Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005805

Physical Location & Seq

Genomic Coordinates Reverse (-)

81302204 .. 81305289

Gene Structure 3086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53453

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCGACCTGCAAAACCCTAGTCCACGCTTCTCTCTCTTCAATCGGCTCCACTCTCCGACCCCAATTCATTCCTCTCCTCAATCTCCGCTTCTCCCCTCTCCTTTGCCACAACAAAGGGCTCAGAGTTTCCAATGTCACTTCTCGGCCGTACGCTTCAATTGCAGCAGCAGAAGCCGCGGACTTCACAGACGAAGCTGCTCCGTCGCCAAACGAAACCCTAGATCCATCCGAGTCACAGGACACCGTGGAGCACCTCCTCACGCACCGAGACGACGTCGTGAAGTTTATGAAAATGGAACGCCGCCCTTTACGGCCCCCACTCGGAGGCGATAGGTGGTTCCCGTACCTCGACAGATTCAACTGCGGCGGTGCTTACCTCAGCAGCGGTGAGATACTGGAAGCGGTTGATCCGTACATTATGGATGTGAGGAAGGAGAGGTTTAGGAATGTGGTGAGGAATCGGAGTTACTCGGTGTGCTTGGTGGTGGAGGGATTGGGAGATTTCGGAAATGTATCGGCGGTTTTCCGCTCCGCCGACGCGCTCGGGATTCAGTCGGTTCATGTGCTCTCTTGTGACGCATCCAAAAGGTACAGAGAAAATCGCCATGTCAGCATGGGAGCAGAGAAATGGTTGGATATTGAACTTTGGGACTCCACTCAAGAGTGCTTTGAGGTTCTAACATCGCGTGGTTATCGAATTGCAACAACACATGTGGGGATGGATGCGGTGTCTATTTACAACATGGACTGGTCCTGCCCAACTGCAATAGTAGTCGGAAATGAGAATAGGGGAATAAGTGATGAGGCCCTGGATTTGTCAGATTTGCATTGCAGTATTCCAATGAAGGGCATGGTGGATTCTTTCAATGTTTCAGTTGCTGCAGGCATTCTCATGCACCATGCTGTTTGTGATAGAACTTCTCGCCTGGGCTGTCATGGTGATCTGACATCTGAAGAGAACCAAATTCTTCTTGCTGAGTTTTCTCTGCGTCATAGCAAGAATTCAATTAGCATTGCTCATGAGTATGCAAAGCGGAAGGCAGCTCTGCTCACACCAAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002128 GO:0002938 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008757 GO:0009020 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0106050 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

355

Amino Acids

39.43

Weight (kDa)

