Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005805

Physical Location & Seq

Genomic Coordinates Forward (+)

4416454 .. 4419111

Gene Structure 2658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1055800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAGCGCCTGCAAAACCCTAGTCCGTACATCTCTCTCCTCAATCACCTCCACCCTCCGAACCAATCGACCCACCGTCTCTCTCCTCCACTCCCCCTCCCTCCGCTTCTCTCCGCTTCCTCCCAACCAAGCGCTCAGGCTTGCTCCGTACAATGTTCCTTCGCGGCCGTACGCTTCAATTTCATCCGAAGCAGCCGCCGCAGATTTCACAGACGAAGCTCACTCCGCGGACTCAACCCTAGAACCGCCGGAGAACCCGACGCAGGACACCGTGGAGGAGCTTCTGAGGAAGAAAAACGACGTCGCGCGCCTGATGAAAATGGAACGCCGCCACGAGTCCGCGCACCAAACCGGCGGTCGGTGGTTCCCATATCTCGACAAGTTCAGCTGCGGTGAAGGTGCTTTTCTCAACAGCGGTGAGGTGCTTGAAGCGGTGGATCCGTACATAATGGATGTGAGGAAGGAGAAGTTTAGGAAAGTGGTGAAGAATCGGAGCTACGGGGTGTGTCTGGTGGTTGAAGGATTGGGAGATTTCGGCAATGTATCCGCGGCGTTTCGATCTGCGGATGCGCTCGGGTTTCAGTCGGTTCATGTGGTATCCTGCGACTCCAAAAGATATAGAGACAATCGCCATGTCAGTATGGGAGCGGAGAAATGGTTGGACATTGAAATTTGGAACTCTACTGCTGAGTGCTTTGAAGTTCTGACATCGCGAGGGTATCGAATTGCCACAACGCATTTGGGAACGGACTCGGTGTCTATATACGACATGGATTGGTCTTGCCCAACTGCGATTGTAGTCGGAAATGAAAATAGGGGAATAAGTGATGAGGCCCTCGCTTTGTCAGATTTGCATTGCAGTATTCCGATGAAAGGCATGGTCGACTCTTTCAATGTTTCAGTTGCTGCAGGCCTTCTCATGCACCATGCAGTTTGTGATAGAACATCTCGCCTGGGTAGCCATGGGGATCTGACATTTGAAGAGAGCCAAATTCTACTCGCTGAATTCTCTCTGCGGCATAGCAAGAGTTCAATGAGCATCGCACGCGAGTATGTAAAGCGGAAGGCATCTCTGCTCACGTCAAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002128 GO:0002938 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008757 GO:0009020 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0106050 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

364

Amino Acids

40.16

Weight (kDa)

