Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005805

Physical Location & Seq

Genomic Coordinates Forward (+)

7161346 .. 7165359

Gene Structure 4014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00084630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCCACTGCAGATCTGTCGGCGGTGCTAGGCGGCGGCCTGGCGGCAACTCGGCAGTGCTTTCGGCGGTGCTCGGCGAGGGCTCGGCGAGGCACTCGGCAAGGGCTCTACGGATGCTTTCGGCGAGGGCTCAGAGTTTCCAATGTCACTTCTCGTCCGTACGCTTCAATTGCAGCAGCAGAAGCCGCGGACTTCACAGACGAAGCTGCTCCGTCCCCAAACGAAACCCTAGATCCATCCGAGTCACAAGACACCGTGGAGCACCTCCTCACGCACCGAGACGACGTCGTGAAGTTTATGAAAATGGAACGCCGGCCTTTACGGTCCCCACTCGGAGGCGATAGGTGGTTCCCGTACCTCGACAGATTCAACTGCGGCGGTGCTTACCTCAGCAGCGGTGAGATACTGGAAGCGGTTGATCCGTACATCATGGATGTGAGGAAAGAGAGGTTTAGGAATGTGGTGAGGAATCGGAGCTACTCGGTGTGCTTGGTGGTGGAGGGATTGGGAGATTTTGGAAATGTATCGGCGGTGTTCCGCTCCGCCGACGCGCTCGGGATTCAGTCGGTTCATGTGCTCTCTTGTGACGCGTCCAAAAGATACAGAGAAAATCGCCATGTCAGCATGGGAGCAGAGAAATGGTTGGATATTGAACTTTGGGACTCCACTCAAGAGTGCTTTGAAGTTCTAACATCACGTGGTTATCGAATTGCCACAACACATGTGGGGATGGATGCGTGCATCTTGAGTAACCCTTCCATGCTATTAAAGGTGTCTATTTACGACATGGACTGGTCCTGCCCAACTGCGATAGTAGTCGGAAATGAAAATAGGGGAATAAGTGATGAGGCCCTGGATTTGTCAGATTTGCATTGCAGTATTCCAATGAAGGGCATGGTGGATTCTTTCAATGTTTCAGTTGCTGCAGGCATTCTCATGCACCATGCTGTTTGTGATAGAACTTCTCGCCTGGGTTGTCATGGTGATCTGACATCAGAAGAGAACCAAATTCTTCTTGCTGAGTTTTCTCTGCGTCATAGCAAGAATTCAATTAGCATTGCTCATGAGTATGCAAAGCGGAAGGCAGCTCTGCTCACACCAAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002128 GO:0002938 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008757 GO:0009020 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0106050 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

369

Amino Acids

40.88

Weight (kDa)