6.12

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SpoU_methylase	PF00588	159 - 300	1.5e-35	SpoU rRNA Methylase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15390 AT5G15390
fragaria_vesca	FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560
malus_domestica	MD07G1179900.v1.1 MD11G1144500.v1.1 MD17G1055800.v1.1
prunus_persica	Prupe.3G259900_v2.0.a1
pyrus_communis	pycom17g05470
rosa_chinensis	RchiOBHm_Chr2g0166661
rosa_laevigata	RLG00000021639
rosa_multiflora	Rmu_co8387427.1_g000001 Rmu_sc0005279.1_g000001 Rmu_sc0016352.1_g000001 Rmu_sc0032184.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084320 Rroxscaffold_2G00084630
rosa_rugosa	Rorug02G0524700 Rorug02G0524800
rosa_samantha	Rh2AG591100 Rh2BG602900 Rh2CG573800 Rh2DG613700 Rh4DG034600
rosa_wichuraiana	Rw2G049230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	531
AccII	CGCG	3 cut(s)	179, 542, 688
AclWI	GGATC	2 cut(s)	218, 404
AcoI	YGGCCR	1 cut(s)	146
AcsI	RAATTY	2 cut(s)	966, 1003
AcuI	CTGAAG	1 cut(s)	975
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	4 cut(s)	152, 347, 416, 593
AfiI	CCNNNNNNNGG	3 cut(s)	323, 326, 848
AflIII	ACRYGT	1 cut(s)	712
AgsI	TTSAA	6 cut(s)	42, 159, 361, 644, 868, 1008
AjnI	CCWGG	2 cut(s)	810, 927
AluBI	AGCT	2 cut(s)	197, 1046
AluI	AGCT	2 cut(s)	197, 1046
Alw21I	GWGCWC	2 cut(s)	255, 570
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	2 cut(s)	218, 404
AlwNI	CAGNNNCTG	1 cut(s)	881
Ama87I	CYCGRG	1 cut(s)	545
AoxI	GGCC	3 cut(s)	146, 314, 807
ApeKI	GCWGC	6 cut(s)	164, 167, 197, 384, 881, 1043
ApoI	RAATTY	2 cut(s)	966, 1003
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	3 cut(s)	315, 753, 808
AsuHPI	GGTGA	3 cut(s)	401, 466, 953
AvaI	CYCGRG	1 cut(s)	545
AvaII	GGWCC	1 cut(s)	753
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	2 cut(s)	255, 570
BbvCI	CCTCAGC	1 cut(s)	380
BbvI	GCAGC	6 cut(s)	176, 179, 184, 396, 868, 1055
BccI	CCATC	2 cut(s)	235, 715
BceAI	ACGGC	2 cut(s)	133, 329
BciT130I	CCWGG	2 cut(s)	812, 929
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	2 cut(s)	20, 221
BfmI	CTRYAG	1 cut(s)	882
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	9 cut(s)	165, 168, 177, 198, 304, 367, 385, 882, 1044
BlsI	GCNGC	9 cut(s)	166, 169, 178, 199, 305, 368, 386, 883, 1045
Bme1390I	CCNGG	2 cut(s)	812, 929
Bme18I	GGWCC	1 cut(s)	753
BmeT110I	CYCGRG	1 cut(s)	545
BmgT120I	GGNCC	3 cut(s)	315, 753, 808
BmiI	GGNNCC	3 cut(s)	49, 317, 341
BmrFI	CCNGG	2 cut(s)	812, 929
BmsI	GCATC	2 cut(s)	590, 715
Bpu10I	CCTNAGC	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	5 cut(s)	177, 246, 810, 928, 1058
Bsc4I	CCNNNNNNNGG	3 cut(s)	323, 326, 848
Bse1I	ACTGG	2 cut(s)	402, 755
Bse3DI	GCAATG	2 cut(s)	829, 1014
BseBI	CCWGG	2 cut(s)	812, 929
BseDI	CCNNGG	5 cut(s)	177, 246, 810, 928, 1058
BseGI	GGATG	5 cut(s)	227, 430, 581, 726, 730
BseLI	CCNNNNNNNGG	3 cut(s)	323, 326, 848
BseMI	GCAATG	2 cut(s)	829, 1014
BseMII	CTCAG	3 cut(s)	136, 394, 969
BseNI	ACTGG	2 cut(s)	402, 755
BseRI	GAGGAG	2 cut(s)	68, 248
BseX3I	CGGCCG	1 cut(s)	146
BseXI	GCAGC	6 cut(s)	176, 179, 184, 396, 868, 1055
Bsh1236I	CGCG	3 cut(s)	179, 542, 688
Bsh1285I	CGRYCG	1 cut(s)	149
BshFI	GGCC	3 cut(s)	148, 316, 809
BsiEI	CGRYCG	1 cut(s)	149
BsiHKAI	GWGCWC	2 cut(s)	255, 570
BsiHKCI	CYCGRG	1 cut(s)	545
BsiWI	CGTACG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	665
BslI	CCNNNNNNNGG	3 cut(s)	323, 326, 848
BsmAI	GTCTC	1 cut(s)	264
BsmBI	CGTCTC	1 cut(s)	264
BsmFI	GGGAC	1 cut(s)	665
