Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016352.1

Orthogroup ID

OG0005805

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2840

Gene Structure 2840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016352.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 940 bp

ggattcctttgttgatcgccatgtacggctaccaaatcccggagtctggcaaccttatggtccaggtcatcatgctccagtgcataatttggtatactgctctgttgctcttcctcttcgagtatcgcgactgcaagctgctaataatggagcaattcccggagaccgcaaccttcatcttctccttcaagggctcagagtttccaatgtcacttctcggccgtacgcttcaattgcagcagcagaagccgcggacttcacagacgaatctgctccgtcgccagccgaaaccctagatccatccgagtcgcaagacaccgtggagcacctcctcacgcaccgagacgacgtcgtgaagtttatgaaaatggaacgccgccctttacggtccccactcggaggcgataggtggttcccgtacctcaacagattcaactgcggcggtgcttacctcagcagcggtgagatactggaagcggttgatccgtacattatggatgtgaggaaggagaggtttaggaatgtggtgaggaatcggagctactcggtgtgcttggtggtggagggattgggagatttcggaaatgtatcggcggtgttccggtccgccgacgcgctcgggattcagtcggttcatgtgctctcttgtgacgcatccaaaaggtacagagaaaatcgccatgtcagcatgggagcagagaaatggttggatattgaactttgggactccactcaagagtgctttgaggttctaacatcgcgtggttatcgaattgccacaacacatgtggggatggatgcggtaattgtccccttcttttcctcctgtggaatttgtttgcatgaaaaatttgttgaaaactgtagttatgaattccgggaactcaccctgatccaaaaggtttcaaatgtagccttttttctgcattcaagtgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002128 GO:0002938 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008757 GO:0009020 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0106050 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

312

Amino Acids

34.96

Weight (kDa)