6.64

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SpoU_methylase	PF00588	168 - 308	6.5e-35	SpoU rRNA Methylase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15390 AT5G15390
fragaria_vesca	FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560
malus_domestica	MD07G1179900.v1.1 MD11G1144500.v1.1 MD17G1055800.v1.1
prunus_persica	Prupe.3G259900_v2.0.a1
pyrus_communis	pycom17g05470
rosa_chinensis	RchiOBHm_Chr2g0166661
rosa_laevigata	RLG00000021639
rosa_multiflora	Rmu_co8387427.1_g000001 Rmu_sc0005279.1_g000001 Rmu_sc0016352.1_g000001 Rmu_sc0032184.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084320 Rroxscaffold_2G00084630
rosa_rugosa	Rorug02G0524700 Rorug02G0524800
rosa_samantha	Rh2AG591100 Rh2BG602900 Rh2CG573800 Rh2DG613700 Rh4DG034600
rosa_wichuraiana	Rw2G049230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	303
AccBSI	CCGCTC	1 cut(s)	647
AccI	GTMKAC	1 cut(s)	882
AccII	CGCG	8 cut(s)	163, 227, 305, 307, 341, 548, 712, 1047
AclWI	GGATC	3 cut(s)	431, 444, 975
AcoI	YGGCCR	1 cut(s)	164
AcsI	RAATTY	3 cut(s)	669, 990, 1004
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	4 cut(s)	28, 149, 170, 443
AfeI	AGCGCT	1 cut(s)	132
AfiI	CCNNNNNNNGG	3 cut(s)	262, 357, 872
AgsI	TTSAA	8 cut(s)	177, 428, 518, 668, 698, 892, 980, 1032
AhdI	GACNNNNNGTC	2 cut(s)	74, 754
AjiI	CACGTC	1 cut(s)	1080
AjnI	CCWGG	1 cut(s)	951
AluBI	AGCT	4 cut(s)	218, 280, 387, 495
AluI	AGCT	4 cut(s)	218, 280, 387, 495
Alw26I	GTCTC	2 cut(s)	82, 615
AlwI	GGATC	3 cut(s)	431, 444, 975
AlwNI	CAGNNNCTG	1 cut(s)	905
Ama87I	CYCGRG	1 cut(s)	572
Aor51HI	AGCGCT	1 cut(s)	132
AoxI	GGCC	3 cut(s)	164, 831, 910
ApeKI	GCWGC	3 cut(s)	191, 387, 905
ApoI	RAATTY	3 cut(s)	669, 990, 1004
ArsI	GACNNNNNNTTYG	3 cut(s)	38, 340, 372
AspLEI	GCGC	6 cut(s)	8, 133, 307, 309, 343, 571
AspS9I	GGNCC	1 cut(s)	832
AsuHPI	GGTGA	4 cut(s)	37, 404, 428, 493
AvaI	CYCGRG	1 cut(s)	572
BamHI	GGATCC	1 cut(s)	436
BauI	CACGAG	1 cut(s)	332
BbvI	GCAGC	3 cut(s)	203, 374, 892
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	953
BciVI	GTATCC	2 cut(s)	553, 607
BcoDI	GTCTC	2 cut(s)	82, 615
BfaI	CTAG	2 cut(s)	20, 239
BfmI	CTRYAG	1 cut(s)	906
BfoI	RGCGCY	2 cut(s)	9, 134
BfuI	GTATCC	2 cut(s)	553, 607
BisI	GCNGC	9 cut(s)	164, 192, 195, 198, 328, 388, 549, 906, 1016
BlsI	GCNGC	9 cut(s)	165, 193, 196, 199, 329, 389, 550, 907, 1017
Bme1390I	CCNGG	1 cut(s)	953
BmeRI	GACNNNNNGTC	2 cut(s)	74, 754
BmeT110I	CYCGRG	1 cut(s)	572
BmgBI	CACGTC	1 cut(s)	1080
BmgT120I	GGNCC	1 cut(s)	832
BmiI	GGNNCC	2 cut(s)	365, 438
BmrFI	CCNGG	1 cut(s)	953
BmsI	GCATC	3 cut(s)	556, 1047, 1076
Bpu10I	CCTNAGC	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	300
BsaJI	CCNNGG	5 cut(s)	225, 270, 546, 952, 961
