Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005805

Physical Location & Seq

Genomic Coordinates Reverse (-)

24638149 .. 24641527

Gene Structure 3379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G259900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAGTGCCTGCAAAACCCTAGTCCGTACATCTCTCTCTTCGATCAGTTCCAGTCTCCGAGCCAGTGGACCACCCATCCCTCTGCTCCACTCACCCTCCCTCCGCTTCTCTCCTCTCCTTTCACCCAATCAAGGGCTCAGACTTGCTTCGCACAATGTTCCTTCACGGCCGTACGCTTCAATTTCAACAGAAGCGGCAGATTTCACAGACGAAGCCCAATTCACAGACTCAACCCTAGAACCGCCGGAGATTCCAACGCAAGACACCGTGGAGCAACTGCTCAAGCAGAAAAACGACGTCGGACGCCTGATGAAAATGGAGCGCAGCCCTGAGTCCGCACACCAGCGCGGCGGTCGGTGGTTCCCATACCTCGATAAGTTCAGCTGCGGGGAAGATGCTTATCTCAACAGCGCTGAGGTTCTGGATGCTTTGGATCCGTACATATTGGATGTGAGGAAGGAGAGATTCAGGAGGGTGGTGAAGAACCGGAGCTACTCGGTGTGTTTGGTGGTCGAAGGGTTGGGCGATTTCGGCAACGTCTCGGCCGCATTCCGGTCCGCCGATGCGCTCGGGTTTCAGTCGGTTCATGTGCTTTCGTGCGACAGCTCCAAAAGGTATAGAGACAATCGCCATGTCAGTATGGGAGCAGAGAAATGGTTGGACATTGAACTTTGGGACTCTACTCCTGAGTGCTTTGAAGTTCTGAAATCGCGTGGTTATCGAATTGCCACAACACATGTGGGCATGGATGCGGTGTCTGTTTACGACATGGATTGGTCATGCCCAACAGCAATAGTAGTCGGAAATGAAAATAGGGGAATAAGTGATGAGGCCCTGGATTTGTCAGATTTGCATTGCAGTATTCCGATGAAAGGCATGGTGGACTCTTTCAATGTTTCAGTTGCTGCAGGCATTCTCATGCACCATGCTGTTTGTGATAGAACTTCTCGCCTGGGTTGCCATGGTGATCTGACATTTGAAGAGAGCCAAATTCTGCTTGCTGAATTCTCTCTCCGGCATAGCAAGAGTTCAATGAGCATTGCACACGAGTATGCAAAGCGGAAGGCAGCTGTCCTCACACCAAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002128 GO:0002938 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008757 GO:0009020 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0106050 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

364

Amino Acids

40.22

Weight (kDa)

6.07

Isoelectric Point (pI)

