Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005805

Physical Location & Seq

Genomic Coordinates Forward (+)

13404949 .. 13405758

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1144500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGTTCCATGTTATGTTTGGTATGCGCATGACATAACGGGAGAGTTGTTCTATTCTGCGTTTGGTAAGCGCAAGACAGAACGAAACCAAAATGTTAAAATGACTAACCGACCCACTATCTGCAAAACCCTAGTATGTACATCTCTCTCCTCAATCACCTCCACCCTCCGAACCAATCGACCCACTGTCTCTCTTCTCCACTCCCCCTCCCTCCTCTTCTCTCCGCTTCCTTCCAACCAAGGTACTCTTTGTCTCTCGACACTCATACACACATTTCTAACTCAATTTTGTGATTTGAATTTGAAATTAGCACTCAGGCATGCTCCGTACAATGTTCATTCACGGCCATACGCTTCAATTTCATATGAAGCAGCTGCTGCAGATTTCACAGACGAAGCTCACTCCGCGGACTCAACCCTAGAACCGCCGGAGAACCCGACTCAGGAAACCGTGGAGGAGCTTCTGAGGAAGAAAAACAAAGTCGCGCGCCTGATGAAAATGGAACGCCGCCACGAGTCTGCACACCAAATCGGCGGTCGATGGTTCTCGCATCTGGACAAGTTTAGCTGCGGTGAAGGTGCTTTTCTCAATAGCGGTGAGGTGCTTAAAGCGGTGGATCCGTACATAATGTATGTGAGGAAGGAGAAGTTTAGGAAAGTGGTGAAGAATCGGAGTTACGAGGTGTGTCTAGTGGTTAAAGGATTGGGAGATTTCGGCAATGTATCGACGGTGTTTCGGTCTGCAGATGCGTTCGGGTTTCAGTCGGTTCATGTGGTATCATGCGACTCCAAAAGGTGCAACGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002128 GO:0002938 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008757 GO:0009020 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0106050 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

270

Amino Acids

30.34

Weight (kDa)

