Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005805

Physical Location & Seq

Genomic Coordinates Forward (+)

6813819 .. 6816880

Gene Structure 3062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00084320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCGACCTGCAAAACCCTAGTCCACACGTCTCTCTCTTCAATCGGCTCCATTCTCCGACCCCAATTCATTCCTCTCCTCAATCTCCGCTTCTCCCCTCTCCTTTGGCCCAACAAAGGGCTCAGAGTTTCCAATGTCACTTCTCGTCCGTACGCTTCAATTGCAGCAGCAGAAGCCGCGGACTTCACAGACGAAGCTGCTCCGTCCCCAAACGAAACCCTAGATCCATCCGAGTCACAAGACACCGTGGAGCACCTCCTCACGCACCGAGACGACGTCGTGAAGTTTATGAAAATGGAACGCCGGCCTTTACGGTCCCCACTCGGAGGCGATAGGTGGTTCCCGTACCTCGACAGATTCAACTGCGGCGGTGCTTACCTCAGCAGCGGTGAGATACTGGAAGCGGTTGATCCGTACATCATGGATGTGAGGAAAGAGAGGTTTAGGAATGTGGTGAGGAATCGGAGCTACTCGGTGTGCTTGGTGGTGGAGGGATTGGGAGATTTTGGAAATGTATCGGCGGTGTTCCGCTCCGCCGACGCGCTCGGGATTCAGTCGGTTCATGTGCTCTCTTGTGACGCGTCCAAAAGATACAGAGAAAATCGCCATGTCAGCATGGGAGCAGAGAAATGGTTGGATATTGAACTTTGGGACTCCACTCAAGAGTGCTTTGAAGTTCTAACATCACGTGGTTATCGAATTGCCACAACACATGTGGGGATGGATGCGGTGTCTATTTACGACATGGACTGGTCCTGCCCAACTGCGATAGTAGTCGGAAATGAAAATAGGGGAATAAGTGATGAGGCCCTGGATTTGTCAGATTTGCATTGCAGTATTCCAATGAAGGGCATGGTGGATTCTTTCAATGTTTCAGTTGCTGCAGGCATTCTCATGCACCATGCTGTTTGTGATAGAACTTCTCGCCTGGGTTGTCATGGTGATCTGACATCAGAAGAGAACCAAATTCTTCTTGCTGAGTTTTCTCTGCGTCATAGCAAGAATTCAATTAGCATTGCTCATGAGTATGCAAAGCGGAAGGCAGCTCTGCTCACACCAAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002128 GO:0002938 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008757 GO:0009020 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0106050 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

355

Amino Acids

39.51

Weight (kDa)

