Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005805

Physical Location & Seq

Genomic Coordinates Reverse (-)

82206899 .. 82209863

Gene Structure 2965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG591100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGGAACAAGGCTCAGAGTTTCCAATGTCACTTCTCGGCCGTACGCTTCAATTGCAGCAGCAGAAGCCGCGGACTTCACAGACGAAGCTGCTCCGTCGCCAACCGAAACCCTAGATCCATCCGAGTCACAAGACACCGTGGAGCACCTCCTCACGCACCGAGACGACGTCGTGAAGTTTATGAAAATGGAACGCCGCCCTTTACGGTCCCCACTCGGAGGCGATAGGTGGTTCCCGTACCTCGACAGATTCAACTGCGGCGGTGCTTACCTCAGCAGCGGTGAGATACTGGAAGCGGTTGATCCGTACATTATGGATGTGAGGAAGGTGAGGTTTAGGAATGTGGTGAGGAATCGGAGCTACTCGGTGTGCTTGGTGGTGGAGGGATTGGGAGATTTCGGAAATGTATCGGCGGTTTTCCGGTCCGCCGACGCGCTCGGGATTCAGTCGGTTCATGTGCTCTCTTGTGACGCATCCAAAAGGTACAGAGAAAATCGCCATGTCAGCATGGGAGCAGAGAAATGGTTGGATATTGAACTTTGGGACTCCACTCAAGAGTGCTTTGAGGTTCTAACATCGCGTGGTTATCGAATTGCAACAACACATGTGGGGATGGATGCGGTGTCTATTTACAACATGGACTGGTCCTGCCCAACTGCAATAGTAGTCGGAAATGAAAATAGGGGAATAAGTGATGAGGCCCTGGATTTGTCAGATTTGCATTGCAGTATTCCAATGAAGGGCATGGTGGATTCTTTCAATGTTTCAGTTGCTGCAGGCATTCTCATGCACCATGCTGTTTGTGATAGAACTTCTCGCCTGGGCTGTCATGGTGATCTGACATTTGAAGAGAACCAAATTCTTCTTGCTGAGTTTTCTCTGCGTCATAGCAAGAATTCAATTAGCATTGCTCGTGAGTATGCAAAGCGGAAGGCAGCTCTGCCCACACCAAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002128 GO:0002938 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008757 GO:0009020 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0106050 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

319

Amino Acids

35.54

Weight (kDa)

