MD08G1122800.v1.1

Rap1-interacting factor 1 N terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0006378
Physical Location & Seq
Forward (+)
11336424 .. 11336990
567 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1122800.v1.1.491

Sequence Viewer

Length: 279 bp
ATGATATATCATCCGTCCATCGTCGCCGAAATCGCAGCGGATGATGTCAAATTTGTTTTAGATTCACTGGCAAAGCTCATTACAACCACGAAAATGAAGTCTGTTTGCAATTTAGGGGTGTGGTGCATATCTATCCAACAATTGAGTACACCACTTTTAGCTGCCCATTTCCATTCTCTTTTGCTTGCGATTGTTCATGCCATTGACAATCCTATCGGTTCTTTGTCGACTACTTTTGAGGCTATTCAGGTAATACATCGCAAGTATCATGCGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04550 map04550
Pfam Domains
Protein Families
Rif1_N

Protein Analysis

93

Amino Acids

10.14

Weight (kDa)

7.0

Isoelectric Point (pI)

19.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rif1_N PF12231 1 - 87 3e-11 Rap1-interacting factor 1 N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 227
AciI CCGC 1 cut(s) 38
AcsI RAATTY 1 cut(s) 50
AfaI GTAC 1 cut(s) 148
AluBI AGCT 2 cut(s) 76, 161
AluI AGCT 2 cut(s) 76, 161
ApeKI GCWGC 2 cut(s) 35, 161
ApoI RAATTY 1 cut(s) 50
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
BbvI GCAGC 2 cut(s) 47, 148
BccI CCATC 1 cut(s) 26
BisI GCNGC 2 cut(s) 36, 162
BlsI GCNGC 2 cut(s) 37, 163
Bse1I ACTGG 1 cut(s) 72
BseGI GGATG 2 cut(s) 10, 46
BseNI ACTGG 1 cut(s) 72
BseXI GCAGC 2 cut(s) 47, 148
BspACI CCGC 1 cut(s) 38
BsrI ACTGG 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 186
BstF5I GGATG 2 cut(s) 10, 46
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 47, 148
BtgZI GCGATG 1 cut(s) 242
BtsCI GGATG 2 cut(s) 10, 46
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 147
CviAII CATG 2 cut(s) 197, 269
CviJI RGCY 3 cut(s) 76, 161, 242
CviKI_1 RGCY 3 cut(s) 76, 161, 242
CviQI GTAC 1 cut(s) 147
FaeI CATG 2 cut(s) 200, 272
FaiI YATR 4 cut(s) 7, 128, 198, 270
FatI CATG 2 cut(s) 196, 268
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 2 cut(s) 36, 162
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 2 cut(s) 36, 162
GluI GCNGC 2 cut(s) 36, 162
Hin1II CATG 2 cut(s) 200, 272
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 1 cut(s) 62
Hpy166II GTNNAC 2 cut(s) 149, 228
Hpy8I GTNNAC 2 cut(s) 149, 228
Hpy99I CGWCG 1 cut(s) 26
HpyCH4V TGCA 2 cut(s) 108, 126
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
Hsp92II CATG 2 cut(s) 200, 272
LpnPI CCDG 2 cut(s) 53, 233
Lsp1109I GCAGC 2 cut(s) 47, 148
MfeI CAATTG 1 cut(s) 140
MluCI AATT 3 cut(s) 50, 109, 140
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 1 cut(s) 232
MseI TTAA 1 cut(s) 277
MslI CAYNNNNRTG 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 38
MunI CAATTG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 32
NlaIII CATG 2 cut(s) 200, 272
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 37, 163
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 92
SalI GTCGAC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 277
SatI GCNGC 2 cut(s) 36, 162
SetI ASST 3 cut(s) 78, 163, 252
SgeI CNNG 6 cut(s) 80, 100, 197, 209, 260, 274
SmiMI CAYNNNNRTG 1 cut(s) 92
Sse9I AATT 3 cut(s) 50, 109, 140
SsiI CCGC 1 cut(s) 38
TaqI TCGA 1 cut(s) 227
TasI AATT 3 cut(s) 50, 109, 140
TatI WGTACW 1 cut(s) 146
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 277
Tru9I TTAA 1 cut(s) 277
TscAI CASTG 1 cut(s) 72
TseI GCWGC 2 cut(s) 35, 161
TspDTI ATGAA 2 cut(s) 110, 185
TspRI CASTG 1 cut(s) 72
XapI RAATTY 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.