56.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15390 AT5G15390
fragaria_vesca	FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560
malus_domestica	MD07G1179900.v1.1 MD11G1144500.v1.1 MD17G1055800.v1.1
prunus_persica	Prupe.3G259900_v2.0.a1
pyrus_communis	pycom17g05470
rosa_chinensis	RchiOBHm_Chr2g0166661
rosa_laevigata	RLG00000021639
rosa_multiflora	Rmu_co8387427.1_g000001 Rmu_sc0005279.1_g000001 Rmu_sc0016352.1_g000001 Rmu_sc0032184.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084320 Rroxscaffold_2G00084630
rosa_rugosa	Rorug02G0524700 Rorug02G0524800
rosa_samantha	Rh2AG591100 Rh2BG602900 Rh2CG573800 Rh2DG613700 Rh4DG034600
rosa_wichuraiana	Rw2G049230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	300
AccII	CGCG	2 cut(s)	348, 712
AclWI	GGATC	2 cut(s)	428, 441
AcoI	YGGCCR	2 cut(s)	167, 543
AcsI	RAATTY	2 cut(s)	990, 1004
AcyI	GRCGYC	2 cut(s)	297, 304
AfaI	GTAC	3 cut(s)	28, 173, 440
AfeI	AGCGCT	1 cut(s)	412
AfiI	CCNNNNNNNGG	4 cut(s)	131, 132, 552, 872
AflIII	ACRYGT	1 cut(s)	736
AgsI	TTSAA	7 cut(s)	180, 186, 668, 698, 892, 980, 1032
AjnI	CCWGG	2 cut(s)	834, 951
AluBI	AGCT	4 cut(s)	384, 492, 606, 1070
AluI	AGCT	4 cut(s)	384, 492, 606, 1070
Alw26I	GTCTC	3 cut(s)	59, 544, 615
AlwI	GGATC	2 cut(s)	428, 441
AlwNI	CAGNNNCTG	1 cut(s)	905
Ama87I	CYCGRG	1 cut(s)	569
Aor51HI	AGCGCT	1 cut(s)	412
AoxI	GGCC	3 cut(s)	167, 543, 831
ApeKI	GCWGC	4 cut(s)	324, 384, 905, 1067
ApoI	RAATTY	2 cut(s)	990, 1004
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspLEI	GCGC	4 cut(s)	324, 348, 413, 568
AspS9I	GGNCC	3 cut(s)	68, 555, 832
AsuHPI	GGTGA	4 cut(s)	84, 114, 490, 977
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	2 cut(s)	68, 555
BamHI	GGATCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	138
BauI	CACGAG	1 cut(s)	1046
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	4 cut(s)	336, 371, 892, 1079
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	2 cut(s)	154, 182
BciT130I	CCWGG	2 cut(s)	836, 953
BcoDI	GTCTC	3 cut(s)	59, 544, 615
BfaI	CTAG	2 cut(s)	20, 236
BfmI	CTRYAG	1 cut(s)	906
BfoI	RGCGCY	1 cut(s)	414
BisI	GCNGC	7 cut(s)	195, 325, 349, 385, 546, 906, 1068
BlsI	GCNGC	7 cut(s)	196, 326, 350, 386, 547, 907, 1069
Bme1390I	CCNGG	2 cut(s)	836, 953
Bme18I	GGWCC	2 cut(s)	68, 555
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	3 cut(s)	68, 555, 832
BmiI	GGNNCC	2 cut(s)	362, 435
BmrFI	CCNGG	2 cut(s)	836, 953
BmsI	GCATC	4 cut(s)	385, 415, 553, 739
Bpu10I	CCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	399
BsaHI	GRCGYC	2 cut(s)	297, 304
BsaJI	CCNNGG	5 cut(s)	267, 834, 952, 961, 1082
BsaWI	WCCGGW	2 cut(s)	486, 552