6.6

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SpoU_methylase	PF00588	162 - 314	2.7e-32	SpoU rRNA Methylase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15390 AT5G15390
fragaria_vesca	FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560
malus_domestica	MD07G1179900.v1.1 MD11G1144500.v1.1 MD17G1055800.v1.1
prunus_persica	Prupe.3G259900_v2.0.a1
pyrus_communis	pycom17g05470
rosa_chinensis	RchiOBHm_Chr2g0166661
rosa_laevigata	RLG00000021639
rosa_multiflora	Rmu_co8387427.1_g000001 Rmu_sc0005279.1_g000001 Rmu_sc0016352.1_g000001 Rmu_sc0032184.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084320 Rroxscaffold_2G00084630
rosa_rugosa	Rorug02G0524700 Rorug02G0524800
rosa_samantha	Rh2AG591100 Rh2BG602900 Rh2CG573800 Rh2DG613700 Rh4DG034600
rosa_wichuraiana	Rw2G049230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	288
AccBSI	CCGCTC	1 cut(s)	540
AccII	CGCG	3 cut(s)	188, 551, 590
AclWI	GGATC	2 cut(s)	227, 413
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	1008, 1045
AcvI	CACGTG	1 cut(s)	698
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	3 cut(s)	161, 356, 425
AfiI	CCNNNNNNNGG	2 cut(s)	335, 890
AflIII	ACRYGT	2 cut(s)	588, 721
AgsI	TTSAA	6 cut(s)	168, 370, 653, 683, 910, 1050
AjnI	CCWGG	3 cut(s)	39, 852, 969
AluBI	AGCT	3 cut(s)	206, 477, 1088
AluI	AGCT	3 cut(s)	206, 477, 1088
Alw21I	GWGCWC	3 cut(s)	74, 264, 579
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	2 cut(s)	227, 413
AlwNI	CAGNNNCTG	1 cut(s)	923
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	4 cut(s)	3, 37, 314, 849
ApeKI	GCWGC	6 cut(s)	173, 176, 206, 393, 923, 1085
ApoI	RAATTY	2 cut(s)	1008, 1045
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	3 cut(s)	324, 795, 850
AsuHPI	GGTGA	3 cut(s)	410, 475, 995
AvaI	CYCGRG	1 cut(s)	554
AvaII	GGWCC	2 cut(s)	324, 795
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	3 cut(s)	85, 108, 132
BbrPI	CACGTG	1 cut(s)	698
Bbv12I	GWGCWC	3 cut(s)	74, 264, 579
BbvCI	CCTCAGC	1 cut(s)	389
BbvI	GCAGC	6 cut(s)	185, 188, 193, 405, 910, 1097
BccI	CCATC	2 cut(s)	244, 724
BcgI	CGANNNNNNTGC	3 cut(s)	34, 44, 78
BciT130I	CCWGG	3 cut(s)	41, 854, 971
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	2 cut(s)	29, 230
BfmI	CTRYAG	2 cut(s)	9, 924
BglII	AGATCT	1 cut(s)	13
Bme1390I	CCNGG	3 cut(s)	41, 854, 971
Bme18I	GGWCC	2 cut(s)	324, 795
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	3 cut(s)	324, 795, 850
BmiI	GGNNCC	2 cut(s)	326, 350
BmrFI	CCNGG	3 cut(s)	41, 854, 971
BmsI	GCATC	3 cut(s)	104, 724, 750
Bpu10I	CCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	2 cut(s)	654, 766
BsaAI	YACGTR	1 cut(s)	698
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	5 cut(s)	186, 255, 852, 970, 1100