5.96

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SpoU_methylase	PF00588	159 - 300	1.2e-35	SpoU rRNA Methylase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15390 AT5G15390
fragaria_vesca	FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560
malus_domestica	MD07G1179900.v1.1 MD11G1144500.v1.1 MD17G1055800.v1.1
prunus_persica	Prupe.3G259900_v2.0.a1
pyrus_communis	pycom17g05470
rosa_chinensis	RchiOBHm_Chr2g0166661
rosa_laevigata	RLG00000021639
rosa_multiflora	Rmu_co8387427.1_g000001 Rmu_sc0005279.1_g000001 Rmu_sc0016352.1_g000001 Rmu_sc0032184.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084320 Rroxscaffold_2G00084630
rosa_rugosa	Rorug02G0524700 Rorug02G0524800
rosa_samantha	Rh2AG591100 Rh2BG602900 Rh2CG573800 Rh2DG613700 Rh4DG034600
rosa_wichuraiana	Rw2G049230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	531
AccII	CGCG	3 cut(s)	179, 542, 581
AclWI	GGATC	2 cut(s)	218, 404
AcsI	RAATTY	2 cut(s)	966, 1003
AcvI	CACGTG	1 cut(s)	689
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	3 cut(s)	152, 347, 416
AfiI	CCNNNNNNNGG	4 cut(s)	116, 117, 326, 848
AflIII	ACRYGT	3 cut(s)	27, 579, 712
AgsI	TTSAA	7 cut(s)	42, 159, 361, 644, 674, 868, 1008
AjiI	CACGTC	1 cut(s)	30
AjnI	CCWGG	2 cut(s)	810, 927
AluBI	AGCT	3 cut(s)	197, 468, 1046
AluI	AGCT	3 cut(s)	197, 468, 1046
Alw21I	GWGCWC	2 cut(s)	255, 570
Alw26I	GTCTC	2 cut(s)	36, 264
AlwI	GGATC	2 cut(s)	218, 404
AlwNI	CAGNNNCTG	1 cut(s)	881
Ama87I	CYCGRG	1 cut(s)	545
AoxI	GGCC	3 cut(s)	107, 305, 807
ApeKI	GCWGC	6 cut(s)	164, 167, 197, 384, 881, 1043
ApoI	RAATTY	2 cut(s)	966, 1003
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	4 cut(s)	108, 315, 753, 808
AsuHPI	GGTGA	3 cut(s)	401, 466, 953
AvaI	CYCGRG	1 cut(s)	545
AvaII	GGWCC	2 cut(s)	315, 753
BanII	GRGCYC	1 cut(s)	123
BbrPI	CACGTG	1 cut(s)	689
Bbv12I	GWGCWC	2 cut(s)	255, 570
BbvCI	CCTCAGC	1 cut(s)	380
BbvI	GCAGC	6 cut(s)	176, 179, 184, 396, 868, 1055
BccI	CCATC	2 cut(s)	235, 715
BciT130I	CCWGG	2 cut(s)	812, 929
BcoDI	GTCTC	2 cut(s)	36, 264
BfaI	CTAG	2 cut(s)	20, 221
BfmI	CTRYAG	1 cut(s)	882
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	8 cut(s)	165, 168, 177, 198, 367, 385, 882, 1044
BlsI	GCNGC	8 cut(s)	166, 169, 178, 199, 368, 386, 883, 1045
Bme1390I	CCNGG	2 cut(s)	812, 929
Bme18I	GGWCC	2 cut(s)	315, 753
BmeT110I	CYCGRG	1 cut(s)	545
BmgBI	CACGTC	1 cut(s)	30
BmgT120I	GGNCC	4 cut(s)	108, 315, 753, 808
BmiI	GGNNCC	3 cut(s)	49, 317, 341
BmrFI	CCNGG	2 cut(s)	812, 929
BmsI	GCATC	1 cut(s)	715
Bpu10I	CCTNAGC	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	645
BsaAI	YACGTR	1 cut(s)	689
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	5 cut(s)	177, 246, 810, 928, 1058