BsmI	GAATGC	1 cut(s)	888
BsnI	GGCC	3 cut(s)	148, 316, 809
BsoBI	CYCGRG	1 cut(s)	545
Bsp1286I	GDGCHC	3 cut(s)	123, 255, 570
Bsp143I	GATC	3 cut(s)	223, 409, 943
BspANI	GGCC	3 cut(s)	148, 316, 809
BspCNI	CTCAG	3 cut(s)	135, 393, 970
BspFNI	CGCG	3 cut(s)	179, 542, 688
BspHI	TCATGA	1 cut(s)	1021
BspLI	GGNNCC	3 cut(s)	49, 317, 341
BspMAI	CTGCAG	1 cut(s)	886
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	2 cut(s)	218, 404
BsrBI	CCGCTC	1 cut(s)	531
BsrDI	GCAATG	2 cut(s)	829, 1014
BsrI	ACTGG	2 cut(s)	402, 755
BssECI	CCNNGG	5 cut(s)	177, 246, 810, 928, 1058
BssMI	GATC	3 cut(s)	223, 409, 943
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	1058
Bst2UI	CCWGG	2 cut(s)	812, 929
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	2 cut(s)	43, 951
BstACI	GRCGYC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	886
BstDEI	CTNAG	3 cut(s)	122, 380, 978
BstDSI	CCRYGG	2 cut(s)	177, 246
BstF5I	GGATG	5 cut(s)	227, 430, 581, 726, 730
BstFNI	CGCG	3 cut(s)	179, 542, 688
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	3 cut(s)	226, 412, 946
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	3 cut(s)	223, 409, 943
BstMCI	CGRYCG	1 cut(s)	149
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 173, 176, 612
BstNI	CCWGG	2 cut(s)	812, 929
BstNSI	RCATGY	1 cut(s)	716
BstSCI	CCNGG	2 cut(s)	810, 927
BstSFI	CTRYAG	1 cut(s)	882
BstUI	CGCG	3 cut(s)	179, 542, 688
BstV1I	GCAGC	6 cut(s)	176, 179, 184, 396, 868, 1055
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BstZI	CGGCCG	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	148, 316, 809
BtgI	CCRYGG	2 cut(s)	177, 246
BtgZI	GCGATG	1 cut(s)	669
BtsCI	GGATG	5 cut(s)	227, 430, 581, 726, 730
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	886
CaiI	CAGNNNCTG	1 cut(s)	881
CciI	TCATGA	1 cut(s)	1021
CfoI	GCGC	1 cut(s)	544
Cfr13I	GGNCC	3 cut(s)	315, 753, 808
Cfr42I	CCGCGG	1 cut(s)	180
CseI	GACGC	3 cut(s)	548, 587, 980
Csp6I	GTAC	4 cut(s)	151, 346, 415, 592
CspCI	CAANNNNNGTGG	2 cut(s)	696, 731
CviQI	GTAC	4 cut(s)	151, 346, 415, 592
DdeI	CTNAG	3 cut(s)	122, 380, 978
DpnI	GATC	3 cut(s)	225, 411, 945
DpnII	GATC	3 cut(s)	223, 409, 943
EaeI	YGGCCR	1 cut(s)	146
EagI	CGGCCG	1 cut(s)	146
Eam1104I	CTCTTC	2 cut(s)	43, 951
EarI	CTCTTC	2 cut(s)	43, 951
EciI	GGCGGA	1 cut(s)	523
EclXI	CGGCCG	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	1058
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	753
Eco52I	CGGCCG	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	975
Eco88I	CYCGRG	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	808
EcoRI	GAATTC	1 cut(s)	1003
EcoRII	CCWGG	2 cut(s)	810, 927
EcoT14I	CCWWGG	1 cut(s)	1058
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	1058
Esp3I	CGTCTC	1 cut(s)	264
FaqI	GGGAC	1 cut(s)	665
Fnu4HI	GCNGC	9 cut(s)	165, 168, 177, 198, 304, 367, 385, 882, 1044
FokI	GGATG	5 cut(s)	214, 437, 568, 733, 737
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	9 cut(s)	165, 168, 177, 198, 304, 367, 385, 882, 1044
FspBI	CTAG	2 cut(s)	20, 221
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	9 cut(s)	165, 168, 177, 198, 304, 367, 385, 882, 1044
HaeIII	GGCC	3 cut(s)	148, 316, 809
HgaI	GACGC	3 cut(s)	548, 587, 980
HhaI	GCGC	1 cut(s)	544
Hin1I	GRCGYC	1 cut(s)	276
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HinfI	GANTC	6 cut(s)	233, 357, 460, 550, 653, 860
HphI	GGTGA	3 cut(s)	401, 466, 953
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188III	TCNNGA	4 cut(s)	280, 547, 662, 1022
