Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032184.1

Orthogroup ID

OG0005805

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1476

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032184.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 587 bp

gcgcagcccaaataacaatttctccgatatccgacccggaagcgacgtcgtattaatcaatcgtccacctctatccgaaatgaaaaccccctttgcctccacaactcaccatactggcatactccactctcttgcttcgcgccaaaattctccaatggcgacctgcaaaaccctagtccacacttctctctcttcaatcggctccattctccgaccccaattcattcctctcctcaatctccgcttctcccctctcctttgccccaacaaagggctcagagtttccaatgtcacttctcggccgtacgcttcaattgcagcagcagaagccgcggacttcacagacgaagctgctccgtcgccagccgaaaccctagatccatccgagtcacaagacaccgtggagcacctcctcacgcaccgagacgacgtcgtgaagtttatgaaaatggaacgccgccctctacggtccccactcggaggcgataggtggttcccgtacctcgacagattcaactgcggcggtgcttacctcagcagcggtgagatactggaagcggttgatccgtacattatggatgtgagga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002128 GO:0002938 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008757 GO:0009020 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0106050 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

195

Amino Acids

21.53

Weight (kDa)

6.65

Isoelectric Point (pI)

60.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15390 AT5G15390
fragaria_vesca	FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560
malus_domestica	MD07G1179900.v1.1 MD11G1144500.v1.1 MD17G1055800.v1.1
prunus_persica	Prupe.3G259900_v2.0.a1
pyrus_communis	pycom17g05470
rosa_chinensis	RchiOBHm_Chr2g0166661
rosa_laevigata	RLG00000021639
rosa_multiflora	Rmu_co8387427.1_g000001 Rmu_sc0005279.1_g000001 Rmu_sc0016352.1_g000001 Rmu_sc0032184.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084320 Rroxscaffold_2G00084630
rosa_rugosa	Rorug02G0524700 Rorug02G0524800
rosa_samantha	Rh2AG591100 Rh2BG602900 Rh2CG573800 Rh2DG613700 Rh4DG034600
rosa_wichuraiana	Rw2G049230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	49, 433
Acc36I	ACCTGC	1 cut(s)	171
AccII	CGCG	2 cut(s)	140, 333
AciI	CCGC	8 cut(s)	242, 331, 333, 458, 520, 523, 541, 558
AclWI	GGATC	2 cut(s)	372, 558
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	146
AcyI	GRCGYC	2 cut(s)	46, 430
AfaI	GTAC	3 cut(s)	306, 501, 570
AfiI	CCNNNNNNNGG	3 cut(s)	270, 271, 480
AgsI	TTSAA	3 cut(s)	196, 313, 515
AluBI	AGCT	1 cut(s)	351
AluI	AGCT	1 cut(s)	351
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	2 cut(s)	372, 558
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	5 cut(s)	4, 318, 321, 351, 538
ApoI	RAATTY	1 cut(s)	146
ArsI	GACNNNNNNTTYG	2 cut(s)	160, 192
AseI	ATTAAT	1 cut(s)	54
AspLEI	GCGC	2 cut(s)	4, 142
AspS9I	GGNCC	1 cut(s)	469
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	99, 555
AvaII	GGWCC	1 cut(s)	469
BanII	GRGCYC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	409
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	5 cut(s)	16, 330, 333, 338, 550
BccI	CCATC	1 cut(s)	389
BceAI	ACGGC	1 cut(s)	287
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	2 cut(s)	174, 375
BfuAI	ACCTGC	1 cut(s)	171
BisI	GCNGC	8 cut(s)	5, 319, 322, 331, 352, 458, 521, 539
BlsI	GCNGC	8 cut(s)	6, 320, 323, 332, 353, 459, 522, 540
Bme1390I	CCNGG	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	3 cut(s)	203, 471, 495