6.07

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15390 AT5G15390
fragaria_vesca	FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560
malus_domestica	MD07G1179900.v1.1 MD11G1144500.v1.1 MD17G1055800.v1.1
prunus_persica	Prupe.3G259900_v2.0.a1
pyrus_communis	pycom17g05470
rosa_chinensis	RchiOBHm_Chr2g0166661
rosa_laevigata	RLG00000021639
rosa_multiflora	Rmu_co8387427.1_g000001 Rmu_sc0005279.1_g000001 Rmu_sc0016352.1_g000001 Rmu_sc0032184.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084320 Rroxscaffold_2G00084630
rosa_rugosa	Rorug02G0524700 Rorug02G0524800
rosa_samantha	Rh2AG591100 Rh2BG602900 Rh2CG573800 Rh2DG613700 Rh4DG034600
rosa_wichuraiana	Rw2G049230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	94
AccII	CGCG	4 cut(s)	128, 252, 615, 761
AclWI	GGATC	3 cut(s)	291, 477, 887
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	3 cut(s)	832, 849, 873
AcyI	GRCGYC	1 cut(s)	349
AfaI	GTAC	5 cut(s)	25, 225, 420, 489, 666
AfiI	CCNNNNNNNGG	3 cut(s)	39, 46, 399
AflIII	ACRYGT	1 cut(s)	785
AgsI	TTSAA	7 cut(s)	189, 232, 434, 717, 858, 907, 931
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	2 cut(s)	138, 541
AluI	AGCT	2 cut(s)	138, 541
Alw21I	GWGCWC	2 cut(s)	328, 643
Alw26I	GTCTC	2 cut(s)	157, 337
AlwI	GGATC	3 cut(s)	291, 477, 887
Ama87I	CYCGRG	1 cut(s)	618
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	4 cut(s)	138, 237, 240, 457
ApoI	RAATTY	3 cut(s)	832, 849, 873
AspLEI	GCGC	1 cut(s)	617
AspS9I	GGNCC	3 cut(s)	60, 388, 604
AsuC2I	CCSGG	3 cut(s)	40, 160, 879
AsuHPI	GGTGA	3 cut(s)	474, 539, 878
AvaI	CYCGRG	1 cut(s)	618
AvaII	GGWCC	3 cut(s)	60, 388, 604
BanII	GRGCYC	1 cut(s)	196
Bbv12I	GWGCWC	2 cut(s)	328, 643
BbvCI	CCTCAGC	1 cut(s)	453
BbvI	GCAGC	4 cut(s)	125, 249, 252, 469
BccI	CCATC	2 cut(s)	308, 788
BceAI	ACGGC	2 cut(s)	42, 206
BciT130I	CCWGG	1 cut(s)	64
BcnI	CCSGG	3 cut(s)	40, 160, 879
BcoDI	GTCTC	2 cut(s)	157, 337
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	863
BisI	GCNGC	7 cut(s)	139, 238, 241, 250, 377, 440, 458
BlsI	GCNGC	7 cut(s)	140, 239, 242, 251, 378, 441, 459
Bme1390I	CCNGG	4 cut(s)	40, 64, 160, 879
Bme18I	GGWCC	3 cut(s)	60, 388, 604
BmeT110I	CYCGRG	1 cut(s)	618
BmgT120I	GGNCC	3 cut(s)	60, 388, 604
BmiI	GGNNCC	2 cut(s)	390, 414
BmrFI	CCNGG	4 cut(s)	40, 64, 160, 879
BmsI	GCATC	2 cut(s)	663, 788
BpmI	CTGGAG	1 cut(s)	61
Bpu10I	CCTNAGC	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	718
BpuMI	CCSGG	3 cut(s)	40, 160, 879
BsaHI	GRCGYC	1 cut(s)	349
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	250, 319
BsaWI	WCCGGW	1 cut(s)	601
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 46, 399
Bse1I	ACTGG	2 cut(s)	78, 475
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	250, 319
BseGI	GGATG	5 cut(s)	300, 503, 654, 799, 803
BseLI	CCNNNNNNNGG	3 cut(s)	39, 46, 399
BseMII	CTCAG	2 cut(s)	209, 467
BseNI	ACTGG	2 cut(s)	78, 475
BseRI	GAGGAG	1 cut(s)	321
BseX3I	CGGCCG	1 cut(s)	219
BseXI	GCAGC	4 cut(s)	125, 249, 252, 469
Bsh1236I	CGCG	4 cut(s)	128, 252, 615, 761
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	222
BsiHKAI	GWGCWC	2 cut(s)	328, 643
BsiHKCI	CYCGRG	1 cut(s)	618
BsiSI	CCGG	4 cut(s)	40, 160, 602, 878
BsiWI	CGTACG	1 cut(s)	223
BslFI	GGGAC	3 cut(s)	374, 738, 795
BslI	CCNNNNNNNGG	3 cut(s)	39, 46, 399
BsmAI	GTCTC	2 cut(s)	157, 337
BsmBI	CGTCTC	1 cut(s)	337
BsmFI	GGGAC	3 cut(s)	374, 738, 795
BsmI	GAATGC	1 cut(s)	926
BsnI	GGCC	1 cut(s)	221
Bso31I	GGTCTC	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	618
Bsp1286I	GDGCHC	3 cut(s)	196, 328, 643
Bsp143I	GATC	4 cut(s)	14, 296, 482, 892
Bsp68I	TCGCGA	1 cut(s)	128
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	2 cut(s)	208, 466
BspFNI	CGCG	4 cut(s)	128, 252, 615, 761