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 641, 671
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 357, 872
Bse118I	RCCGGY	1 cut(s)	350
Bse3DI	GCAATG	2 cut(s)	544, 853
BseBI	CCWGG	1 cut(s)	953
BseDI	CCNNGG	5 cut(s)	225, 270, 546, 952, 961
BseGI	GGATG	3 cut(s)	182, 457, 571
BseLI	CCNNNNNNNGG	3 cut(s)	262, 357, 872
BseMI	GCAATG	2 cut(s)	544, 853
BseMII	CTCAG	3 cut(s)	148, 275, 678
BsePI	GCGCGC	1 cut(s)	305
BseRI	GAGGAG	3 cut(s)	28, 74, 290
BseX3I	CGGCCG	1 cut(s)	164
BseXI	GCAGC	3 cut(s)	203, 374, 892
Bsh1236I	CGCG	8 cut(s)	163, 227, 305, 307, 341, 548, 712, 1047
Bsh1285I	CGRYCG	2 cut(s)	167, 358
BshFI	GGCC	3 cut(s)	166, 833, 912
BsiEI	CGRYCG	2 cut(s)	167, 358
BsiHKCI	CYCGRG	1 cut(s)	572
BsiSI	CCGG	2 cut(s)	248, 351
BsiWI	CGTACG	1 cut(s)	168
BslI	CCNNNNNNNGG	3 cut(s)	262, 357, 872
BsmAI	GTCTC	2 cut(s)	82, 615
BsmBI	CGTCTC	1 cut(s)	82
BsnI	GGCC	3 cut(s)	166, 833, 912
BsoBI	CYCGRG	1 cut(s)	572
Bsp143I	GATC	3 cut(s)	436, 557, 967
Bsp19I	CCATGG	1 cut(s)	961
Bsp68I	TCGCGA	1 cut(s)	712
BspANI	GGCC	3 cut(s)	166, 833, 912
BspCNI	CTCAG	3 cut(s)	147, 276, 679
BspFNI	CGCG	8 cut(s)	163, 227, 305, 307, 341, 548, 712, 1047
BspLI	GGNNCC	2 cut(s)	365, 438
BspMAI	CTGCAG	1 cut(s)	910
BspPI	GGATC	3 cut(s)	431, 444, 975
BsrBI	CCGCTC	1 cut(s)	647
BsrDI	GCAATG	2 cut(s)	544, 853
BsrFI	RCCGGY	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	5 cut(s)	225, 270, 546, 952, 961
BssHII	GCGCGC	1 cut(s)	305
BssMI	GATC	3 cut(s)	436, 557, 967
BssNI	GRCGYC	1 cut(s)	300
BssSI	CACGAG	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	961
Bst2BI	CACGAG	1 cut(s)	332
Bst2UI	CCWGG	1 cut(s)	953
Bst4CI	ACNGT	2 cut(s)	76, 271
Bst6I	CTCTTC	1 cut(s)	975
BstACI	GRCGYC	1 cut(s)	300
BstC8I	GCNNGC	5 cut(s)	10, 141, 307, 910, 1045
BstDEI	CTNAG	3 cut(s)	134, 284, 687
BstDSI	CCRYGG	4 cut(s)	225, 270, 546, 961
BstF5I	GGATG	3 cut(s)	182, 457, 571
BstFNI	CGCG	8 cut(s)	163, 227, 305, 307, 341, 548, 712, 1047
BstH2I	RGCGCY	2 cut(s)	9, 134
BstHHI	GCGC	6 cut(s)	8, 133, 307, 309, 343, 571
BstKTI	GATC	3 cut(s)	439, 560, 970
BstMAI	GTCTC	2 cut(s)	82, 615
BstMBI	GATC	3 cut(s)	436, 557, 967
BstMCI	CGRYCG	2 cut(s)	167, 358
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 224, 957, 1044
BstNI	CCWGG	1 cut(s)	953
BstSCI	CCNGG	1 cut(s)	951
BstSFI	CTRYAG	1 cut(s)	906
BstUI	CGCG	8 cut(s)	163, 227, 305, 307, 341, 548, 712, 1047
BstV1I	GCAGC	3 cut(s)	203, 374, 892
BstX2I	RGATCY	2 cut(s)	436, 967
BstYI	RGATCY	2 cut(s)	436, 967
BstZI	CGGCCG	1 cut(s)	164
BsuI	GTATCC	2 cut(s)	553, 607
BsuRI	GGCC	3 cut(s)	166, 833, 912
BtgI	CCRYGG	4 cut(s)	225, 270, 546, 961
BtgZI	GCGATG	2 cut(s)	693, 1024
BtrI	CACGTC	1 cut(s)	1080
BtsCI	GGATG	3 cut(s)	182, 457, 571
BtuMI	TCGCGA	1 cut(s)	712