5.83

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SpoU_methylase	PF00588	123 - 264	1.2e-35	SpoU rRNA Methylase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15390 AT5G15390
fragaria_vesca	FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560
malus_domestica	MD07G1179900.v1.1 MD11G1144500.v1.1 MD17G1055800.v1.1
prunus_persica	Prupe.3G259900_v2.0.a1
pyrus_communis	pycom17g05470
rosa_chinensis	RchiOBHm_Chr2g0166661
rosa_laevigata	RLG00000021639
rosa_multiflora	Rmu_co8387427.1_g000001 Rmu_sc0005279.1_g000001 Rmu_sc0016352.1_g000001 Rmu_sc0032184.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084320 Rroxscaffold_2G00084630
rosa_rugosa	Rorug02G0524700 Rorug02G0524800
rosa_samantha	Rh2AG591100 Rh2BG602900 Rh2CG573800 Rh2DG613700 Rh4DG034600
rosa_wichuraiana	Rw2G049230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	171
AccII	CGCG	3 cut(s)	71, 434, 580
AclWI	GGATC	2 cut(s)	110, 296
AcoI	YGGCCR	1 cut(s)	38
AcsI	RAATTY	2 cut(s)	858, 895
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	4 cut(s)	44, 239, 308, 485
AfiI	CCNNNNNNNGG	3 cut(s)	218, 740, 951
AflIII	ACRYGT	1 cut(s)	604
AgsI	TTSAA	6 cut(s)	51, 253, 536, 760, 848, 900
AjnI	CCWGG	2 cut(s)	702, 819
AluBI	AGCT	3 cut(s)	89, 360, 938
AluI	AGCT	3 cut(s)	89, 360, 938
Alw21I	GWGCWC	2 cut(s)	147, 462
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	110, 296
AlwNI	CAGNNNCTG	1 cut(s)	773
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	2 cut(s)	38, 699
ApeKI	GCWGC	6 cut(s)	56, 59, 89, 276, 773, 935
ApoI	RAATTY	2 cut(s)	858, 895
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	4 cut(s)	207, 423, 645, 700
AsuHPI	GGTGA	4 cut(s)	293, 340, 358, 845
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	3 cut(s)	207, 423, 645
BauI	CACGAG	1 cut(s)	912
Bbv12I	GWGCWC	2 cut(s)	147, 462
BbvCI	CCTCAGC	1 cut(s)	272
BbvI	GCAGC	6 cut(s)	68, 71, 76, 288, 760, 947
BccI	CCATC	2 cut(s)	127, 607
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	2 cut(s)	704, 821
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	113
BfmI	CTRYAG	1 cut(s)	774
BisI	GCNGC	9 cut(s)	57, 60, 69, 90, 196, 259, 277, 774, 936
BlsI	GCNGC	9 cut(s)	58, 61, 70, 91, 197, 260, 278, 775, 937
Bme1390I	CCNGG	2 cut(s)	704, 821
Bme18I	GGWCC	3 cut(s)	207, 423, 645
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	4 cut(s)	207, 423, 645, 700
BmiI	GGNNCC	2 cut(s)	209, 233
BmrFI	CCNGG	2 cut(s)	704, 821
BmsI	GCATC	2 cut(s)	482, 607
Bpu10I	CCTNAGC	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	5 cut(s)	69, 138, 702, 820, 950
BsaWI	WCCGGW	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 740, 951
Bse1I	ACTGG	2 cut(s)	294, 647
Bse3DI	GCAATG	2 cut(s)	721, 906
BseBI	CCWGG	2 cut(s)	704, 821
BseDI	CCNNGG	5 cut(s)	69, 138, 702, 820, 950
BseGI	GGATG	5 cut(s)	119, 322, 473, 618, 622
BseLI	CCNNNNNNNGG	3 cut(s)	218, 740, 951
BseMI	GCAATG	2 cut(s)	721, 906
BseMII	CTCAG	3 cut(s)	28, 286, 861
BseNI	ACTGG	2 cut(s)	294, 647
BseRI	GAGGAG	1 cut(s)	140
BseX3I	CGGCCG	1 cut(s)	38
BseXI	GCAGC	6 cut(s)	68, 71, 76, 288, 760, 947
Bsh1236I	CGCG	3 cut(s)	71, 434, 580
Bsh1285I	CGRYCG	1 cut(s)	41
BshFI	GGCC	2 cut(s)	40, 701
BsiEI	CGRYCG	1 cut(s)	41
BsiHKAI	GWGCWC	2 cut(s)	147, 462
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	421
BsiWI	CGTACG	1 cut(s)	42
BslFI	GGGAC	2 cut(s)	193, 557
BslI	CCNNNNNNNGG	3 cut(s)	218, 740, 951
BsmAI	GTCTC	1 cut(s)	156
BsmBI	CGTCTC	1 cut(s)	156
BsmFI	GGGAC	2 cut(s)	193, 557
BsmI	GAATGC	1 cut(s)	780
BsnI	GGCC	2 cut(s)	40, 701
BsoBI	CYCGRG	1 cut(s)	437
Bsp1286I	GDGCHC	2 cut(s)	147, 462
Bsp143I	GATC	3 cut(s)	115, 301, 835