BspLI	GGNNCC	2 cut(s)	390, 414
BspPI	GGATC	3 cut(s)	291, 477, 887
BspQI	GCTCTTC	1 cut(s)	115
BspTNI	GGTCTC	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	78, 475
BssECI	CCNNGG	2 cut(s)	250, 319
BssMI	GATC	4 cut(s)	14, 296, 482, 892
BssNAI	GTATAC	1 cut(s)	95
BssNI	GRCGYC	1 cut(s)	349
Bst1107I	GTATAC	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	3 cut(s)	320, 388, 864
Bst6I	CTCTTC	2 cut(s)	115, 121
BstACI	GRCGYC	1 cut(s)	349
BstC8I	GCNNGC	2 cut(s)	136, 283
BstDEI	CTNAG	2 cut(s)	195, 453
BstDSI	CCRYGG	2 cut(s)	250, 319
BstF5I	GGATG	5 cut(s)	300, 503, 654, 799, 803
BstFNI	CGCG	4 cut(s)	128, 252, 615, 761
BstHHI	GCGC	1 cut(s)	617
BstKTI	GATC	4 cut(s)	17, 299, 485, 895
BstMAI	GTCTC	2 cut(s)	157, 337
BstMBI	GATC	4 cut(s)	14, 296, 482, 892
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	4 cut(s)	234, 246, 249, 685
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	789
BstSCI	CCNGG	4 cut(s)	38, 62, 158, 877
BstSFI	CTRYAG	1 cut(s)	863
BstUI	CGCG	4 cut(s)	128, 252, 615, 761
BstV1I	GCAGC	4 cut(s)	125, 249, 252, 469
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BstZ17I	GTATAC	1 cut(s)	95
BstZI	CGGCCG	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	221
BtgI	CCRYGG	2 cut(s)	250, 319
BtgZI	GCGATG	1 cut(s)	742
BtsCI	GGATG	5 cut(s)	300, 503, 654, 799, 803
BtsIMutI	CAGTG	1 cut(s)	85
BtuMI	TCGCGA	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	136, 283
CfoI	GCGC	1 cut(s)	617
Cfr13I	GGNCC	3 cut(s)	60, 388, 604
Cfr42I	CCGCGG	1 cut(s)	253
CpoI	CGGWCCG	1 cut(s)	604
CseI	GACGC	2 cut(s)	621, 660
Csp6I	GTAC	5 cut(s)	24, 224, 419, 488, 665
CspCI	CAANNNNNGTGG	2 cut(s)	769, 804
CspI	CGGWCCG	1 cut(s)	604
CviAII	CATG	7 cut(s)	21, 72, 636, 681, 689, 786, 843
CviJI	RGCY	8 cut(s)	29, 138, 194, 221, 249, 285, 541, 915
CviKI_1	RGCY	8 cut(s)	29, 138, 194, 221, 249, 285, 541, 915
CviQI	GTAC	5 cut(s)	24, 224, 419, 488, 665
DdeI	CTNAG	2 cut(s)	195, 453
DpnI	GATC	4 cut(s)	16, 298, 484, 894
DpnII	GATC	4 cut(s)	14, 296, 482, 892
EaeI	YGGCCR	1 cut(s)	219
EagI	CGGCCG	1 cut(s)	219
Eam1104I	CTCTTC	2 cut(s)	115, 121
EarI	CTCTTC	2 cut(s)	115, 121
EciI	GGCGGA	1 cut(s)	596
EclXI	CGGCCG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	157
Eco47I	GGWCC	3 cut(s)	60, 388, 604
Eco52I	CGGCCG	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	618
EcoRI	GAATTC	1 cut(s)	873
EcoRII	CCWGG	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	196
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	7 cut(s)	24, 75, 639, 684, 692, 789, 846
FaqI	GGGAC	3 cut(s)	374, 738, 795
FatI	CATG	7 cut(s)	20, 71, 635, 680, 688, 785, 842
FblI	GTMKAC	1 cut(s)	94
Fnu4HI	GCNGC	7 cut(s)	139, 238, 241, 250, 377, 440, 458
FokI	GGATG	5 cut(s)	287, 510, 641, 806, 810
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	7 cut(s)	139, 238, 241, 250, 377, 440, 458
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	1 cut(s)	616
GluI	GCNGC	7 cut(s)	139, 238, 241, 250, 377, 440, 458
GsuI	CTGGAG	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	4 cut(s)	40, 160, 602, 878
HgaI	GACGC	2 cut(s)	621, 660
HhaI	GCGC	1 cut(s)	617
Hin1I	GRCGYC	1 cut(s)	349
Hin1II	CATG	7 cut(s)	24, 75, 639, 684, 692, 789, 846
Hin6I	GCGC	1 cut(s)	615
HinP1I	GCGC	1 cut(s)	615
HinfI	GANTC	8 cut(s)	3, 43, 267, 306, 430, 533, 623, 726
HpaII	CCGG	4 cut(s)	40, 160, 602, 878
HphI	GGTGA	3 cut(s)	474, 539, 878
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	5 cut(s)	198, 305, 399, 538, 582
Hpy188III	TCNNGA	4 cut(s)	127, 353, 620, 735
Hpy8I	GTNNAC	1 cut(s)	95
Hpy99I	CGWCG	4 cut(s)	281, 351, 354, 615
HpyAV	CCTTC	4 cut(s)	183, 195, 500, 824
HpyCH4III	ACNGT	3 cut(s)	320, 388, 864
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	5 cut(s)	83, 134, 237, 842, 926