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 117, 326, 848
Bse118I	RCCGGY	1 cut(s)	303
Bse1I	ACTGG	2 cut(s)	402, 755
Bse3DI	GCAATG	2 cut(s)	829, 1014
BseBI	CCWGG	2 cut(s)	812, 929
BseDI	CCNNGG	5 cut(s)	177, 246, 810, 928, 1058
BseGI	GGATG	4 cut(s)	227, 430, 726, 730
BseLI	CCNNNNNNNGG	4 cut(s)	116, 117, 326, 848
BseMI	GCAATG	2 cut(s)	829, 1014
BseMII	CTCAG	3 cut(s)	136, 394, 969
BseNI	ACTGG	2 cut(s)	402, 755
BseRI	GAGGAG	2 cut(s)	68, 248
BseXI	GCAGC	6 cut(s)	176, 179, 184, 396, 868, 1055
Bsh1236I	CGCG	3 cut(s)	179, 542, 581
BshFI	GGCC	3 cut(s)	109, 307, 809
BsiHKAI	GWGCWC	2 cut(s)	255, 570
BsiHKCI	CYCGRG	1 cut(s)	545
BsiSI	CCGG	1 cut(s)	304
BsiWI	CGTACG	1 cut(s)	150
BslFI	GGGAC	3 cut(s)	190, 301, 665
BslI	CCNNNNNNNGG	4 cut(s)	116, 117, 326, 848
BsmAI	GTCTC	2 cut(s)	36, 264
BsmBI	CGTCTC	2 cut(s)	36, 264
BsmFI	GGGAC	3 cut(s)	190, 301, 665
BsmI	GAATGC	1 cut(s)	888
BsnI	GGCC	3 cut(s)	109, 307, 809
BsoBI	CYCGRG	1 cut(s)	545
Bsp1286I	GDGCHC	3 cut(s)	123, 255, 570
Bsp143I	GATC	3 cut(s)	223, 409, 943
BspANI	GGCC	3 cut(s)	109, 307, 809
BspCNI	CTCAG	3 cut(s)	135, 393, 970
BspFNI	CGCG	3 cut(s)	179, 542, 581
BspHI	TCATGA	1 cut(s)	1021
BspLI	GGNNCC	3 cut(s)	49, 317, 341
BspMAI	CTGCAG	1 cut(s)	886
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	2 cut(s)	218, 404
BsrBI	CCGCTC	1 cut(s)	531
BsrDI	GCAATG	2 cut(s)	829, 1014
BsrFI	RCCGGY	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	402, 755
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	5 cut(s)	177, 246, 810, 928, 1058
BssMI	GATC	3 cut(s)	223, 409, 943
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	1058
Bst2UI	CCWGG	2 cut(s)	812, 929
Bst4CI	ACNGT	2 cut(s)	247, 315
Bst6I	CTCTTC	2 cut(s)	43, 951
BstACI	GRCGYC	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	689
BstC8I	GCNNGC	2 cut(s)	305, 886
BstDEI	CTNAG	3 cut(s)	122, 380, 978
BstDSI	CCRYGG	2 cut(s)	177, 246
BstF5I	GGATG	4 cut(s)	227, 430, 726, 730
BstFNI	CGCG	3 cut(s)	179, 542, 581
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	3 cut(s)	226, 412, 946
BstMAI	GTCTC	2 cut(s)	36, 264
BstMBI	GATC	3 cut(s)	223, 409, 943
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 173, 176, 612
BstNI	CCWGG	2 cut(s)	812, 929
BstNSI	RCATGY	1 cut(s)	716
BstSCI	CCNGG	2 cut(s)	810, 927
BstSFI	CTRYAG	1 cut(s)	882
BstUI	CGCG	3 cut(s)	179, 542, 581
BstV1I	GCAGC	6 cut(s)	176, 179, 184, 396, 868, 1055
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	3 cut(s)	109, 307, 809
BtgI	CCRYGG	2 cut(s)	177, 246
BtrI	CACGTC	1 cut(s)	30
BtsCI	GGATG	4 cut(s)	227, 430, 726, 730
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	305, 886
CaiI	CAGNNNCTG	1 cut(s)	881
CciI	TCATGA	1 cut(s)	1021
CfoI	GCGC	1 cut(s)	544
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	4 cut(s)	108, 315, 753, 808