Cac8I	GCNNGC	5 cut(s)	10, 141, 307, 910, 1045
CaiI	CAGNNNCTG	1 cut(s)	905
CfoI	GCGC	6 cut(s)	8, 133, 307, 309, 343, 571
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	832
Cfr42I	CCGCGG	2 cut(s)	228, 549
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	4 cut(s)	27, 148, 169, 442
CviAII	CATG	7 cut(s)	590, 632, 769, 877, 919, 926, 962
CviQI	GTAC	4 cut(s)	27, 148, 169, 442
DdeI	CTNAG	3 cut(s)	134, 284, 687
DpnI	GATC	3 cut(s)	438, 559, 969
DpnII	GATC	3 cut(s)	436, 557, 967
DriI	GACNNNNNGTC	2 cut(s)	74, 754
EaeI	YGGCCR	1 cut(s)	164
EagI	CGGCCG	1 cut(s)	164
Eam1104I	CTCTTC	1 cut(s)	975
Eam1105I	GACNNNNNGTC	2 cut(s)	74, 754
EarI	CTCTTC	1 cut(s)	975
EclXI	CGGCCG	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	961
Eco147I	AGGCCT	1 cut(s)	912
Eco47III	AGCGCT	1 cut(s)	132
Eco52I	CGGCCG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	832
EcoRI	GAATTC	1 cut(s)	1004
EcoRII	CCWGG	1 cut(s)	951
EcoT14I	CCWWGG	1 cut(s)	961
ErhI	CCWWGG	1 cut(s)	961
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	7 cut(s)	593, 635, 772, 880, 922, 929, 965
FatI	CATG	7 cut(s)	589, 631, 768, 876, 918, 925, 961
FblI	GTMKAC	1 cut(s)	882
Fnu4HI	GCNGC	9 cut(s)	164, 192, 195, 198, 328, 388, 549, 906, 1016
FokI	GGATG	3 cut(s)	169, 464, 578
Fsp4HI	GCNGC	9 cut(s)	164, 192, 195, 198, 328, 388, 549, 906, 1016
FspBI	CTAG	2 cut(s)	20, 239
GlaI	GCGC	6 cut(s)	7, 132, 306, 308, 342, 570
GluI	GCNGC	9 cut(s)	164, 192, 195, 198, 328, 388, 549, 906, 1016
HaeII	RGCGCY	2 cut(s)	9, 134
HaeIII	GGCC	3 cut(s)	166, 833, 912
HapII	CCGG	2 cut(s)	248, 351
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	6 cut(s)	8, 133, 307, 309, 343, 571
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	7 cut(s)	593, 635, 772, 880, 922, 929, 965
Hin6I	GCGC	6 cut(s)	6, 131, 305, 307, 341, 569
HinP1I	GCGC	6 cut(s)	6, 131, 305, 307, 341, 569
HincII	GTYRAC	1 cut(s)	883
HindII	GTYRAC	1 cut(s)	883
HinfI	GANTC	6 cut(s)	230, 335, 487, 605, 749, 884
HpaII	CCGG	2 cut(s)	248, 351
HphI	GGTGA	4 cut(s)	37, 404, 428, 493
Hpy166II	GTNNAC	1 cut(s)	883
Hpy188I	TCNGA	9 cut(s)	59, 187, 285, 492, 705, 803, 847, 867, 972
Hpy188III	TCNNGA	2 cut(s)	374, 711
Hpy8I	GTNNAC	1 cut(s)	883
Hpy99I	CGWCG	3 cut(s)	262, 302, 305
HpyAV	CCTTC	6 cut(s)	168, 389, 454, 512, 923, 1057
HpyCH4III	ACNGT	2 cut(s)	76, 271
HpyCH4IV	ACGT	2 cut(s)	300, 1079
HpyCH4V	TGCA	6 cut(s)	12, 853, 858, 908, 922, 929
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 224, 957, 1044
HpyF3I	CTNAG	3 cut(s)	134, 284, 687
HpySE526I	ACGT	2 cut(s)	300, 1079
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	7 cut(s)	593, 635, 772, 880, 922, 929, 965
HspAI	GCGC	6 cut(s)	6, 131, 305, 307, 341, 569
KspI	CCGCGG	2 cut(s)	228, 549