9.01

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15390 AT5G15390
fragaria_vesca	FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560
malus_domestica	MD07G1179900.v1.1 MD11G1144500.v1.1 MD17G1055800.v1.1
prunus_persica	Prupe.3G259900_v2.0.a1
pyrus_communis	pycom17g05470
rosa_chinensis	RchiOBHm_Chr2g0166661
rosa_laevigata	RLG00000021639
rosa_multiflora	Rmu_co8387427.1_g000001 Rmu_sc0005279.1_g000001 Rmu_sc0016352.1_g000001 Rmu_sc0032184.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084320 Rroxscaffold_2G00084630
rosa_rugosa	Rorug02G0524700 Rorug02G0524800
rosa_samantha	Rh2AG591100 Rh2BG602900 Rh2CG573800 Rh2DG613700 Rh4DG034600
rosa_wichuraiana	Rw2G049230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	27
AccII	CGCG	3 cut(s)	407, 485, 487
AciI	CCGC	9 cut(s)	224, 405, 407, 425, 508, 534, 570, 594, 611
AclWI	GGATC	2 cut(s)	611, 624
AcoI	YGGCCR	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	298
AfaI	GTAC	4 cut(s)	139, 244, 329, 623
AfiI	CCNNNNNNNGG	1 cut(s)	442
AgsI	TTSAA	3 cut(s)	298, 304, 357
AhdI	GACNNNNNGTC	1 cut(s)	185
AluBI	AGCT	4 cut(s)	374, 398, 460, 567
AluI	AGCT	4 cut(s)	374, 398, 460, 567
Alw26I	GTCTC	2 cut(s)	193, 257
AlwI	GGATC	2 cut(s)	611, 624
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	4 cut(s)	371, 374, 377, 567
ApoI	RAATTY	1 cut(s)	298
ArsI	GACNNNNNNTTYG	2 cut(s)	520, 552
AspLEI	GCGC	4 cut(s)	28, 72, 487, 489
AsuHPI	GGTGA	4 cut(s)	148, 584, 608, 673
BamHI	GGATCC	1 cut(s)	616
BauI	CACGAG	1 cut(s)	512
BbvI	GCAGC	4 cut(s)	361, 364, 383, 554
BccI	CCATC	1 cut(s)	534
BceAI	ACGGC	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	193, 257
BfaI	CTAG	3 cut(s)	131, 419, 689
BfmI	CTRYAG	2 cut(s)	378, 741
BisI	GCNGC	5 cut(s)	372, 375, 378, 508, 568
BlsI	GCNGC	5 cut(s)	373, 376, 379, 509, 569
BmeRI	GACNNNNNGTC	1 cut(s)	185
BmiI	GGNNCC	2 cut(s)	6, 618
BmsI	GCATC	2 cut(s)	559, 736
BsaJI	CCNNGG	3 cut(s)	238, 405, 450
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse3DI	GCAATG	1 cut(s)	724
BseDI	CCNNGG	3 cut(s)	238, 405, 450
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMI	GCAATG	1 cut(s)	724
BseMII	CTCAG	3 cut(s)	328, 455, 455
BsePI	GCGCGC	1 cut(s)	485
BseRI	GAGGAG	3 cut(s)	139, 203, 470
BseXI	GCAGC	4 cut(s)	361, 364, 383, 554
BsgI	GTGCAG	1 cut(s)	504
Bsh1236I	CGCG	3 cut(s)	407, 485, 487
Bsh1285I	CGRYCG	1 cut(s)	538
BshFI	GGCC	1 cut(s)	346
BsiEI	CGRYCG	1 cut(s)	538
BsiSI	CCGG	1 cut(s)	428
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	2 cut(s)	193, 257
BsnI	GGCC	1 cut(s)	346
Bsp1407I	TGTACA	1 cut(s)	137
Bsp143I	GATC	1 cut(s)	616
BspACI	CCGC	9 cut(s)	224, 405, 407, 425, 508, 534, 570, 594, 611
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	3 cut(s)	327, 454, 456
BspFNI	CGCG	3 cut(s)	407, 485, 487
BspLI	GGNNCC	2 cut(s)	6, 618
BspMAI	CTGCAG	2 cut(s)	382, 745
BspPI	GGATC	2 cut(s)	611, 624
BsrDI	GCAATG	1 cut(s)	724
BsrGI	TGTACA	1 cut(s)	137
BssECI	CCNNGG	3 cut(s)	238, 405, 450
BssHII	GCGCGC	1 cut(s)	485
BssMI	GATC	1 cut(s)	616
BssSI	CACGAG	1 cut(s)	512
BssT1I	CCWWGG	1 cut(s)	238
Bst2BI	CACGAG	1 cut(s)	512
Bst4CI	ACNGT	3 cut(s)	187, 451, 730
Bst6I	CTCTTC	2 cut(s)	198, 221
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstAUI	TGTACA	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	321, 487
BstDEI	CTNAG	3 cut(s)	314, 441, 464
BstDSI	CCRYGG	2 cut(s)	405, 450
BstFNI	CGCG	3 cut(s)	407, 485, 487
BstHHI	GCGC	4 cut(s)	28, 72, 487, 489
BstKTI	GATC	1 cut(s)	619
BstMAI	GTCTC	2 cut(s)	193, 257
BstMBI	GATC	1 cut(s)	616
BstMCI	CGRYCG	1 cut(s)	538
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 404
BstNSI	RCATGY	1 cut(s)	323
BstSFI	CTRYAG	2 cut(s)	378, 741
BstUI	CGCG	3 cut(s)	407, 485, 487
BstV1I	GCAGC	4 cut(s)	361, 364, 383, 554
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	1 cut(s)	346
BtgI	CCRYGG	2 cut(s)	405, 450
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	321, 487
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	4 cut(s)	28, 72, 487, 489
Cfr42I	CCGCGG	1 cut(s)	408
Csp6I	GTAC	4 cut(s)	138, 243, 328, 622
CviAII	CATG	5 cut(s)	9, 29, 320, 770, 780
CviJI	RGCY	5 cut(s)	346, 374, 398, 460, 567