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 890
Bse118I	RCCGGY	1 cut(s)	312
Bse1I	ACTGG	2 cut(s)	411, 797
Bse3DI	GCAATG	2 cut(s)	871, 1056
BseBI	CCWGG	3 cut(s)	41, 854, 971
BseDI	CCNNGG	5 cut(s)	186, 255, 852, 970, 1100
BseGI	GGATG	5 cut(s)	119, 236, 439, 735, 739
BseLI	CCNNNNNNNGG	2 cut(s)	335, 890
BseMI	GCAATG	2 cut(s)	871, 1056
BseMII	CTCAG	3 cut(s)	145, 403, 1011
BseNI	ACTGG	2 cut(s)	411, 797
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	6 cut(s)	185, 188, 193, 405, 910, 1097
Bsh1236I	CGCG	3 cut(s)	188, 551, 590
BshFI	GGCC	4 cut(s)	5, 39, 316, 851
BsiHKAI	GWGCWC	3 cut(s)	74, 264, 579
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	1 cut(s)	313
BsiWI	CGTACG	1 cut(s)	159
BslFI	GGGAC	3 cut(s)	199, 310, 674
BslI	CCNNNNNNNGG	2 cut(s)	335, 890
BsmAI	GTCTC	1 cut(s)	273
BsmBI	CGTCTC	1 cut(s)	273
BsmFI	GGGAC	3 cut(s)	199, 310, 674
BsmI	GAATGC	1 cut(s)	930
BsnI	GGCC	4 cut(s)	5, 39, 316, 851
BsoBI	CYCGRG	1 cut(s)	554
Bsp1286I	GDGCHC	6 cut(s)	74, 85, 108, 132, 264, 579
Bsp143I	GATC	4 cut(s)	13, 232, 418, 985
BspANI	GGCC	4 cut(s)	5, 39, 316, 851
BspCNI	CTCAG	3 cut(s)	144, 402, 1012
BspFNI	CGCG	3 cut(s)	188, 551, 590
BspHI	TCATGA	1 cut(s)	1063
BspLI	GGNNCC	2 cut(s)	326, 350
BspMAI	CTGCAG	2 cut(s)	13, 928
BspPI	GGATC	2 cut(s)	227, 413
BsrBI	CCGCTC	1 cut(s)	540
BsrDI	GCAATG	2 cut(s)	871, 1056
BsrFI	RCCGGY	1 cut(s)	312
BsrI	ACTGG	2 cut(s)	411, 797
BssAI	RCCGGY	1 cut(s)	312
BssECI	CCNNGG	5 cut(s)	186, 255, 852, 970, 1100
BssMI	GATC	4 cut(s)	13, 232, 418, 985
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	1100
Bst2UI	CCWGG	3 cut(s)	41, 854, 971
Bst4CI	ACNGT	2 cut(s)	256, 324
Bst6I	CTCTTC	1 cut(s)	993
BstACI	GRCGYC	1 cut(s)	285
BstBAI	YACGTR	1 cut(s)	698
BstC8I	GCNNGC	3 cut(s)	314, 739, 928
BstDEI	CTNAG	3 cut(s)	131, 389, 1020
BstDSI	CCRYGG	2 cut(s)	186, 255
BstF5I	GGATG	5 cut(s)	119, 236, 439, 735, 739
BstFNI	CGCG	3 cut(s)	188, 551, 590
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	4 cut(s)	16, 235, 421, 988
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	4 cut(s)	13, 232, 418, 985
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 182, 185, 621
BstNI	CCWGG	3 cut(s)	41, 854, 971
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	3 cut(s)	39, 852, 969
BstSFI	CTRYAG	2 cut(s)	9, 924
BstUI	CGCG	3 cut(s)	188, 551, 590
BstV1I	GCAGC	6 cut(s)	185, 188, 193, 405, 910, 1097
BstX2I	RGATCY	2 cut(s)	13, 232
BstYI	RGATCY	2 cut(s)	13, 232
BsuRI	GGCC	4 cut(s)	5, 39, 316, 851
BtgI	CCRYGG	2 cut(s)	186, 255
BtsCI	GGATG	5 cut(s)	119, 236, 439, 735, 739
BtsI	GCAGTG	2 cut(s)	6, 62
BtsIMutI	CAGTG	2 cut(s)	6, 62
Cac8I	GCNNGC	3 cut(s)	314, 739, 928
CaiI	CAGNNNCTG	1 cut(s)	923
CciI	TCATGA	1 cut(s)	1063
CfoI	GCGC	1 cut(s)	553
Cfr10I	RCCGGY	1 cut(s)	312