BspANI	GGCC	2 cut(s)	40, 701
BspCNI	CTCAG	3 cut(s)	27, 285, 862
BspFNI	CGCG	3 cut(s)	71, 434, 580
BspLI	GGNNCC	2 cut(s)	209, 233
BspMAI	CTGCAG	1 cut(s)	778
BspPI	GGATC	2 cut(s)	110, 296
BsrDI	GCAATG	2 cut(s)	721, 906
BsrI	ACTGG	2 cut(s)	294, 647
BssECI	CCNNGG	5 cut(s)	69, 138, 702, 820, 950
BssMI	GATC	3 cut(s)	115, 301, 835
BssNI	GRCGYC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	912
BssT1I	CCWWGG	1 cut(s)	950
Bst2BI	CACGAG	1 cut(s)	912
Bst2UI	CCWGG	2 cut(s)	704, 821
Bst4CI	ACNGT	2 cut(s)	139, 207
Bst6I	CTCTTC	1 cut(s)	843
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	778
BstDEI	CTNAG	3 cut(s)	14, 272, 870
BstDSI	CCRYGG	2 cut(s)	69, 138
BstF5I	GGATG	5 cut(s)	119, 322, 473, 618, 622
BstFNI	CGCG	3 cut(s)	71, 434, 580
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	3 cut(s)	118, 304, 838
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	3 cut(s)	115, 301, 835
BstMCI	CGRYCG	1 cut(s)	41
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 65, 68, 504
BstNI	CCWGG	2 cut(s)	704, 821
BstNSI	RCATGY	1 cut(s)	608
BstSCI	CCNGG	2 cut(s)	702, 819
BstSFI	CTRYAG	1 cut(s)	774
BstUI	CGCG	3 cut(s)	71, 434, 580
BstV1I	GCAGC	6 cut(s)	68, 71, 76, 288, 760, 947
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BstZI	CGGCCG	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	40, 701
BtgI	CCRYGG	2 cut(s)	69, 138
BtgZI	GCGATG	1 cut(s)	561
BtsCI	GGATG	5 cut(s)	119, 322, 473, 618, 622
Cac8I	GCNNGC	1 cut(s)	778
CaiI	CAGNNNCTG	1 cut(s)	773
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	4 cut(s)	207, 423, 645, 700
Cfr42I	CCGCGG	1 cut(s)	72
CpoI	CGGWCCG	1 cut(s)	423
CseI	GACGC	3 cut(s)	440, 479, 872
Csp6I	GTAC	4 cut(s)	43, 238, 307, 484
CspCI	CAANNNNNGTGG	2 cut(s)	588, 623
CspI	CGGWCCG	1 cut(s)	423
CviAII	CATG	9 cut(s)	455, 500, 508, 605, 637, 745, 787, 794, 830
CviJI	RGCY	9 cut(s)	13, 40, 68, 89, 360, 701, 825, 938, 955
CviKI_1	RGCY	9 cut(s)	13, 40, 68, 89, 360, 701, 825, 938, 955
CviQI	GTAC	4 cut(s)	43, 238, 307, 484
DdeI	CTNAG	3 cut(s)	14, 272, 870
DpnI	GATC	3 cut(s)	117, 303, 837
DpnII	GATC	3 cut(s)	115, 301, 835
EaeI	YGGCCR	1 cut(s)	38
EagI	CGGCCG	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	843
EarI	CTCTTC	1 cut(s)	843
EciI	GGCGGA	1 cut(s)	415
EclXI	CGGCCG	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	950
Eco47I	GGWCC	3 cut(s)	207, 423, 645
Eco52I	CGGCCG	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	700
EcoRI	GAATTC	1 cut(s)	895
EcoRII	CCWGG	2 cut(s)	702, 819
EcoT14I	CCWWGG	1 cut(s)	950
ErhI	CCWWGG	1 cut(s)	950
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	9 cut(s)	458, 503, 511, 608, 640, 748, 790, 797, 833
FaqI	GGGAC	2 cut(s)	193, 557
FatI	CATG	9 cut(s)	454, 499, 507, 604, 636, 744, 786, 793, 829
Fnu4HI	GCNGC	9 cut(s)	57, 60, 69, 90, 196, 259, 277, 774, 936
FokI	GGATG	5 cut(s)	106, 329, 460, 625, 629
Fsp4HI	GCNGC	9 cut(s)	57, 60, 69, 90, 196, 259, 277, 774, 936
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	9 cut(s)	57, 60, 69, 90, 196, 259, 277, 774, 936
HaeIII	GGCC	2 cut(s)	40, 701
HapII	CCGG	1 cut(s)	421
HgaI	GACGC	3 cut(s)	440, 479, 872
HhaI	GCGC	1 cut(s)	436
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	9 cut(s)	458, 503, 511, 608, 640, 748, 790, 797, 833
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HinfI	GANTC	6 cut(s)	125, 249, 352, 442, 545, 752
HpaII	CCGG	1 cut(s)	421
HphI	GGTGA	4 cut(s)	293, 340, 358, 845
Hpy188I	TCNGA	8 cut(s)	17, 124, 218, 357, 401, 671, 715, 840
Hpy188III	TCNNGA	4 cut(s)	172, 439, 554, 914
Hpy99I	CGWCG	4 cut(s)	100, 170, 173, 434