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 84, 110, 114
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 132, 552, 872
Bse1I	ACTGG	2 cut(s)	51, 63
Bse3DI	GCAATG	2 cut(s)	853, 1038
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	2 cut(s)	836, 953
BseDI	CCNNGG	5 cut(s)	267, 834, 952, 961, 1082
BseGI	GGATG	4 cut(s)	75, 430, 454, 754
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	4 cut(s)	131, 132, 552, 872
BseMI	GCAATG	2 cut(s)	853, 1038
BseMII	CTCAG	4 cut(s)	151, 321, 405, 678
BseNI	ACTGG	2 cut(s)	51, 63
BseRI	GAGGAG	1 cut(s)	102
BseX3I	CGGCCG	2 cut(s)	167, 543
BseXI	GCAGC	4 cut(s)	336, 371, 892, 1079
Bsh1236I	CGCG	2 cut(s)	348, 712
Bsh1285I	CGRYCG	3 cut(s)	170, 355, 546
BshFI	GGCC	3 cut(s)	169, 545, 833
BsiEI	CGRYCG	3 cut(s)	170, 355, 546
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	4 cut(s)	245, 487, 553, 1015
BsiWI	CGTACG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	689
BslI	CCNNNNNNNGG	4 cut(s)	131, 132, 552, 872
BsmAI	GTCTC	3 cut(s)	59, 544, 615
BsmBI	CGTCTC	1 cut(s)	544
BsmFI	GGGAC	1 cut(s)	689
BsmI	GAATGC	2 cut(s)	548, 912
BsnI	GGCC	3 cut(s)	169, 545, 833
BsoBI	CYCGRG	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	42, 433, 967
Bsp19I	CCATGG	1 cut(s)	961
BspANI	GGCC	3 cut(s)	169, 545, 833
BspCNI	CTCAG	4 cut(s)	150, 322, 406, 679
BspFNI	CGCG	2 cut(s)	348, 712
BspLI	GGNNCC	2 cut(s)	362, 435
BspMAI	CTGCAG	1 cut(s)	910
BspPI	GGATC	2 cut(s)	428, 441
BsrDI	GCAATG	2 cut(s)	853, 1038
BsrI	ACTGG	2 cut(s)	51, 63
BssECI	CCNNGG	5 cut(s)	267, 834, 952, 961, 1082
BssMI	GATC	3 cut(s)	42, 433, 967
BssNI	GRCGYC	2 cut(s)	297, 304
BssSI	CACGAG	1 cut(s)	1046
BssT1I	CCWWGG	2 cut(s)	961, 1082
Bst2BI	CACGAG	1 cut(s)	1046
Bst2UI	CCWGG	2 cut(s)	836, 953
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	2 cut(s)	43, 975
BstACI	GRCGYC	2 cut(s)	297, 304
BstC8I	GCNNGC	3 cut(s)	10, 910, 999
BstDEI	CTNAG	4 cut(s)	137, 330, 414, 687
BstDSI	CCRYGG	2 cut(s)	267, 961
BstF5I	GGATG	4 cut(s)	75, 430, 454, 754
BstFNI	CGCG	2 cut(s)	348, 712
BstH2I	RGCGCY	1 cut(s)	414
BstHHI	GCGC	4 cut(s)	324, 348, 413, 568
BstKTI	GATC	3 cut(s)	45, 436, 970
BstMAI	GTCTC	3 cut(s)	59, 544, 615
BstMBI	GATC	3 cut(s)	42, 433, 967
BstMCI	CGRYCG	3 cut(s)	170, 355, 546
BstMWI	GCNNNNNNNGC	2 cut(s)	531, 957
BstNI	CCWGG	2 cut(s)	836, 953
BstNSI	RCATGY	1 cut(s)	740
BstSCI	CCNGG	2 cut(s)	834, 951
BstSFI	CTRYAG	1 cut(s)	906
BstUI	CGCG	2 cut(s)	348, 712
BstV1I	GCAGC	4 cut(s)	336, 371, 892, 1079
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BstZI	CGGCCG	2 cut(s)	167, 543
BsuRI	GGCC	3 cut(s)	169, 545, 833
BtgI	CCRYGG	2 cut(s)	267, 961
BtsCI	GGATG	4 cut(s)	75, 430, 454, 754
