Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005279.1

Orthogroup ID

OG0005805

Physical Location & Seq

Genomic Coordinates Forward (+)

9635 .. 12220

Gene Structure 2586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005279.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atgaaaaccccctttgcctccacaactcaccatactggcatactccactctcttgcttcgcgccaaaattctccaatggcgacctgcaaaaccctagtccacacttctctctcttcaatcggctccactctccgaccccaattcattcctctcctcaatctccgcttctcccctctcctttgccccaacaaagggctcagagtttccaatgtcacttctcggccgtacgcttcaattgcagcagcagaagccgcggacttcacagacgaatctgctccgtcgccagccgaaaccctagatccatccgagtcgcaagacaccgtggagcacctcctcacgcaccgagacgacgtcgtgaagtttatgaaaatggaacgccgccctctacggtccccactcggaggcgataggtggttcccgtacctcgacagattcaactgcggcggtgcttacctcagcagcggtgagatactggaagcggttgatccgtacattatggatgtgaggaaggagaggtttaggaatgtggtgaggaatcggagctactcggtgtgcttggtggtggagggattgggagatttcggaaatgtatcggcggtgttccggtccgccgacgcgctcgggattcagtcggttcatgtgctctcttgtgacgcatccaaaaggtacagagaaaatcgccatgtcagcatgggagcagagaaatggttggatattgaactttgggactccactcaagagtgctttgaggttctaacatcgcgtggttatcgaattgcaacaacacatgtggggatggatgcggtgtctatttacaacatggactggtcctgcccaactgcaatagtagtcggaaatgagaataggggaataagtgatgaggccctggatttgtcagatttgcattgcagtattccaatgaagggcatggtggattctttcaatgtttcagttgctgcaggcattctcatgcaccatgctgtttgtgatagaacttctcgcctgggctgtcatggtgatctgacatctgaagagaaccaaattcttcttgctgagttttctctgcgtcatagcaagaattcaattagcattgctcatgagtatgcaaagcggaaggcagctctgctcacaccaaggctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002128 GO:0002938 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008757 GO:0009020 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0106050 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

380

Amino Acids

42.09

Weight (kDa)

