Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006378

Physical Location & Seq

Genomic Coordinates Reverse (-)

56641083 .. 56642747

Gene Structure 1665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0477300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCCATCGCCGCAACAACCACCAATCAGTAACAGCCACGTCAACCTCCCCGAAACCCCCAACAACAAGCTCCCGATCGTACCCGATCTCCTCCTCTCCGCCCTCTCCGTCTTTTTCCTCTTCTCCTCCTCCTCCTCCTCCTCCAAAATCACCCTCCTCCCCAAAACCCCACTCTTCAATTTCCCATCCTACCCTCGCCGATTCGTCAAAATCCCCACAATGTCGCTCCACCACCACCGGAACTTCGCCACGCCGCAATCGCTCTCCGATTGGCTCAAGCCGCGCCTCCGCTCCGACTCGCTCGCCTCGTGGGGCGTGAAGCCGGGGACCAAGAACGTCCACAACCTCTGGCTCGAGCTCTCCGAAGGCGAAAGCTCCCTAGCCGACTCGACCCCGCCGGTTCGGACCGTCCACGTCGTCACGGTTCGGGTCATCGGCGCTCAAAACCGGGTCTTGGTCGAAGCCGAGCAACAGTTATCGGACGGCAGCGTCAGGAGCCGGGGGAGGCCCCTGTCGGAGAAGATGAAGCCCGGCGAGGACCCCATGTCGGCGGCGAACCGGGCCGTGTTGGAAGAGCTCGGGTCGATACTAAACGGGTCGGGTCAAGACGGCATTGTGAAGATTGTACCCGGTTCGTATGGCAAGAAGGTGGAGGAGCGGAGCTCGGCGTCGTATCCGGGGTTGCCGGCGTGTTACGAGCTGCATTCGGTGGATGCTACGGTGGAGGGCTTGCCGGAGGAGGATTTCGTGACGGAGGAGGAGCATGAGTATGCCGATTCCGGCGAGACAAGTGTTGCTCATGAGGCTGTGTCTGTCAAGAAGCATTTCTGGAAATGGGTTAGTCTTGATTCGATAAACCATGAGCCTATTCGAAATGTAATGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Rif1_N

Protein Analysis

295

Amino Acids

32.5

Weight (kDa)