CviKI_1	RGCY	5 cut(s)	346, 374, 398, 460, 567
CviQI	GTAC	4 cut(s)	138, 243, 328, 622
DdeI	CTNAG	3 cut(s)	314, 441, 464
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
DriI	GACNNNNNGTC	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	344
Eam1104I	CTCTTC	2 cut(s)	198, 221
Eam1105I	GACNNNNNGTC	1 cut(s)	185
EarI	CTCTTC	2 cut(s)	198, 221
Eco130I	CCWWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	5 cut(s)	12, 32, 323, 773, 783
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FatI	CATG	5 cut(s)	8, 28, 319, 769, 779
FauNDI	CATATG	1 cut(s)	364
Fnu4HI	GCNGC	5 cut(s)	372, 375, 378, 508, 568
Fsp4HI	GCNGC	5 cut(s)	372, 375, 378, 508, 568
FspAI	RTGCGCAY	1 cut(s)	27
FspBI	CTAG	3 cut(s)	131, 419, 689
FspI	TGCGCA	1 cut(s)	27
GlaI	GCGC	4 cut(s)	27, 71, 486, 488
GluI	GCNGC	5 cut(s)	372, 375, 378, 508, 568
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	1 cut(s)	428
HhaI	GCGC	4 cut(s)	28, 72, 487, 489
Hin1II	CATG	5 cut(s)	12, 32, 323, 773, 783
Hin6I	GCGC	4 cut(s)	26, 70, 485, 487
HinP1I	GCGC	4 cut(s)	26, 70, 485, 487
HinfI	GANTC	5 cut(s)	410, 439, 515, 667, 785
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	4 cut(s)	148, 584, 608, 673
Hpy188I	TCNGA	3 cut(s)	170, 465, 672
Hpy188III	TCNNGA	3 cut(s)	256, 443, 554
Hpy99I	CGWCG	1 cut(s)	730
HpyAV	CCTTC	3 cut(s)	240, 569, 634
HpyCH4III	ACNGT	3 cut(s)	187, 451, 730
HpyCH4V	TGCA	5 cut(s)	123, 380, 521, 743, 798
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 404
HpyF3I	CTNAG	3 cut(s)	314, 441, 464
Hsp92II	CATG	5 cut(s)	12, 32, 323, 773, 783
HspAI	GCGC	4 cut(s)	26, 70, 485, 487
KspI	CCGCGG	1 cut(s)	408
Kzo9I	GATC	1 cut(s)	616
LmnI	GCTCC	2 cut(s)	328, 457
LpnPI	CCDG	5 cut(s)	301, 428, 441, 503, 539
Lsp1109I	GCAGC	4 cut(s)	361, 364, 383, 554
LweI	GCATC	2 cut(s)	559, 736
MaeI	CTAG	3 cut(s)	131, 419, 689
MaeIII	GTNAC	1 cut(s)	674
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MboII	GAAGA	4 cut(s)	185, 208, 481, 676
MflI	RGATCY	1 cut(s)	616
MluCI	AATT	4 cut(s)	284, 298, 305, 357
MlyI	GAGTC	4 cut(s)	404, 433, 524, 779
MmeI	TCCRAC	1 cut(s)	258
MseI	TTAA	3 cut(s)	96, 606, 696
MspA1I	CMGCKG	2 cut(s)	374, 407
MspI	CCGG	1 cut(s)	428
MvnI	CGCG	3 cut(s)	407, 485, 487
MwoI	GCNNNNNNNGC	2 cut(s)	377, 404
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	1 cut(s)	616
NlaIII	CATG	5 cut(s)	12, 32, 323, 773, 783
NlaIV	GGNNCC	2 cut(s)	6, 618
NsbI	TGCGCA	1 cut(s)	27
NspI	RCATGY	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	323
PauI	GCGCGC	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	667
PkrI	GCNGC	5 cut(s)	373, 376, 379, 509, 569
PleI	GAGTC	4 cut(s)	404, 433, 523, 779
PpsI	GAGTC	4 cut(s)	404, 433, 523, 779
PspN4I	GGNNCC	2 cut(s)	6, 618
PstI	CTGCAG	2 cut(s)	382, 745
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	616
PteI	GCGCGC	1 cut(s)	485
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	4 cut(s)	139, 244, 329, 623
RsaNI	GTAC	4 cut(s)	138, 243, 328, 622
SacII	CCGCGG	1 cut(s)	408
SaqAI	TTAA	3 cut(s)	96, 606, 696
SatI	GCNGC	5 cut(s)	372, 375, 378, 508, 568
Sau3AI	GATC	1 cut(s)	616
SchI	GAGTC	4 cut(s)	404, 433, 524, 779
SfaNI	GCATC	2 cut(s)	559, 736
SfcI	CTRYAG	2 cut(s)	378, 741
Sfr303I	CCGCGG	1 cut(s)	408
SgrBI	CCGCGG	1 cut(s)	408
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	4 cut(s)	284, 298, 305, 357
SsiI	CCGC	9 cut(s)	224, 405, 407, 425, 508, 534, 570, 594, 611
SspMI	CTAG	3 cut(s)	131, 419, 689
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	3 cut(s)	187, 451, 730
TaqI	TCGA	4 cut(s)	178, 257, 538, 725
TaqII	GACCGA	1 cut(s)	726
TasI	AATT	4 cut(s)	284, 298, 305, 357
TatI	WGTACW	1 cut(s)	137
TauI	GCSGC	1 cut(s)	510
TfiI	GAWTC	1 cut(s)	667
Tru1I	TTAA	3 cut(s)	96, 606, 696
Tru9I	TTAA	3 cut(s)	96, 606, 696
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	4 cut(s)	371, 374, 377, 567
TspDTI	ATGAA	5 cut(s)	326, 351, 381, 509, 758
TspGWI	ACGGA	2 cut(s)	315, 609
TspRI	CASTG	1 cut(s)	190
XapI	RAATTY	1 cut(s)	298
XceI	RCATGY	1 cut(s)	323
XcmI	CCANNNNNNNNNTGG	1 cut(s)	15
XspI	CTAG	3 cut(s)	131, 419, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.