Kzo9I	GATC	3 cut(s)	436, 557, 967
LmnI	GCTCC	4 cut(s)	148, 277, 492, 644
Lsp1109I	GCAGC	3 cut(s)	203, 374, 892
LweI	GCATC	3 cut(s)	556, 1047, 1076
MaeI	CTAG	2 cut(s)	20, 239
MaeII	ACGT	2 cut(s)	300, 1079
MalI	GATC	3 cut(s)	438, 559, 969
MbiI	CCGCTC	1 cut(s)	647
MboI	GATC	3 cut(s)	436, 557, 967
MboII	GAAGA	3 cut(s)	301, 496, 992
MflI	RGATCY	2 cut(s)	436, 967
MluCI	AATT	5 cut(s)	177, 669, 723, 990, 1004
MlyI	GAGTC	5 cut(s)	224, 344, 599, 743, 878
MmeI	TCCRAC	2 cut(s)	639, 781
MspA1I	CMGCKG	4 cut(s)	227, 387, 414, 548
MspI	CCGG	2 cut(s)	248, 351
MspR9I	CCNGG	1 cut(s)	953
MvaI	CCWGG	1 cut(s)	953
MvnI	CGCG	8 cut(s)	163, 227, 305, 307, 341, 548, 712, 1047
MwoI	GCNNNNNNNGC	4 cut(s)	197, 224, 957, 1044
NcoI	CCATGG	1 cut(s)	961
NdeII	GATC	3 cut(s)	436, 557, 967
NlaIII	CATG	7 cut(s)	593, 635, 772, 880, 922, 929, 965
NlaIV	GGNNCC	2 cut(s)	365, 438
NruI	TCGCGA	1 cut(s)	712
PauI	GCGCGC	1 cut(s)	305
PceI	AGGCCT	1 cut(s)	912
PfeI	GAWTC	1 cut(s)	487
Pfl23II	CGTACG	1 cut(s)	168
PkrI	GCNGC	9 cut(s)	165, 193, 196, 199, 329, 389, 550, 907, 1017
PleI	GAGTC	5 cut(s)	224, 343, 599, 743, 878
PpsI	GAGTC	5 cut(s)	224, 343, 599, 743, 878
Psp6I	CCWGG	1 cut(s)	951
PspGI	CCWGG	1 cut(s)	951
PspLI	CGTACG	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	365, 438
PspPI	GGNCC	1 cut(s)	832
PstI	CTGCAG	1 cut(s)	910
PstNI	CAGNNNCTG	1 cut(s)	905
PsuI	RGATCY	2 cut(s)	436, 967
PteI	GCGCGC	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	387
RruI	TCGCGA	1 cut(s)	712
RsaI	GTAC	4 cut(s)	28, 149, 170, 443
RsaNI	GTAC	4 cut(s)	27, 148, 169, 442
SacII	CCGCGG	2 cut(s)	228, 549
SalI	GTCGAC	1 cut(s)	881
SatI	GCNGC	9 cut(s)	164, 192, 195, 198, 328, 388, 549, 906, 1016
Sau3AI	GATC	3 cut(s)	436, 557, 967
Sau96I	GGNCC	1 cut(s)	832
SchI	GAGTC	5 cut(s)	224, 344, 599, 743, 878
ScrFI	CCNGG	1 cut(s)	953
SetI	ASST	9 cut(s)	50, 220, 282, 303, 389, 400, 423, 497, 1082
SfaNI	GCATC	3 cut(s)	556, 1047, 1076
SfcI	CTRYAG	1 cut(s)	906
Sfr303I	CCGCGG	2 cut(s)	228, 549
SgrBI	CCGCGG	2 cut(s)	228, 549
Sse9I	AATT	5 cut(s)	177, 669, 723, 990, 1004
SseBI	AGGCCT	1 cut(s)	912
SspMI	CTAG	2 cut(s)	20, 239
StuI	AGGCCT	1 cut(s)	912
StyD4I	CCNGG	1 cut(s)	951
StyI	CCWWGG	1 cut(s)	961
TaaI	ACNGT	2 cut(s)	76, 271
TaiI	ACGT	2 cut(s)	303, 1082
TaqI	TCGA	5 cut(s)	67, 375, 556, 721, 882
TasI	AATT	5 cut(s)	177, 669, 723, 990, 1004
TauI	GCSGC	6 cut(s)	166, 197, 200, 330, 551, 1018
TfiI	GAWTC	1 cut(s)	487
TseI	GCWGC	3 cut(s)	191, 387, 905
TspDTI	ATGAA	5 cut(s)	171, 329, 578, 822, 884
TspGWI	ACGGA	4 cut(s)	14, 135, 429, 761
XapI	RAATTY	3 cut(s)	669, 990, 1004
XcmI	CCANNNNNNNNNTGG	1 cut(s)	736
XmiI	GTMKAC	1 cut(s)	882
XspI	CTAG	2 cut(s)	20, 239
ZraI	GACGTC	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.