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	3 cut(s)	10, 910, 999
CaiI	CAGNNNCTG	1 cut(s)	905
CfoI	GCGC	4 cut(s)	324, 348, 413, 568
Cfr13I	GGNCC	3 cut(s)	68, 555, 832
CpoI	CGGWCCG	1 cut(s)	555
CseI	GACGC	1 cut(s)	312
Csp6I	GTAC	3 cut(s)	27, 172, 439
CspCI	CAANNNNNGTGG	2 cut(s)	720, 755
CspI	CGGWCCG	1 cut(s)	555
CviQI	GTAC	3 cut(s)	27, 172, 439
DdeI	CTNAG	4 cut(s)	137, 330, 414, 687
DpnI	GATC	3 cut(s)	44, 435, 969
DpnII	GATC	3 cut(s)	42, 433, 967
EaeI	YGGCCR	2 cut(s)	167, 543
EagI	CGGCCG	2 cut(s)	167, 543
Eam1104I	CTCTTC	2 cut(s)	43, 975
EarI	CTCTTC	2 cut(s)	43, 975
EciI	GGCGGA	1 cut(s)	547
EclXI	CGGCCG	2 cut(s)	167, 543
Eco130I	CCWWGG	2 cut(s)	961, 1082
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	2 cut(s)	68, 555
Eco47III	AGCGCT	1 cut(s)	412
Eco52I	CGGCCG	2 cut(s)	167, 543
Eco88I	CYCGRG	1 cut(s)	569
EcoO109I	RGGNCCY	1 cut(s)	832
EcoRI	GAATTC	1 cut(s)	1004
EcoRII	CCWGG	2 cut(s)	834, 951
EcoT14I	CCWWGG	2 cut(s)	961, 1082
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	2 cut(s)	961, 1082
Esp3I	CGTCTC	1 cut(s)	544
FaqI	GGGAC	1 cut(s)	689
FauI	CCCGC	1 cut(s)	380
Fnu4HI	GCNGC	7 cut(s)	195, 325, 349, 385, 546, 906, 1068
FokI	GGATG	4 cut(s)	62, 437, 461, 761
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	7 cut(s)	195, 325, 349, 385, 546, 906, 1068
FspBI	CTAG	2 cut(s)	20, 236
GlaI	GCGC	4 cut(s)	323, 347, 412, 567
GluI	GCNGC	7 cut(s)	195, 325, 349, 385, 546, 906, 1068
HaeII	RGCGCY	1 cut(s)	414
HaeIII	GGCC	3 cut(s)	169, 545, 833
HapII	CCGG	4 cut(s)	245, 487, 553, 1015
HgaI	GACGC	1 cut(s)	312
HhaI	GCGC	4 cut(s)	324, 348, 413, 568
Hin1I	GRCGYC	2 cut(s)	297, 304
Hin6I	GCGC	4 cut(s)	322, 346, 411, 566
HinP1I	GCGC	4 cut(s)	322, 346, 411, 566
HinfI	GANTC	6 cut(s)	227, 250, 332, 465, 677, 884
HpaII	CCGG	4 cut(s)	245, 487, 553, 1015
HphI	GGTGA	4 cut(s)	84, 114, 490, 977
Hpy166II	GTNNAC	3 cut(s)	68, 763, 883
Hpy188I	TCNGA	8 cut(s)	59, 140, 302, 705, 803, 847, 867, 972
Hpy188III	TCNNGA	3 cut(s)	422, 469, 686
Hpy8I	GTNNAC	3 cut(s)	68, 763, 883
Hpy99I	CGWCG	2 cut(s)	299, 302
HpyAV	CCTTC	4 cut(s)	171, 451, 509, 1057
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	2 cut(s)	297, 537
HpyCH4V	TGCA	7 cut(s)	12, 853, 858, 908, 922, 1043, 1055
HpyF10VI	GCNNNNNNNGC	2 cut(s)	531, 957
HpyF3I	CTNAG	4 cut(s)	137, 330, 414, 687
HpySE526I	ACGT	2 cut(s)	297, 537
Hsp92I	GRCGYC	2 cut(s)	297, 304
HspAI	GCGC	4 cut(s)	322, 346, 411, 566
Kzo9I	GATC	3 cut(s)	42, 433, 967
LmnI	GCTCC	6 cut(s)	90, 271, 319, 489, 611, 644
Lsp1109I	GCAGC	4 cut(s)	336, 371, 892, 1079
LweI	GCATC	4 cut(s)	385, 415, 553, 739
MaeI	CTAG	2 cut(s)	20, 236
MaeII	ACGT	2 cut(s)	297, 537