HpyAV	CCTTC	3 cut(s)	319, 733, 925
HpyCH4III	ACNGT	2 cut(s)	139, 207
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	8 cut(s)	56, 596, 659, 721, 726, 776, 790, 923
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 65, 68, 504
HpyF3I	CTNAG	3 cut(s)	14, 272, 870
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	9 cut(s)	458, 503, 511, 608, 640, 748, 790, 797, 833
HspAI	GCGC	1 cut(s)	434
KspI	CCGCGG	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	115, 301, 835
LmnI	GCTCC	4 cut(s)	97, 142, 357, 512
LpnPI	CCDG	9 cut(s)	275, 434, 628, 661, 689, 716, 762, 806, 833
Lsp1109I	GCAGC	6 cut(s)	68, 71, 76, 288, 760, 947
LweI	GCATC	2 cut(s)	482, 607
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	3 cut(s)	28, 126, 467
MalI	GATC	3 cut(s)	117, 303, 837
MboI	GATC	3 cut(s)	115, 301, 835
MboII	GAAGA	2 cut(s)	854, 860
MfeI	CAATTG	1 cut(s)	51
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	2 cut(s)	147, 462
MluCI	AATT	5 cut(s)	51, 591, 858, 895, 900
MlyI	GAGTC	2 cut(s)	134, 539
MmeI	TCCRAC	2 cut(s)	507, 649
MslI	CAYNNNNRTG	1 cut(s)	785
MspA1I	CMGCKG	2 cut(s)	71, 279
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	2 cut(s)	704, 821
MunI	CAATTG	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	780
MvaI	CCWGG	2 cut(s)	704, 821
MvnI	CGCG	3 cut(s)	71, 434, 580
MwoI	GCNNNNNNNGC	4 cut(s)	53, 65, 68, 504
NdeII	GATC	3 cut(s)	115, 301, 835
NlaIII	CATG	9 cut(s)	458, 503, 511, 608, 640, 748, 790, 797, 833
NlaIV	GGNNCC	2 cut(s)	209, 233
NmeAIII	GCCGAG	1 cut(s)	16
NmuCI	GTSAC	3 cut(s)	28, 126, 467
NspI	RCATGY	1 cut(s)	608
PciI	ACATGT	1 cut(s)	604
PctI	GAATGC	1 cut(s)	780
PfeI	GAWTC	4 cut(s)	249, 352, 442, 752
Pfl23II	CGTACG	1 cut(s)	42
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	9 cut(s)	58, 61, 70, 91, 197, 260, 278, 775, 937
PleI	GAGTC	2 cut(s)	133, 539
PpsI	GAGTC	2 cut(s)	133, 539
PscI	ACATGT	1 cut(s)	604
Psp6I	CCWGG	2 cut(s)	702, 819
PspGI	CCWGG	2 cut(s)	702, 819
PspLI	CGTACG	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	209, 233
PspPI	GGNCC	4 cut(s)	207, 423, 645, 700
PstI	CTGCAG	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	773
PsuI	RGATCY	1 cut(s)	115
PsyI	GACNNNGTC	1 cut(s)	167
RsaI	GTAC	4 cut(s)	44, 239, 308, 485
RsaNI	GTAC	4 cut(s)	43, 238, 307, 484
RseI	CAYNNNNRTG	1 cut(s)	785
Rsr2I	CGGWCCG	1 cut(s)	423
RsrII	CGGWCCG	1 cut(s)	423
SacII	CCGCGG	1 cut(s)	72
SatI	GCNGC	9 cut(s)	57, 60, 69, 90, 196, 259, 277, 774, 936
Sau3AI	GATC	3 cut(s)	115, 301, 835
Sau96I	GGNCC	4 cut(s)	207, 423, 645, 700
SchI	GAGTC	2 cut(s)	134, 539
ScrFI	CCNGG	2 cut(s)	704, 821
SduI	GDGCHC	2 cut(s)	147, 462
SfaNI	GCATC	2 cut(s)	482, 607
SfcI	CTRYAG	1 cut(s)	774
Sfr303I	CCGCGG	1 cut(s)	72
SgrBI	CCGCGG	1 cut(s)	72
SinI	GGWCC	3 cut(s)	207, 423, 645
SmiMI	CAYNNNNRTG	1 cut(s)	785
SmlI	CTYRAG	1 cut(s)	552
SmoI	CTYRAG	1 cut(s)	552
Sse9I	AATT	5 cut(s)	51, 591, 858, 895, 900
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	2 cut(s)	702, 819
StyI	CCWWGG	1 cut(s)	950
TaaI	ACNGT	2 cut(s)	139, 207
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	243, 589
TasI	AATT	5 cut(s)	51, 591, 858, 895, 900
TauI	GCSGC	3 cut(s)	71, 198, 261
TfiI	GAWTC	4 cut(s)	249, 352, 442, 752
TseFI	GTSAC	3 cut(s)	28, 126, 467
TseI	GCWGC	6 cut(s)	56, 59, 89, 276, 773, 935
Tsp45I	GTSAC	3 cut(s)	28, 126, 467
TspDTI	ATGAA	4 cut(s)	197, 443, 690, 752
TspGWI	ACGGA	2 cut(s)	84, 294
Tth111I	GACNNNGTC	1 cut(s)	167
VpaK11BI	GGWCC	3 cut(s)	207, 423, 645
XapI	RAATTY	2 cut(s)	858, 895
XceI	RCATGY	1 cut(s)	608
XspI	CTAG	1 cut(s)	113
ZraI	GACGTC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.