BmrFI	CCNGG	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	534
BpuMI	CCSGG	1 cut(s)	37
BsaHI	GRCGYC	2 cut(s)	46, 430
BsaJI	CCNNGG	2 cut(s)	331, 400
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	3 cut(s)	270, 271, 480
Bse1I	ACTGG	2 cut(s)	119, 556
BseDI	CCNNGG	2 cut(s)	331, 400
BseGI	GGATG	2 cut(s)	381, 584
BseLI	CCNNNNNNNGG	3 cut(s)	270, 271, 480
BseMII	CTCAG	2 cut(s)	290, 548
BseNI	ACTGG	2 cut(s)	119, 556
BseRI	GAGGAG	2 cut(s)	222, 402
BseX3I	CGGCCG	1 cut(s)	300
BseXI	GCAGC	5 cut(s)	16, 330, 333, 338, 550
Bsh1236I	CGCG	2 cut(s)	140, 333
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	1 cut(s)	302
BsiEI	CGRYCG	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	409
BsiSI	CCGG	1 cut(s)	37
BsiWI	CGTACG	1 cut(s)	304
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	3 cut(s)	270, 271, 480
BsmAI	GTCTC	1 cut(s)	418
BsmBI	CGTCTC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	277, 409
Bsp143I	GATC	2 cut(s)	377, 563
BspACI	CCGC	8 cut(s)	242, 331, 333, 458, 520, 523, 541, 558
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	2 cut(s)	289, 547
BspFNI	CGCG	2 cut(s)	140, 333
BspLI	GGNNCC	3 cut(s)	203, 471, 495
BspMI	ACCTGC	1 cut(s)	171
BspPI	GGATC	2 cut(s)	372, 558
BsrI	ACTGG	2 cut(s)	119, 556
BssECI	CCNNGG	2 cut(s)	331, 400
BssMI	GATC	2 cut(s)	377, 563
BssNI	GRCGYC	2 cut(s)	46, 430
Bst4CI	ACNGT	2 cut(s)	401, 469
Bst6I	CTCTTC	1 cut(s)	197
BstACI	GRCGYC	2 cut(s)	46, 430
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	276, 534
BstDSI	CCRYGG	2 cut(s)	331, 400
BstF5I	GGATG	2 cut(s)	381, 584
BstFNI	CGCG	2 cut(s)	140, 333
BstHHI	GCGC	2 cut(s)	4, 142
BstKTI	GATC	2 cut(s)	380, 566
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	2 cut(s)	377, 563
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	3 cut(s)	315, 327, 330
BstSCI	CCNGG	1 cut(s)	35
BstUI	CGCG	2 cut(s)	140, 333
BstV1I	GCAGC	5 cut(s)	16, 330, 333, 338, 550
BstX2I	RGATCY	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	377
BstZI	CGGCCG	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	302
BtgI	CCRYGG	2 cut(s)	331, 400
BtsCI	GGATG	2 cut(s)	381, 584
BveI	ACCTGC	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	364
CfoI	GCGC	2 cut(s)	4, 142
Cfr13I	GGNCC	1 cut(s)	469
Cfr42I	CCGCGG	1 cut(s)	334
Csp6I	GTAC	3 cut(s)	305, 500, 569
CviJI	RGCY	7 cut(s)	7, 202, 275, 302, 330, 351, 366
CviKI_1	RGCY	7 cut(s)	7, 202, 275, 302, 330, 351, 366
CviQI	GTAC	3 cut(s)	305, 500, 569
DdeI	CTNAG	2 cut(s)	276, 534
DpnI	GATC	2 cut(s)	379, 565
DpnII	GATC	2 cut(s)	377, 563
EaeI	YGGCCR	1 cut(s)	300
EagI	CGGCCG	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
EclXI	CGGCCG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	277
Eco32I	GATATC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	469
Eco52I	CGGCCG	1 cut(s)	300
EcoRV	GATATC	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	277
Esp3I	CGTCTC	1 cut(s)	418
FaiI	YATR	4 cut(s)	112, 120, 444, 576
FaqI	GGGAC	1 cut(s)	455
Fnu4HI	GCNGC	8 cut(s)	5, 319, 322, 331, 352, 458, 521, 539
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	8 cut(s)	5, 319, 322, 331, 352, 458, 521, 539
FspBI	CTAG	2 cut(s)	174, 375
GlaI	GCGC	2 cut(s)	3, 141
GluI	GCNGC	8 cut(s)	5, 319, 322, 331, 352, 458, 521, 539