6.43

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15390 AT5G15390
fragaria_vesca	FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560
malus_domestica	MD07G1179900.v1.1 MD11G1144500.v1.1 MD17G1055800.v1.1
prunus_persica	Prupe.3G259900_v2.0.a1
pyrus_communis	pycom17g05470
rosa_chinensis	RchiOBHm_Chr2g0166661
rosa_laevigata	RLG00000021639
rosa_multiflora	Rmu_co8387427.1_g000001 Rmu_sc0005279.1_g000001 Rmu_sc0016352.1_g000001 Rmu_sc0032184.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084320 Rroxscaffold_2G00084630
rosa_rugosa	Rorug02G0524700 Rorug02G0524800
rosa_samantha	Rh2AG591100 Rh2BG602900 Rh2CG573800 Rh2DG613700 Rh4DG034600
rosa_wichuraiana	Rw2G049230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	354
Acc36I	ACCTGC	1 cut(s)	92
AccII	CGCG	4 cut(s)	61, 254, 617, 763
AclWI	GGATC	2 cut(s)	293, 479
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	3 cut(s)	67, 1041, 1078
AcuI	CTGAAG	1 cut(s)	1050
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	4 cut(s)	227, 422, 491, 668
AfiI	CCNNNNNNNGG	4 cut(s)	191, 192, 401, 923
AflIII	ACRYGT	1 cut(s)	787
AgsI	TTSAA	6 cut(s)	117, 234, 436, 719, 943, 1083
AjnI	CCWGG	2 cut(s)	885, 1002
AluBI	AGCT	2 cut(s)	543, 1121
AluI	AGCT	2 cut(s)	543, 1121
Alw21I	GWGCWC	2 cut(s)	330, 645
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	2 cut(s)	293, 479
AlwNI	CAGNNNCTG	1 cut(s)	956
Ama87I	CYCGRG	1 cut(s)	620
AoxI	GGCC	2 cut(s)	221, 882
ApeKI	GCWGC	5 cut(s)	239, 242, 459, 956, 1118
ApoI	RAATTY	3 cut(s)	67, 1041, 1078
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
AspLEI	GCGC	2 cut(s)	63, 619
AspS9I	GGNCC	4 cut(s)	390, 606, 828, 883
AsuHPI	GGTGA	4 cut(s)	20, 476, 541, 1028
AvaI	CYCGRG	1 cut(s)	620
AvaII	GGWCC	3 cut(s)	390, 606, 828
BanII	GRGCYC	1 cut(s)	198
Bbv12I	GWGCWC	2 cut(s)	330, 645
BbvCI	CCTCAGC	1 cut(s)	455
BbvI	GCAGC	5 cut(s)	251, 254, 471, 943, 1130
BccI	CCATC	2 cut(s)	310, 790
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	2 cut(s)	887, 1004
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	2 cut(s)	95, 296
BfmI	CTRYAG	1 cut(s)	957
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	8 cut(s)	240, 243, 252, 379, 442, 460, 957, 1119
BlsI	GCNGC	8 cut(s)	241, 244, 253, 380, 443, 461, 958, 1120
Bme1390I	CCNGG	2 cut(s)	887, 1004
Bme18I	GGWCC	3 cut(s)	390, 606, 828
BmeT110I	CYCGRG	1 cut(s)	620
BmgT120I	GGNCC	4 cut(s)	390, 606, 828, 883
BmiI	GGNNCC	3 cut(s)	124, 392, 416
BmrFI	CCNGG	2 cut(s)	887, 1004
BmsI	GCATC	2 cut(s)	665, 790
Bpu10I	CCTNAGC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	720
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	5 cut(s)	252, 321, 885, 1003, 1133
BsaWI	WCCGGW	1 cut(s)	603
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 192, 401, 923
Bse1I	ACTGG	3 cut(s)	40, 477, 830
Bse3DI	GCAATG	2 cut(s)	904, 1089
BseBI	CCWGG	2 cut(s)	887, 1004
BseDI	CCNNGG	5 cut(s)	252, 321, 885, 1003, 1133
BseGI	GGATG	5 cut(s)	302, 505, 656, 801, 805
BseLI	CCNNNNNNNGG	4 cut(s)	191, 192, 401, 923
BseMI	GCAATG	2 cut(s)	904, 1089
BseMII	CTCAG	3 cut(s)	211, 469, 1044
BseNI	ACTGG	3 cut(s)	40, 477, 830
BseRI	GAGGAG	2 cut(s)	143, 323
BseX3I	CGGCCG	1 cut(s)	221
BseXI	GCAGC	5 cut(s)	251, 254, 471, 943, 1130
Bsh1236I	CGCG	4 cut(s)	61, 254, 617, 763
Bsh1285I	CGRYCG	1 cut(s)	224
BshFI	GGCC	2 cut(s)	223, 884
BsiEI	CGRYCG	1 cut(s)	224
BsiHKAI	GWGCWC	2 cut(s)	330, 645
BsiHKCI	CYCGRG	1 cut(s)	620
BsiSI	CCGG	1 cut(s)	604
BsiWI	CGTACG	1 cut(s)	225
BslFI	GGGAC	2 cut(s)	376, 740
BslI	CCNNNNNNNGG	4 cut(s)	191, 192, 401, 923
BsmAI	GTCTC	1 cut(s)	339
BsmBI	CGTCTC	1 cut(s)	339