Cfr42I	CCGCGG	1 cut(s)	180
CseI	GACGC	4 cut(s)	548, 570, 587, 980
Csp6I	GTAC	3 cut(s)	151, 346, 415
CspCI	CAANNNNNGTGG	2 cut(s)	696, 731
CviQI	GTAC	3 cut(s)	151, 346, 415
DdeI	CTNAG	3 cut(s)	122, 380, 978
DpnI	GATC	3 cut(s)	225, 411, 945
DpnII	GATC	3 cut(s)	223, 409, 943
Eam1104I	CTCTTC	2 cut(s)	43, 951
EarI	CTCTTC	2 cut(s)	43, 951
EciI	GGCGGA	1 cut(s)	523
Eco130I	CCWWGG	1 cut(s)	1058
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	2 cut(s)	315, 753
Eco72I	CACGTG	1 cut(s)	689
Eco88I	CYCGRG	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	808
EcoRI	GAATTC	1 cut(s)	1003
EcoRII	CCWGG	2 cut(s)	810, 927
EcoT14I	CCWWGG	1 cut(s)	1058
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	1058
Esp3I	CGTCTC	2 cut(s)	36, 264
FaqI	GGGAC	3 cut(s)	190, 301, 665
Fnu4HI	GCNGC	8 cut(s)	165, 168, 177, 198, 367, 385, 882, 1044
FokI	GGATG	4 cut(s)	214, 437, 733, 737
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	8 cut(s)	165, 168, 177, 198, 367, 385, 882, 1044
FspBI	CTAG	2 cut(s)	20, 221
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	8 cut(s)	165, 168, 177, 198, 367, 385, 882, 1044
HaeIII	GGCC	3 cut(s)	109, 307, 809
HapII	CCGG	1 cut(s)	304
HgaI	GACGC	4 cut(s)	548, 570, 587, 980
HhaI	GCGC	1 cut(s)	544
Hin1I	GRCGYC	1 cut(s)	276
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HinfI	GANTC	6 cut(s)	233, 357, 460, 550, 653, 860
HpaII	CCGG	1 cut(s)	304
HphI	GGTGA	3 cut(s)	401, 466, 953
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	9 cut(s)	59, 125, 232, 326, 465, 779, 823, 948, 955
Hpy188III	TCNNGA	4 cut(s)	280, 547, 662, 1022
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	3 cut(s)	278, 281, 542
HpyAV	CCTTC	2 cut(s)	841, 1033
HpyCH4III	ACNGT	2 cut(s)	247, 315
HpyCH4IV	ACGT	3 cut(s)	29, 276, 688
HpyCH4V	TGCA	7 cut(s)	12, 164, 829, 834, 884, 898, 1031
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 173, 176, 612
HpyF3I	CTNAG	3 cut(s)	122, 380, 978
HpySE526I	ACGT	3 cut(s)	29, 276, 688
Hsp92I	GRCGYC	1 cut(s)	276
HspAI	GCGC	1 cut(s)	542
KroI	GCCGGC	1 cut(s)	303
KroNI	GCCGGC	1 cut(s)	305
KspI	CCGCGG	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	223, 409, 943
LmnI	GCTCC	6 cut(s)	53, 205, 250, 465, 536, 620
Lsp1109I	GCAGC	6 cut(s)	176, 179, 184, 396, 868, 1055
LweI	GCATC	1 cut(s)	715
MaeI	CTAG	2 cut(s)	20, 221
MaeII	ACGT	3 cut(s)	29, 276, 688
MaeIII	GTNAC	3 cut(s)	136, 234, 575
MalI	GATC	3 cut(s)	225, 411, 945
MbiI	CCGCTC	1 cut(s)	531
MboI	GATC	3 cut(s)	223, 409, 943
MboII	GAAGA	3 cut(s)	30, 962, 968
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	3 cut(s)	123, 255, 570
MluCI	AATT	6 cut(s)	65, 159, 699, 966, 1003, 1008
MluI	ACGCGT	1 cut(s)	579
MlyI	GAGTC	2 cut(s)	242, 647