Cfr13I	GGNCC	3 cut(s)	324, 795, 850
Cfr42I	CCGCGG	1 cut(s)	189
CseI	GACGC	4 cut(s)	557, 579, 596, 1022
Csp6I	GTAC	3 cut(s)	160, 355, 424
CspCI	CAANNNNNGTGG	2 cut(s)	705, 740
CviQI	GTAC	3 cut(s)	160, 355, 424
DdeI	CTNAG	3 cut(s)	131, 389, 1020
DpnI	GATC	4 cut(s)	15, 234, 420, 987
DpnII	GATC	4 cut(s)	13, 232, 418, 985
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	993
EarI	CTCTTC	1 cut(s)	993
EciI	GGCGGA	1 cut(s)	532
Eco130I	CCWWGG	1 cut(s)	1100
Eco24I	GRGCYC	3 cut(s)	85, 108, 132
Eco47I	GGWCC	2 cut(s)	324, 795
Eco72I	CACGTG	1 cut(s)	698
Eco88I	CYCGRG	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	850
EcoRI	GAATTC	1 cut(s)	1045
EcoRII	CCWGG	3 cut(s)	39, 852, 969
EcoT14I	CCWWGG	1 cut(s)	1100
EcoT38I	GRGCYC	3 cut(s)	85, 108, 132
ErhI	CCWWGG	1 cut(s)	1100
Esp3I	CGTCTC	1 cut(s)	273
FaqI	GGGAC	3 cut(s)	199, 310, 674
FokI	GGATG	5 cut(s)	126, 223, 446, 742, 746
FriOI	GRGCYC	3 cut(s)	85, 108, 132
FspBI	CTAG	2 cut(s)	29, 230
GlaI	GCGC	1 cut(s)	552
HaeIII	GGCC	4 cut(s)	5, 39, 316, 851
HapII	CCGG	1 cut(s)	313
HgaI	GACGC	4 cut(s)	557, 579, 596, 1022
HhaI	GCGC	1 cut(s)	553
Hin1I	GRCGYC	1 cut(s)	285
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HinfI	GANTC	6 cut(s)	242, 366, 469, 559, 662, 902
HpaII	CCGG	1 cut(s)	313
HphI	GGTGA	3 cut(s)	410, 475, 995
Hpy188I	TCNGA	8 cut(s)	134, 241, 335, 474, 821, 865, 990, 997
Hpy188III	TCNNGA	5 cut(s)	289, 556, 671, 745, 1064
Hpy99I	CGWCG	3 cut(s)	287, 290, 551
HpyAV	CCTTC	3 cut(s)	765, 883, 1075
HpyCH4III	ACNGT	2 cut(s)	256, 324
HpyCH4IV	ACGT	2 cut(s)	285, 697
HpyCH4V	TGCA	8 cut(s)	11, 173, 741, 871, 876, 926, 940, 1073
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 182, 185, 621
HpyF3I	CTNAG	3 cut(s)	131, 389, 1020
HpySE526I	ACGT	2 cut(s)	285, 697
Hsp92I	GRCGYC	1 cut(s)	285
HspAI	GCGC	1 cut(s)	551
KroI	GCCGGC	1 cut(s)	312
KroNI	GCCGGC	1 cut(s)	314
KspI	CCGCGG	1 cut(s)	189
Kzo9I	GATC	4 cut(s)	13, 232, 418, 985
LmnI	GCTCC	5 cut(s)	214, 259, 474, 545, 629
Lsp1109I	GCAGC	6 cut(s)	185, 188, 193, 405, 910, 1097
LweI	GCATC	3 cut(s)	104, 724, 750
MaeI	CTAG	2 cut(s)	29, 230
MaeII	ACGT	2 cut(s)	285, 697
MaeIII	GTNAC	4 cut(s)	145, 243, 584, 749
MalI	GATC	4 cut(s)	15, 234, 420, 987
MbiI	CCGCTC	1 cut(s)	540
MboI	GATC	4 cut(s)	13, 232, 418, 985
MboII	GAAGA	2 cut(s)	1004, 1010
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	2 cut(s)	13, 232
MhlI	GDGCHC	6 cut(s)	74, 85, 108, 132, 264, 579
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	168, 708, 1008, 1045, 1050
MluI	ACGCGT	1 cut(s)	588
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	251, 656
MmeI	TCCRAC	2 cut(s)	624, 799
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	767
MslI	CAYNNNNRTG	3 cut(s)	434, 935, 1068
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	188, 396