BsmFI	GGGAC	2 cut(s)	376, 740
BsmI	GAATGC	1 cut(s)	963
BsnI	GGCC	2 cut(s)	223, 884
BsoBI	CYCGRG	1 cut(s)	620
Bsp1286I	GDGCHC	3 cut(s)	198, 330, 645
Bsp143I	GATC	3 cut(s)	298, 484, 1018
BspANI	GGCC	2 cut(s)	223, 884
BspCNI	CTCAG	3 cut(s)	210, 468, 1045
BspFNI	CGCG	4 cut(s)	61, 254, 617, 763
BspHI	TCATGA	1 cut(s)	1096
BspLI	GGNNCC	3 cut(s)	124, 392, 416
BspMAI	CTGCAG	1 cut(s)	961
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	2 cut(s)	293, 479
BsrDI	GCAATG	2 cut(s)	904, 1089
BsrI	ACTGG	3 cut(s)	40, 477, 830
BssECI	CCNNGG	5 cut(s)	252, 321, 885, 1003, 1133
BssMI	GATC	3 cut(s)	298, 484, 1018
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	1133
Bst2UI	CCWGG	2 cut(s)	887, 1004
Bst4CI	ACNGT	2 cut(s)	322, 390
Bst6I	CTCTTC	2 cut(s)	118, 1026
BstACI	GRCGYC	1 cut(s)	351
BstC8I	GCNNGC	2 cut(s)	285, 961
BstDEI	CTNAG	3 cut(s)	197, 455, 1053
BstDSI	CCRYGG	2 cut(s)	252, 321
BstF5I	GGATG	5 cut(s)	302, 505, 656, 801, 805
BstFNI	CGCG	4 cut(s)	61, 254, 617, 763
BstHHI	GCGC	2 cut(s)	63, 619
BstKTI	GATC	3 cut(s)	301, 487, 1021
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	3 cut(s)	298, 484, 1018
BstMCI	CGRYCG	1 cut(s)	224
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 248, 251, 687
BstNI	CCWGG	2 cut(s)	887, 1004
BstNSI	RCATGY	1 cut(s)	791
BstSCI	CCNGG	2 cut(s)	885, 1002
BstSFI	CTRYAG	1 cut(s)	957
BstUI	CGCG	4 cut(s)	61, 254, 617, 763
BstV1I	GCAGC	5 cut(s)	251, 254, 471, 943, 1130
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BstZI	CGGCCG	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	223, 884
BtgI	CCRYGG	2 cut(s)	252, 321
BtgZI	GCGATG	1 cut(s)	744
BtsCI	GGATG	5 cut(s)	302, 505, 656, 801, 805
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	285, 961
CaiI	CAGNNNCTG	1 cut(s)	956
CciI	TCATGA	1 cut(s)	1096
CfoI	GCGC	2 cut(s)	63, 619
Cfr13I	GGNCC	4 cut(s)	390, 606, 828, 883
Cfr42I	CCGCGG	1 cut(s)	255
CpoI	CGGWCCG	1 cut(s)	606
CseI	GACGC	3 cut(s)	623, 662, 1055
Csp6I	GTAC	4 cut(s)	226, 421, 490, 667
CspCI	CAANNNNNGTGG	2 cut(s)	771, 806
CspI	CGGWCCG	1 cut(s)	606
CviQI	GTAC	4 cut(s)	226, 421, 490, 667
DdeI	CTNAG	3 cut(s)	197, 455, 1053
DpnI	GATC	3 cut(s)	300, 486, 1020
DpnII	GATC	3 cut(s)	298, 484, 1018
EaeI	YGGCCR	1 cut(s)	221
EagI	CGGCCG	1 cut(s)	221
Eam1104I	CTCTTC	2 cut(s)	118, 1026
EarI	CTCTTC	2 cut(s)	118, 1026
EciI	GGCGGA	1 cut(s)	598
EclXI	CGGCCG	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	1133
Eco24I	GRGCYC	1 cut(s)	198
Eco47I	GGWCC	3 cut(s)	390, 606, 828
Eco52I	CGGCCG	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	1050
Eco88I	CYCGRG	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	883
EcoRI	GAATTC	1 cut(s)	1078
EcoRII	CCWGG	2 cut(s)	885, 1002
EcoT14I	CCWWGG	1 cut(s)	1133
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	1133
Esp3I	CGTCTC	1 cut(s)	339
FaqI	GGGAC	2 cut(s)	376, 740
Fnu4HI	GCNGC	8 cut(s)	240, 243, 252, 379, 442, 460, 957, 1119
FokI	GGATG	5 cut(s)	289, 512, 643, 808, 812
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	8 cut(s)	240, 243, 252, 379, 442, 460, 957, 1119
FspBI	CTAG	2 cut(s)	95, 296
GlaI	GCGC	2 cut(s)	62, 618
GluI	GCNGC	8 cut(s)	240, 243, 252, 379, 442, 460, 957, 1119
HaeIII	GGCC	2 cut(s)	223, 884
HapII	CCGG	1 cut(s)	604
HgaI	GACGC	3 cut(s)	623, 662, 1055
HhaI	GCGC	2 cut(s)	63, 619
Hin1I	GRCGYC	1 cut(s)	351
Hin6I	GCGC	2 cut(s)	61, 617
HinP1I	GCGC	2 cut(s)	61, 617
HinfI	GANTC	7 cut(s)	269, 308, 432, 535, 625, 728, 935
HpaII	CCGG	1 cut(s)	604
HphI	GGTGA	4 cut(s)	20, 476, 541, 1028
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188III	TCNNGA	4 cut(s)	355, 622, 737, 1097