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	1 cut(s)	37
HhaI	GCGC	2 cut(s)	4, 142
Hin1I	GRCGYC	2 cut(s)	46, 430
Hin6I	GCGC	2 cut(s)	2, 140
HinP1I	GCGC	2 cut(s)	2, 140
HinfI	GANTC	2 cut(s)	387, 511
HpaII	CCGG	1 cut(s)	37
HphI	GGTGA	2 cut(s)	99, 555
Hpy166II	GTNNAC	2 cut(s)	66, 179
Hpy188I	TCNGA	7 cut(s)	26, 33, 77, 213, 279, 386, 480
Hpy188III	TCNNGA	1 cut(s)	434
Hpy8I	GTNNAC	2 cut(s)	66, 179
Hpy99I	CGWCG	5 cut(s)	48, 51, 362, 432, 435
HpyCH4III	ACNGT	2 cut(s)	401, 469
HpyCH4IV	ACGT	2 cut(s)	46, 430
HpyCH4V	TGCA	2 cut(s)	166, 318
HpyF10VI	GCNNNNNNNGC	3 cut(s)	315, 327, 330
HpyF3I	CTNAG	2 cut(s)	276, 534
HpySE526I	ACGT	2 cut(s)	46, 430
Hsp92I	GRCGYC	2 cut(s)	46, 430
HspAI	GCGC	2 cut(s)	2, 140
KspI	CCGCGG	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	377, 563
LmnI	GCTCC	3 cut(s)	207, 359, 404
LpnPI	CCDG	5 cut(s)	50, 100, 176, 376, 537
Lsp1109I	GCAGC	5 cut(s)	16, 330, 333, 338, 550
MaeI	CTAG	2 cut(s)	174, 375
MaeII	ACGT	2 cut(s)	46, 430
MaeIII	GTNAC	2 cut(s)	290, 388
MalI	GATC	2 cut(s)	379, 565
MboI	GATC	2 cut(s)	377, 563
MboII	GAAGA	1 cut(s)	184
MfeI	CAATTG	1 cut(s)	313
MflI	RGATCY	1 cut(s)	377
MhlI	GDGCHC	2 cut(s)	277, 409
MluCI	AATT	4 cut(s)	17, 146, 219, 313
MlyI	GAGTC	1 cut(s)	396
MmeI	TCCRAC	2 cut(s)	56, 236
MseI	TTAA	1 cut(s)	54
MspA1I	CMGCKG	2 cut(s)	333, 541
MspI	CCGG	1 cut(s)	37
MspR9I	CCNGG	1 cut(s)	37
MunI	CAATTG	1 cut(s)	313
MvnI	CGCG	2 cut(s)	140, 333
MwoI	GCNNNNNNNGC	3 cut(s)	315, 327, 330
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	2 cut(s)	377, 563
NlaIV	GGNNCC	3 cut(s)	203, 471, 495
NmeAIII	GCCGAG	1 cut(s)	278
NmuCI	GTSAC	2 cut(s)	290, 388
PfeI	GAWTC	1 cut(s)	511
Pfl23II	CGTACG	1 cut(s)	304
PflFI	GACNNNGTC	1 cut(s)	429
PkrI	GCNGC	8 cut(s)	6, 320, 323, 332, 353, 459, 522, 540
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
PshBI	ATTAAT	1 cut(s)	54
PspLI	CGTACG	1 cut(s)	304
PspN4I	GGNNCC	3 cut(s)	203, 471, 495
PspPI	GGNCC	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	377
PsyI	GACNNNGTC	1 cut(s)	429
RsaI	GTAC	3 cut(s)	306, 501, 570
RsaNI	GTAC	3 cut(s)	305, 500, 569
SacII	CCGCGG	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	8 cut(s)	5, 319, 322, 331, 352, 458, 521, 539
Sau3AI	GATC	2 cut(s)	377, 563
Sau96I	GGNCC	1 cut(s)	469
SchI	GAGTC	1 cut(s)	396
ScrFI	CCNGG	1 cut(s)	37
SduI	GDGCHC	2 cut(s)	277, 409
SetI	ASST	9 cut(s)	49, 71, 165, 353, 412, 433, 492, 505, 535
Sfr303I	CCGCGG	1 cut(s)	334
SgrBI	CCGCGG	1 cut(s)	334
SinI	GGWCC	1 cut(s)	469
Sse9I	AATT	4 cut(s)	17, 146, 219, 313
SsiI	CCGC	8 cut(s)	242, 331, 333, 458, 520, 523, 541, 558
SspMI	CTAG	2 cut(s)	174, 375
StyD4I	CCNGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	401, 469
TaiI	ACGT	2 cut(s)	49, 433
TaqI	TCGA	1 cut(s)	505
TasI	AATT	4 cut(s)	17, 146, 219, 313
TauI	GCSGC	3 cut(s)	333, 460, 523
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseFI	GTSAC	2 cut(s)	290, 388
TseI	GCWGC	5 cut(s)	4, 318, 321, 351, 538
Tsp45I	GTSAC	2 cut(s)	290, 388
TspDTI	ATGAA	3 cut(s)	96, 212, 459
TspGWI	ACGGA	2 cut(s)	346, 556
Tth111I	GACNNNGTC	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	469
VspI	ATTAAT	1 cut(s)	54
XapI	RAATTY	1 cut(s)	146
XspI	CTAG	2 cut(s)	174, 375
ZraI	GACGTC	2 cut(s)	47, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.