HpyF10VI	GCNNNNNNNGC	4 cut(s)	234, 246, 249, 685
HpyF3I	CTNAG	2 cut(s)	195, 453
HpySE526I	ACGT	1 cut(s)	349
Hsp92I	GRCGYC	1 cut(s)	349
Hsp92II	CATG	7 cut(s)	24, 75, 639, 684, 692, 789, 846
HspAI	GCGC	1 cut(s)	615
KspI	CCGCGG	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	14, 296, 482, 892
LguI	GCTCTTC	1 cut(s)	115
LmnI	GCTCC	6 cut(s)	80, 150, 278, 323, 538, 693
Lsp1109I	GCAGC	4 cut(s)	125, 249, 252, 469
LweI	GCATC	2 cut(s)	663, 788
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	2 cut(s)	209, 648
MalI	GATC	4 cut(s)	16, 298, 484, 894
MboI	GATC	4 cut(s)	14, 296, 482, 892
MboII	GAAGA	3 cut(s)	102, 108, 171
MfeI	CAATTG	1 cut(s)	232
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	3 cut(s)	196, 328, 643
MluCI	AATT	8 cut(s)	86, 154, 232, 772, 805, 832, 849, 873
MlyI	GAGTC	3 cut(s)	52, 315, 720
MmeI	TCCRAC	1 cut(s)	688
MslI	CAYNNNNRTG	1 cut(s)	931
MspA1I	CMGCKG	2 cut(s)	252, 460
MspI	CCGG	4 cut(s)	40, 160, 602, 878
MspR9I	CCNGG	4 cut(s)	40, 64, 160, 879
MunI	CAATTG	1 cut(s)	232
Mva1269I	GAATGC	1 cut(s)	926
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	4 cut(s)	128, 252, 615, 761
MwoI	GCNNNNNNNGC	4 cut(s)	234, 246, 249, 685
NciI	CCSGG	3 cut(s)	40, 160, 879
NdeII	GATC	4 cut(s)	14, 296, 482, 892
NlaIII	CATG	7 cut(s)	24, 75, 639, 684, 692, 789, 846
NlaIV	GGNNCC	2 cut(s)	390, 414
NmeAIII	GCCGAG	1 cut(s)	197
NmuCI	GTSAC	2 cut(s)	209, 648
NruI	TCGCGA	1 cut(s)	128
NspI	RCATGY	1 cut(s)	789
PciI	ACATGT	1 cut(s)	785
PciSI	GCTCTTC	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PctI	GAATGC	1 cut(s)	926
PfeI	GAWTC	5 cut(s)	3, 267, 430, 533, 623
Pfl23II	CGTACG	1 cut(s)	223
PflFI	GACNNNGTC	1 cut(s)	348
PfoI	TCCNGGA	3 cut(s)	38, 158, 877
PkrI	GCNGC	7 cut(s)	140, 239, 242, 251, 378, 441, 459
PleI	GAGTC	3 cut(s)	51, 314, 720
PpsI	GAGTC	3 cut(s)	51, 314, 720
PscI	ACATGT	1 cut(s)	785
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspLI	CGTACG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	390, 414
PspPI	GGNCC	3 cut(s)	60, 388, 604
PsuI	RGATCY	1 cut(s)	296
PsyI	GACNNNGTC	1 cut(s)	348
RruI	TCGCGA	1 cut(s)	128
RsaI	GTAC	5 cut(s)	25, 225, 420, 489, 666
RsaNI	GTAC	5 cut(s)	24, 224, 419, 488, 665
RseI	CAYNNNNRTG	1 cut(s)	931
Rsr2I	CGGWCCG	1 cut(s)	604
RsrII	CGGWCCG	1 cut(s)	604
SacII	CCGCGG	1 cut(s)	253
SapI	GCTCTTC	1 cut(s)	115
SatI	GCNGC	7 cut(s)	139, 238, 241, 250, 377, 440, 458
Sau3AI	GATC	4 cut(s)	14, 296, 482, 892
Sau96I	GGNCC	3 cut(s)	60, 388, 604
SchI	GAGTC	3 cut(s)	52, 315, 720
ScrFI	CCNGG	4 cut(s)	40, 64, 160, 879
SduI	GDGCHC	3 cut(s)	196, 328, 643
SfaNI	GCATC	2 cut(s)	663, 788
SfcI	CTRYAG	1 cut(s)	863
Sfr303I	CCGCGG	1 cut(s)	253
SgrBI	CCGCGG	1 cut(s)	253
SinI	GGWCC	3 cut(s)	60, 388, 604
SmiMI	CAYNNNNRTG	1 cut(s)	931
SmlI	CTYRAG	1 cut(s)	733
SmoI	CTYRAG	1 cut(s)	733
Sse9I	AATT	8 cut(s)	86, 154, 232, 772, 805, 832, 849, 873
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	4 cut(s)	38, 62, 158, 877
TaaI	ACNGT	3 cut(s)	320, 388, 864
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	2 cut(s)	119, 770
TasI	AATT	8 cut(s)	86, 154, 232, 772, 805, 832, 849, 873
TauI	GCSGC	3 cut(s)	252, 379, 442
TfiI	GAWTC	5 cut(s)	3, 267, 430, 533, 623
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	2 cut(s)	209, 648
TseI	GCWGC	4 cut(s)	138, 237, 240, 457
Tsp45I	GTSAC	2 cut(s)	209, 648
TspDTI	ATGAA	5 cut(s)	165, 378, 624, 859, 886
TspGWI	ACGGA	2 cut(s)	265, 475
TspRI	CASTG	1 cut(s)	85
Tth111I	GACNNNGTC	1 cut(s)	348
VpaK11BI	GGWCC	3 cut(s)	60, 388, 604
XapI	RAATTY	3 cut(s)	832, 849, 873
XceI	RCATGY	1 cut(s)	789
XcmI	CCANNNNNNNNNTGG	1 cut(s)	785
XmiI	GTMKAC	1 cut(s)	94
XspI	CTAG	1 cut(s)	294
ZraI	GACGTC	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.