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	4 cut(s)	283, 353, 356, 617
HpyAV	CCTTC	3 cut(s)	502, 916, 1108
HpyCH4III	ACNGT	2 cut(s)	322, 390
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	9 cut(s)	87, 239, 779, 842, 904, 909, 959, 973, 1106
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 248, 251, 687
HpyF3I	CTNAG	3 cut(s)	197, 455, 1053
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	351
HspAI	GCGC	2 cut(s)	61, 617
KspI	CCGCGG	1 cut(s)	255
Kzo9I	GATC	3 cut(s)	298, 484, 1018
LmnI	GCTCC	5 cut(s)	128, 280, 325, 540, 695
Lsp1109I	GCAGC	5 cut(s)	251, 254, 471, 943, 1130
LweI	GCATC	2 cut(s)	665, 790
MaeI	CTAG	2 cut(s)	95, 296
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	2 cut(s)	211, 650
MalI	GATC	3 cut(s)	300, 486, 1020
MboI	GATC	3 cut(s)	298, 484, 1018
MboII	GAAGA	3 cut(s)	105, 1037, 1043
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	3 cut(s)	198, 330, 645
MluCI	AATT	7 cut(s)	67, 140, 234, 774, 1041, 1078, 1083
MlyI	GAGTC	2 cut(s)	317, 722
MmeI	TCCRAC	3 cut(s)	157, 690, 832
MslI	CAYNNNNRTG	2 cut(s)	968, 1101
MspA1I	CMGCKG	2 cut(s)	254, 462
MspI	CCGG	1 cut(s)	604
MspR9I	CCNGG	2 cut(s)	887, 1004
MunI	CAATTG	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	963
MvaI	CCWGG	2 cut(s)	887, 1004
MvnI	CGCG	4 cut(s)	61, 254, 617, 763
MwoI	GCNNNNNNNGC	4 cut(s)	236, 248, 251, 687
NdeII	GATC	3 cut(s)	298, 484, 1018
NlaIV	GGNNCC	3 cut(s)	124, 392, 416
NmeAIII	GCCGAG	1 cut(s)	199
NmuCI	GTSAC	2 cut(s)	211, 650
NspI	RCATGY	1 cut(s)	791
PagI	TCATGA	1 cut(s)	1096
PciI	ACATGT	1 cut(s)	787
PctI	GAATGC	1 cut(s)	963
PfeI	GAWTC	5 cut(s)	269, 432, 535, 625, 935
Pfl23II	CGTACG	1 cut(s)	225
PflFI	GACNNNGTC	1 cut(s)	350
PkrI	GCNGC	8 cut(s)	241, 244, 253, 380, 443, 461, 958, 1120
PleI	GAGTC	2 cut(s)	316, 722
PpsI	GAGTC	2 cut(s)	316, 722
PscI	ACATGT	1 cut(s)	787
Psp6I	CCWGG	2 cut(s)	885, 1002
PspGI	CCWGG	2 cut(s)	885, 1002
PspLI	CGTACG	1 cut(s)	225
PspN4I	GGNNCC	3 cut(s)	124, 392, 416
PspPI	GGNCC	4 cut(s)	390, 606, 828, 883
PstI	CTGCAG	1 cut(s)	961
PstNI	CAGNNNCTG	1 cut(s)	956
PsuI	RGATCY	1 cut(s)	298
PsyI	GACNNNGTC	1 cut(s)	350
RsaI	GTAC	4 cut(s)	227, 422, 491, 668
RsaNI	GTAC	4 cut(s)	226, 421, 490, 667
RseI	CAYNNNNRTG	2 cut(s)	968, 1101
Rsr2I	CGGWCCG	1 cut(s)	606
RsrII	CGGWCCG	1 cut(s)	606
SacII	CCGCGG	1 cut(s)	255
SatI	GCNGC	8 cut(s)	240, 243, 252, 379, 442, 460, 957, 1119
Sau3AI	GATC	3 cut(s)	298, 484, 1018
Sau96I	GGNCC	4 cut(s)	390, 606, 828, 883
SchI	GAGTC	2 cut(s)	317, 722
ScrFI	CCNGG	2 cut(s)	887, 1004
SduI	GDGCHC	3 cut(s)	198, 330, 645
SfaNI	GCATC	2 cut(s)	665, 790
SfcI	CTRYAG	1 cut(s)	957
Sfr303I	CCGCGG	1 cut(s)	255
SgrBI	CCGCGG	1 cut(s)	255
SinI	GGWCC	3 cut(s)	390, 606, 828
SmiMI	CAYNNNNRTG	2 cut(s)	968, 1101
SmlI	CTYRAG	1 cut(s)	735
SmoI	CTYRAG	1 cut(s)	735
Sse9I	AATT	7 cut(s)	67, 140, 234, 774, 1041, 1078, 1083
SspMI	CTAG	2 cut(s)	95, 296
StyD4I	CCNGG	2 cut(s)	885, 1002
StyI	CCWWGG	1 cut(s)	1133
TaaI	ACNGT	2 cut(s)	322, 390
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	2 cut(s)	426, 772
TasI	AATT	7 cut(s)	67, 140, 234, 774, 1041, 1078, 1083
TauI	GCSGC	3 cut(s)	254, 381, 444
TfiI	GAWTC	5 cut(s)	269, 432, 535, 625, 935
TseFI	GTSAC	2 cut(s)	211, 650
TseI	GCWGC	5 cut(s)	239, 242, 459, 956, 1118
Tsp45I	GTSAC	2 cut(s)	211, 650
TspDTI	ATGAA	5 cut(s)	17, 133, 380, 626, 935
TspGWI	ACGGA	2 cut(s)	267, 477
Tth111I	GACNNNGTC	1 cut(s)	350
VpaK11BI	GGWCC	3 cut(s)	390, 606, 828
XapI	RAATTY	3 cut(s)	67, 1041, 1078
XceI	RCATGY	1 cut(s)	791
XspI	CTAG	2 cut(s)	95, 296
ZraI	GACGTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.