut(s)	331, 584
BspMAI	CTGCAG	1 cut(s)	639
BspQI	GCTCTTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	3 cut(s)	118, 187, 529
BssECI	CCNNGG	1 cut(s)	244
BssSI	CACGAG	1 cut(s)	577
Bst2BI	CACGAG	1 cut(s)	577
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	5 cut(s)	292, 310, 356, 665, 676
BstDEI	CTNAG	1 cut(s)	64
BstFNI	CGCG	1 cut(s)	669
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	2 cut(s)	238, 669
BstMAI	GTCTC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 675
BstNI	CCWGG	1 cut(s)	596
BstNSI	RCATGY	1 cut(s)	358
BstPAI	GACNNNNGTC	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	594
BstSFI	CTRYAG	2 cut(s)	533, 635
BstSLI	GKGCMC	2 cut(s)	310, 578
BstUI	CGCG	1 cut(s)	669
BstV1I	GCAGC	2 cut(s)	71, 299
Bsu36I	CCTNAGG	1 cut(s)	64
BtgZI	GCGATG	1 cut(s)	264
BtsIMutI	CAGTG	2 cut(s)	111, 578
Cac8I	GCNNGC	5 cut(s)	292, 310, 356, 665, 676
CfoI	GCGC	2 cut(s)	238, 669
Cfr13I	GGNCC	2 cut(s)	212, 583
Csp6I	GTAC	2 cut(s)	343, 522
CviAII	CATG	3 cut(s)	56, 131, 355
CviJI	RGCY	7 cut(s)	62, 301, 332, 497, 514, 532, 538
CviKI_1	RGCY	7 cut(s)	62, 301, 332, 497, 514, 532, 538
CviQI	GTAC	2 cut(s)	343, 522
DdeI	CTNAG	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco47I	GGWCC	2 cut(s)	212, 583
Eco47III	AGCGCT	1 cut(s)	237
Eco81I	CCTNAGG	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	594
FaeI	CATG	3 cut(s)	59, 134, 358
FaqI	GGGAC	2 cut(s)	158, 596
FatI	CATG	3 cut(s)	55, 130, 354
FauI	CCCGC	3 cut(s)	656, 671, 716
Fnu4HI	GCNGC	2 cut(s)	60, 313
Fsp4HI	GCNGC	2 cut(s)	60, 313
FspBI	CTAG	2 cut(s)	209, 233
GlaI	GCGC	2 cut(s)	237, 668
GluI	GCNGC	2 cut(s)	60, 313
HaeII	RGCGCY	1 cut(s)	239
HhaI	GCGC	2 cut(s)	238, 669
Hin1II	CATG	3 cut(s)	59, 134, 358
Hin6I	GCGC	2 cut(s)	236, 667
HinP1I	GCGC	2 cut(s)	236, 667
HindIII	AAGCTT	2 cut(s)	495, 512
HinfI	GANTC	1 cut(s)	186
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	4 cut(s)	226, 308, 576, 632
Hpy188I	TCNGA	3 cut(s)	216, 490, 649
Hpy188III	TCNNGA	1 cut(s)	614
Hpy8I	GTNNAC	4 cut(s)	226, 308, 576, 632
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4V	TGCA	7 cut(s)	52, 59, 308, 354, 576, 623, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 675
HpyF3I	CTNAG	1 cut(s)	64
Hsp92II	CATG	3 cut(s)	59, 134, 358
HspAI	GCGC	2 cut(s)	236, 667
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	7 cut(s)	51, 99, 168, 510, 581, 608, 660
Lsp1109I	GCAGC	2 cut(s)	71, 299
LweI	GCATC	2 cut(s)	138, 640
MaeI	CTAG	2 cut(s)	209, 233
MaeIII	GTNAC	1 cut(s)	686
MboII	GAAGA	2 cut(s)	31, 492
MhlI	GDGCHC	2 cut(s)	310, 578
MluCI	AATT	2 cut(s)	390, 470
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	7 cut(s)	33, 73, 186, 239, 327, 573, 653
MseI	TTAA	1 cut(s)	465
MspR9I	CCNGG	1 cut(s)	596
MvaI	CCWGG	1 cut(s)	596
MvnI	CGCG	1 cut(s)	669
MwoI	GCNNNNNNNGC	2 cut(s)	68, 675
NlaIII	CATG	3 cut(s)	59, 134, 358
NlaIV	GGNNCC	2 cut(s)	331, 584
NmeAIII	GCCGAG	1 cut(s)	269
NspI	RCATGY	1 cut(s)	358
PaeI	GCATGC	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	186
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	61, 314
PpuMI	RGGWCCY	1 cut(s)	583
PshAI	GACNNNNGTC	1 cut(s)	278
Psp5II	RGGWCCY	1 cut(s)	583
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	2 cut(s)	331, 584
PspPI	GGNCC	2 cut(s)	212, 583
PspPPI	RGGWCCY	1 cut(s)	583
PstI	CTGCAG	1 cut(s)	639
RsaI	GTAC	2 cut(s)	344, 523
RsaNI	GTAC	2 cut(s)	343, 522
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	2 cut(s)	60, 313
Sau96I	GGNCC	2 cut(s)	212, 583
ScaI	AGTACT	1 cut(s)	523
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	2 cut(s)	310, 578
SetI	ASST	9 cut(s)	70, 214, 303, 499, 516, 534, 540, 588, 646
SfaNI	GCATC	2 cut(s)	138, 640
SfcI	CTRYAG	2 cut(s)	533, 635
SinI	GGWCC	2 cut(s)	212, 583
SphI	GCATGC	1 cut(s)	358
Sse9I	AATT	2 cut(s)	390, 470
SsiI	CCGC	3 cut(s)	663, 678, 709
SspMI	CTAG	2 cut(s)	209, 233
StyD4I	CCNGG	1 cut(s)	594
TaaI	ACNGT	1 cut(s)	433
TaqI	TCGA	3 cut(s)	540, 548, 694
TasI	AATT	2 cut(s)	390, 470
TatI	WGTACW	1 cut(s)	521
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	2 cut(s)	118, 578
TseI	GCWGC	2 cut(s)	59, 312
TspDTI	ATGAA	1 cut(s)	714
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	2 cut(s)	118, 578
Van91I	CCANNNNNTGG	1 cut(s)	339
VneI	GTGCAC	2 cut(s)	306, 574
VpaK11BI	GGWCC	2 cut(s)	212, 583
XceI	RCATGY	1 cut(s)	358
XspI	CTAG	2 cut(s)	209, 233
ZrmI	AGTACT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.