MalI	GATC	3 cut(s)	44, 435, 969
MboI	GATC	3 cut(s)	42, 433, 967
MboII	GAAGA	4 cut(s)	30, 404, 493, 992
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	5 cut(s)	180, 218, 723, 990, 1004
MlyI	GAGTC	4 cut(s)	221, 341, 671, 878
MmeI	TCCRAC	4 cut(s)	278, 280, 639, 781
MslI	CAYNNNNRTG	2 cut(s)	917, 1050
MspA1I	CMGCKG	2 cut(s)	384, 1070
MspI	CCGG	4 cut(s)	245, 487, 553, 1015
MspR9I	CCNGG	2 cut(s)	836, 953
Mva1269I	GAATGC	2 cut(s)	548, 912
MvaI	CCWGG	2 cut(s)	836, 953
MvnI	CGCG	2 cut(s)	348, 712
MwoI	GCNNNNNNNGC	2 cut(s)	531, 957
NcoI	CCATGG	1 cut(s)	961
NdeII	GATC	3 cut(s)	42, 433, 967
NlaIV	GGNNCC	2 cut(s)	362, 435
NmeAIII	GCCGAG	1 cut(s)	521
NspI	RCATGY	1 cut(s)	740
PciI	ACATGT	1 cut(s)	736
PctI	GAATGC	2 cut(s)	548, 912
PfeI	GAWTC	2 cut(s)	250, 465
Pfl23II	CGTACG	1 cut(s)	171
PkrI	GCNGC	7 cut(s)	196, 326, 350, 386, 547, 907, 1069
PleI	GAGTC	4 cut(s)	221, 340, 671, 878
PpsI	GAGTC	4 cut(s)	221, 340, 671, 878
PscI	ACATGT	1 cut(s)	736
Psp6I	CCWGG	2 cut(s)	834, 951
PspGI	CCWGG	2 cut(s)	834, 951
PspLI	CGTACG	1 cut(s)	171
PspN4I	GGNNCC	2 cut(s)	362, 435
PspPI	GGNCC	3 cut(s)	68, 555, 832
PsrI	GAACNNNNNNTAC	2 cut(s)	476, 508
PstI	CTGCAG	1 cut(s)	910
PstNI	CAGNNNCTG	1 cut(s)	905
PsuI	RGATCY	1 cut(s)	433
PvuII	CAGCTG	2 cut(s)	384, 1070
RsaI	GTAC	3 cut(s)	28, 173, 440
RsaNI	GTAC	3 cut(s)	27, 172, 439
RseI	CAYNNNNRTG	2 cut(s)	917, 1050
Rsr2I	CGGWCCG	1 cut(s)	555
RsrII	CGGWCCG	1 cut(s)	555
SatI	GCNGC	7 cut(s)	195, 325, 349, 385, 546, 906, 1068
Sau3AI	GATC	3 cut(s)	42, 433, 967
Sau96I	GGNCC	3 cut(s)	68, 555, 832
SchI	GAGTC	4 cut(s)	221, 341, 671, 878
ScrFI	CCNGG	2 cut(s)	836, 953
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	9 cut(s)	300, 372, 386, 420, 494, 540, 608, 617, 1072
SfaNI	GCATC	4 cut(s)	385, 415, 553, 739
SfcI	CTRYAG	1 cut(s)	906
SinI	GGWCC	2 cut(s)	68, 555
SmiMI	CAYNNNNRTG	2 cut(s)	917, 1050
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	5 cut(s)	180, 218, 723, 990, 1004
SspMI	CTAG	2 cut(s)	20, 236
StyD4I	CCNGG	2 cut(s)	834, 951
StyI	CCWWGG	2 cut(s)	961, 1082
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	2 cut(s)	300, 540
TaqI	TCGA	4 cut(s)	41, 372, 513, 721
TasI	AATT	5 cut(s)	180, 218, 723, 990, 1004
TauI	GCSGC	3 cut(s)	197, 351, 548
TfiI	GAWTC	2 cut(s)	250, 465
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	4 cut(s)	324, 384, 905, 1067
TspDTI	ATGAA	4 cut(s)	326, 575, 822, 884
TspGWI	ACGGA	2 cut(s)	14, 426
TspRI	CASTG	1 cut(s)	70
VpaK11BI	GGWCC	2 cut(s)	68, 555
XapI	RAATTY	2 cut(s)	990, 1004
XceI	RCATGY	1 cut(s)	740
XcmI	CCANNNNNNNNNTGG	1 cut(s)	736
XspI	CTAG	2 cut(s)	20, 236
ZraI	GACGTC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.