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	4 cut(s)	208, 278, 281, 542
HpyAV	CCTTC	3 cut(s)	427, 841, 1033
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	9 cut(s)	12, 164, 704, 767, 829, 834, 884, 898, 1031
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 173, 176, 612
HpyF3I	CTNAG	3 cut(s)	122, 380, 978
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	276
HspAI	GCGC	1 cut(s)	542
KspI	CCGCGG	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	223, 409, 943
LmnI	GCTCC	5 cut(s)	53, 205, 250, 536, 620
Lsp1109I	GCAGC	6 cut(s)	176, 179, 184, 396, 868, 1055
LweI	GCATC	2 cut(s)	590, 715
MaeI	CTAG	2 cut(s)	20, 221
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	4 cut(s)	136, 234, 467, 575
MalI	GATC	3 cut(s)	225, 411, 945
MbiI	CCGCTC	1 cut(s)	531
MboI	GATC	3 cut(s)	223, 409, 943
MboII	GAAGA	3 cut(s)	30, 962, 968
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	3 cut(s)	123, 255, 570
MluCI	AATT	6 cut(s)	65, 159, 699, 966, 1003, 1008
MlyI	GAGTC	2 cut(s)	242, 647
MmeI	TCCRAC	3 cut(s)	82, 615, 757
MslI	CAYNNNNRTG	2 cut(s)	893, 1026
MspA1I	CMGCKG	2 cut(s)	179, 387
MspR9I	CCNGG	2 cut(s)	812, 929
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	888
MvaI	CCWGG	2 cut(s)	812, 929
MvnI	CGCG	3 cut(s)	179, 542, 688
MwoI	GCNNNNNNNGC	4 cut(s)	161, 173, 176, 612
NdeII	GATC	3 cut(s)	223, 409, 943
NlaIV	GGNNCC	3 cut(s)	49, 317, 341
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	3 cut(s)	136, 234, 575
NspI	RCATGY	1 cut(s)	716
PagI	TCATGA	1 cut(s)	1021
PciI	ACATGT	1 cut(s)	712
PctI	GAATGC	1 cut(s)	888
PfeI	GAWTC	4 cut(s)	357, 460, 550, 860
Pfl23II	CGTACG	1 cut(s)	150
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	9 cut(s)	166, 169, 178, 199, 305, 368, 386, 883, 1045
PleI	GAGTC	2 cut(s)	241, 647
PpsI	GAGTC	2 cut(s)	241, 647
PscI	ACATGT	1 cut(s)	712
Psp6I	CCWGG	2 cut(s)	810, 927
PspGI	CCWGG	2 cut(s)	810, 927
PspLI	CGTACG	1 cut(s)	150
PspN4I	GGNNCC	3 cut(s)	49, 317, 341
PspPI	GGNCC	3 cut(s)	315, 753, 808
PstI	CTGCAG	1 cut(s)	886
PstNI	CAGNNNCTG	1 cut(s)	881
PsuI	RGATCY	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	275
RsaI	GTAC	4 cut(s)	152, 347, 416, 593
RsaNI	GTAC	4 cut(s)	151, 346, 415, 592
RseI	CAYNNNNRTG	2 cut(s)	893, 1026
SacII	CCGCGG	1 cut(s)	180
SatI	GCNGC	9 cut(s)	165, 168, 177, 198, 304, 367, 385, 882, 1044
Sau3AI	GATC	3 cut(s)	223, 409, 943
Sau96I	GGNCC	3 cut(s)	315, 753, 808
SchI	GAGTC	2 cut(s)	242, 647
ScrFI	CCNGG	2 cut(s)	812, 929
SduI	GDGCHC	3 cut(s)	123, 255, 570
SfaNI	GCATC	2 cut(s)	590, 715
SfcI	CTRYAG	1 cut(s)	882
Sfr303I	CCGCGG	1 cut(s)	180
SgrBI	CCGCGG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	753
SmiMI	CAYNNNNRTG	2 cut(s)	893, 1026
SmlI	CTYRAG	1 cut(s)	660
SmoI	CTYRAG	1 cut(s)	660
Sse9I	AATT	6 cut(s)	65, 159, 699, 966, 1003, 1008
SspMI	CTAG	2 cut(s)	20, 221
StyD4I	CCNGG	2 cut(s)	810, 927
StyI	CCWWGG	1 cut(s)	1058
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	2 cut(s)	351, 697
TasI	AATT	6 cut(s)	65, 159, 699, 966, 1003, 1008
TauI	GCSGC	3 cut(s)	179, 306, 369
TfiI	GAWTC	4 cut(s)	357, 460, 550, 860
TseFI	GTSAC	3 cut(s)	136, 234, 575
TseI	GCWGC	6 cut(s)	164, 167, 197, 384, 881, 1043
Tsp45I	GTSAC	3 cut(s)	136, 234, 575
TspDTI	ATGAA	4 cut(s)	58, 305, 551, 860
TspGWI	ACGGA	2 cut(s)	192, 402
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	753
XapI	RAATTY	2 cut(s)	966, 1003
XceI	RCATGY	1 cut(s)	716
XspI	CTAG	2 cut(s)	20, 221
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.