MmeI	TCCRAC	3 cut(s)	82, 615, 757
MroNI	GCCGGC	1 cut(s)	303
MslI	CAYNNNNRTG	3 cut(s)	425, 893, 1026
MspA1I	CMGCKG	2 cut(s)	179, 387
MspI	CCGG	1 cut(s)	304
MspR9I	CCNGG	2 cut(s)	812, 929
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	888
MvaI	CCWGG	2 cut(s)	812, 929
MvnI	CGCG	3 cut(s)	179, 542, 581
MwoI	GCNNNNNNNGC	4 cut(s)	161, 173, 176, 612
NaeI	GCCGGC	1 cut(s)	305
NdeII	GATC	3 cut(s)	223, 409, 943
NgoMIV	GCCGGC	1 cut(s)	303
NlaIV	GGNNCC	3 cut(s)	49, 317, 341
NmuCI	GTSAC	3 cut(s)	136, 234, 575
NspI	RCATGY	1 cut(s)	716
PagI	TCATGA	1 cut(s)	1021
PciI	ACATGT	1 cut(s)	712
PcsI	WCGNNNNNNNCGW	1 cut(s)	694
PctI	GAATGC	1 cut(s)	888
PdiI	GCCGGC	1 cut(s)	305
PfeI	GAWTC	4 cut(s)	357, 460, 550, 860
Pfl23II	CGTACG	1 cut(s)	150
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	8 cut(s)	166, 169, 178, 199, 368, 386, 883, 1045
PleI	GAGTC	2 cut(s)	241, 647
PmaCI	CACGTG	1 cut(s)	689
PmlI	CACGTG	1 cut(s)	689
PpsI	GAGTC	2 cut(s)	241, 647
Ppu21I	YACGTR	1 cut(s)	689
PscI	ACATGT	1 cut(s)	712
Psp6I	CCWGG	2 cut(s)	810, 927
PspCI	CACGTG	1 cut(s)	689
PspGI	CCWGG	2 cut(s)	810, 927
PspLI	CGTACG	1 cut(s)	150
PspN4I	GGNNCC	3 cut(s)	49, 317, 341
PspPI	GGNCC	4 cut(s)	108, 315, 753, 808
PstI	CTGCAG	1 cut(s)	886
PstNI	CAGNNNCTG	1 cut(s)	881
PsuI	RGATCY	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	275
RsaI	GTAC	3 cut(s)	152, 347, 416
RsaNI	GTAC	3 cut(s)	151, 346, 415
RseI	CAYNNNNRTG	3 cut(s)	425, 893, 1026
SacII	CCGCGG	1 cut(s)	180
SatI	GCNGC	8 cut(s)	165, 168, 177, 198, 367, 385, 882, 1044
Sau3AI	GATC	3 cut(s)	223, 409, 943
Sau96I	GGNCC	4 cut(s)	108, 315, 753, 808
SchI	GAGTC	2 cut(s)	242, 647
ScrFI	CCNGG	2 cut(s)	812, 929
SduI	GDGCHC	3 cut(s)	123, 255, 570
SfaNI	GCATC	1 cut(s)	715
SfcI	CTRYAG	1 cut(s)	882
Sfr303I	CCGCGG	1 cut(s)	180
SgrBI	CCGCGG	1 cut(s)	180
SinI	GGWCC	2 cut(s)	315, 753
SmiMI	CAYNNNNRTG	3 cut(s)	425, 893, 1026
SmlI	CTYRAG	1 cut(s)	660
SmoI	CTYRAG	1 cut(s)	660
Sse9I	AATT	6 cut(s)	65, 159, 699, 966, 1003, 1008
SspMI	CTAG	2 cut(s)	20, 221
StyD4I	CCNGG	2 cut(s)	810, 927
StyI	CCWWGG	1 cut(s)	1058
TaaI	ACNGT	2 cut(s)	247, 315
TaiI	ACGT	3 cut(s)	32, 279, 691
TaqI	TCGA	2 cut(s)	351, 697
TasI	AATT	6 cut(s)	65, 159, 699, 966, 1003, 1008
TauI	GCSGC	2 cut(s)	179, 369
TfiI	GAWTC	4 cut(s)	357, 460, 550, 860
TseFI	GTSAC	3 cut(s)	136, 234, 575
TseI	GCWGC	6 cut(s)	164, 167, 197, 384, 881, 1043
Tsp45I	GTSAC	3 cut(s)	136, 234, 575
TspDTI	ATGAA	5 cut(s)	58, 305, 551, 798, 860
TspGWI	ACGGA	3 cut(s)	138, 192, 402
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	2 cut(s)	315, 753
XapI	RAATTY	2 cut(s)	966, 1003
XceI	RCATGY	1 cut(s)	716
XcmI	CCANNNNNNNNNTGG	1 cut(s)	712
XspI	CTAG	2 cut(s)	20, 221
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.