MspI	CCGG	1 cut(s)	313
MspR9I	CCNGG	3 cut(s)	41, 854, 971
MunI	CAATTG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	930
MvaI	CCWGG	3 cut(s)	41, 854, 971
MvnI	CGCG	3 cut(s)	188, 551, 590
MwoI	GCNNNNNNNGC	4 cut(s)	170, 182, 185, 621
NaeI	GCCGGC	1 cut(s)	314
NdeII	GATC	4 cut(s)	13, 232, 418, 985
NgoMIV	GCCGGC	1 cut(s)	312
NlaIV	GGNNCC	2 cut(s)	326, 350
NmeAIII	GCCGAG	4 cut(s)	31, 53, 64, 76
NmuCI	GTSAC	3 cut(s)	145, 243, 584
NspI	RCATGY	1 cut(s)	725
PagI	TCATGA	1 cut(s)	1063
PciI	ACATGT	1 cut(s)	721
PcsI	WCGNNNNNNNCGW	1 cut(s)	703
PctI	GAATGC	1 cut(s)	930
PdiI	GCCGGC	1 cut(s)	314
PfeI	GAWTC	4 cut(s)	366, 469, 559, 902
Pfl23II	CGTACG	1 cut(s)	159
PflFI	GACNNNGTC	1 cut(s)	284
PleI	GAGTC	2 cut(s)	250, 656
PmaCI	CACGTG	1 cut(s)	698
PmlI	CACGTG	1 cut(s)	698
PpsI	GAGTC	2 cut(s)	250, 656
Ppu21I	YACGTR	1 cut(s)	698
PscI	ACATGT	1 cut(s)	721
Psp6I	CCWGG	3 cut(s)	39, 852, 969
PspCI	CACGTG	1 cut(s)	698
PspGI	CCWGG	3 cut(s)	39, 852, 969
PspLI	CGTACG	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	326, 350
PspPI	GGNCC	3 cut(s)	324, 795, 850
PstI	CTGCAG	2 cut(s)	13, 928
PstNI	CAGNNNCTG	1 cut(s)	923
PsuI	RGATCY	2 cut(s)	13, 232
PsyI	GACNNNGTC	1 cut(s)	284
RsaI	GTAC	3 cut(s)	161, 356, 425
RsaNI	GTAC	3 cut(s)	160, 355, 424
RseI	CAYNNNNRTG	3 cut(s)	434, 935, 1068
SacII	CCGCGG	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	767
Sau3AI	GATC	4 cut(s)	13, 232, 418, 985
Sau96I	GGNCC	3 cut(s)	324, 795, 850
SchI	GAGTC	2 cut(s)	251, 656
ScrFI	CCNGG	3 cut(s)	41, 854, 971
SduI	GDGCHC	6 cut(s)	74, 85, 108, 132, 264, 579
SfaNI	GCATC	3 cut(s)	104, 724, 750
SfcI	CTRYAG	2 cut(s)	9, 924
Sfr303I	CCGCGG	1 cut(s)	189
SgrBI	CCGCGG	1 cut(s)	189
SinI	GGWCC	2 cut(s)	324, 795
SmiMI	CAYNNNNRTG	3 cut(s)	434, 935, 1068
SmlI	CTYRAG	2 cut(s)	669, 745
SmoI	CTYRAG	2 cut(s)	669, 745
Sse9I	AATT	5 cut(s)	168, 708, 1008, 1045, 1050
SspMI	CTAG	2 cut(s)	29, 230
StyD4I	CCNGG	3 cut(s)	39, 852, 969
StyI	CCWWGG	1 cut(s)	1100
TaaI	ACNGT	2 cut(s)	256, 324
TaiI	ACGT	2 cut(s)	288, 700
TaqI	TCGA	2 cut(s)	360, 706
TasI	AATT	5 cut(s)	168, 708, 1008, 1045, 1050
TauI	GCSGC	5 cut(s)	36, 39, 47, 188, 378
TfiI	GAWTC	4 cut(s)	366, 469, 559, 902
Tru1I	TTAA	1 cut(s)	767
Tru9I	TTAA	1 cut(s)	767
TscAI	CASTG	2 cut(s)	13, 62
TseFI	GTSAC	3 cut(s)	145, 243, 584
TseI	GCWGC	6 cut(s)	173, 176, 206, 393, 923, 1085
Tsp45I	GTSAC	3 cut(s)	145, 243, 584
TspDTI	ATGAA	4 cut(s)	314, 560, 840, 902
TspGWI	ACGGA	4 cut(s)	126, 147, 201, 411
TspRI	CASTG	2 cut(s)	13, 62
Tth111I	GACNNNGTC	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	324, 795
XapI	RAATTY	2 cut(s)	1008, 1045
XceI	RCATGY	1 cut(s)	725
XcmI	CCANNNNNNNNNTGG	1 cut(s)	721
XspI	CTAG	2 cut(s)	29, 230
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.