6.13

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006378)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02590 FvH4_1g02590 FvH4_1g02590
malus_domestica	MD08G1122800.v1.1 MD15G1166600.v1.1 MD15G1167400.v1.1
prunus_persica	Prupe.7G248700_v2.0.a1 Prupe.7G248700_v2.0.a1 Prupe.7G248700_v2.0.a1
pyrus_communis	pycom15g14880 pycom15g14920
rosa_chinensis	RchiOBHm_Chr2g0087621
rosa_laevigata	RLG00000015887
rosa_multiflora	Rmu_co8050730.1_g000001 Rmu_sc0002299.1_g000035 Rmu_sc0026063.1_g000001 Rmu_sc0026064.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153360
rosa_rugosa	Rorug01G0477200 Rorug01G0477300 Rorug01G0477400 Rorug01G0477500
rosa_samantha	Rh2AG031000 Rh2BG030500 Rh2CG030900 Rh2DG030800
rosa_wichuraiana	Rw2G002440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	488
AccBSI	CCGCTC	2 cut(s)	291, 658
AccII	CGCG	1 cut(s)	283
AciI	CCGC	8 cut(s)	11, 99, 254, 281, 289, 395, 551, 658
AcyI	GRCGYC	1 cut(s)	668
AfaI	GTAC	2 cut(s)	81, 627
AfiI	CCNNNNNNNGG	2 cut(s)	454, 547
AgsI	TTSAA	1 cut(s)	178
AhdI	GACNNNNNGTC	1 cut(s)	544
AjiI	CACGTC	2 cut(s)	40, 415
AluBI	AGCT	6 cut(s)	70, 358, 375, 577, 663, 700
AluI	AGCT	6 cut(s)	70, 358, 375, 577, 663, 700
Alw21I	GWGCWC	3 cut(s)	360, 579, 665
Alw26I	GTCTC	1 cut(s)	779
Ama87I	CYCGRG	2 cut(s)	353, 578
AoxI	GGCC	2 cut(s)	506, 561
ApeKI	GCWGC	2 cut(s)	486, 700
Asp700I	GAANNNNTTC	1 cut(s)	824
AspLEI	GCGC	2 cut(s)	285, 440
AspS9I	GGNCC	5 cut(s)	327, 405, 507, 538, 561
AsuC2I	CCSGG	7 cut(s)	324, 449, 500, 531, 560, 630, 678
AsuHPI	GGTGA	1 cut(s)	142
AsuII	TTCGAA	1 cut(s)	871
AvaI	CYCGRG	2 cut(s)	353, 578
AvaII	GGWCC	3 cut(s)	327, 405, 538
BanII	GRGCYC	3 cut(s)	360, 579, 665
BauI	CACGAG	1 cut(s)	307
Bbv12I	GWGCWC	3 cut(s)	360, 579, 665
BbvI	GCAGC	2 cut(s)	498, 687
BccI	CCATC	2 cut(s)	13, 193
BceAI	ACGGC	3 cut(s)	499, 548, 625
BciVI	GTATCC	1 cut(s)	684
BcnI	CCSGG	7 cut(s)	324, 449, 500, 531, 560, 630, 678
BcoDI	GTCTC	1 cut(s)	779
BfaI	CTAG	1 cut(s)	380
BfoI	RGCGCY	1 cut(s)	441
BfuI	GTATCC	1 cut(s)	684
BisI	GCNGC	6 cut(s)	11, 254, 281, 487, 552, 701
BlsI	GCNGC	6 cut(s)	12, 255, 282, 488, 553, 702
Bme1390I	CCNGG	7 cut(s)	324, 449, 500, 531, 560, 630, 678
Bme18I	GGWCC	3 cut(s)	327, 405, 538
BmeRI	GACNNNNNGTC	1 cut(s)	544
BmeT110I	CYCGRG	2 cut(s)	353, 578
BmgBI	CACGTC	2 cut(s)	40, 415
BmgT120I	GGNCC	5 cut(s)	327, 405, 507, 538, 561
BmiI	GGNNCC	4 cut(s)	328, 497, 509, 540
BmrFI	CCNGG	7 cut(s)	324, 449, 500, 531, 560, 630, 678
BmsI	GCATC	1 cut(s)	703
BplI	GAGNNNNNCTC	2 cut(s)	647, 679
Bpu14I	TTCGAA	1 cut(s)	871
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	7 cut(s)	324, 449, 500, 531, 560, 630, 678
BsaHI	GRCGYC	1 cut(s)	668
BsaJI	CCNNGG	3 cut(s)	323, 499, 677
BsaWI	WCCGGW	1 cut(s)	237
BsaXI	ACNNNNNCTCC	4 cut(s)	72, 102, 752, 782
Bsc4I	CCNNNNNNNGG	2 cut(s)	454, 547
Bse118I	RCCGGY	2 cut(s)	397, 685
BseDI	CCNNGG	3 cut(s)	323, 499, 677
BseGI	GGATG	2 cut(s)	185, 718
BseLI	CCNNNNNNNGG	2 cut(s)	454, 547
BseXI	GCAGC	2 cut(s)	498, 687
Bsh1236I	CGCG	1 cut(s)	283
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	508, 563
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	3 cut(s)	360, 579, 665
BsiHKCI	CYCGRG	2 cut(s)	353, 578
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	2 cut(s)	454, 547
BsmAI	GTCTC	1 cut(s)	779
BsmFI	GGGAC	1 cut(s)	340
BsmI	GAATGC	1 cut(s)	703
BsnI	GGCC	2 cut(s)	508, 563
BsoBI	CYCGRG	2 cut(s)	353, 578
Bsp119I	TTCGAA	1 cut(s)	871
Bsp1286I	GDGCHC	3 cut(s)	360, 579, 665
Bsp143I	GATC	2 cut(s)	75, 85
BspACI	CCGC	8 cut(s)	11, 99, 254, 281, 289, 395, 551, 658
BspANI	GGCC	2 cut(s)	508, 563
BspFNI	CGCG	1 cut(s)	283
BspHI	TCATGA	1 cut(s)	799
BspLI	GGNNCC	4 cut(s)	328, 497, 509, 540
BspQI	GCTCTTC	1 cut(s)	567
BspT104I	TTCGAA	1 cut(s)	871
BsrBI	CCGCTC	2 cut(s)	291, 658
BsrFI	RCCGGY	2 cut(s)	397, 685
BssAI	RCCGGY	2 cut(s)	397, 685
BssECI	CCNNGG	3 cut(s)	323, 499, 677
BssMI	GATC	2 cut(s)	75, 85
BssNI	GRCGYC	1 cut(s)	668
BssSI	CACGAG	1 cut(s)	307
Bst2BI	CACGAG	1 cut(s)	307
Bst4CI	ACNGT	4 cut(s)	409, 424, 474, 721
Bst6I	CTCTTC	3 cut(s)	125, 179, 567
BstACI	GRCGYC	1 cut(s)	668
BstBI	TTCGAA	1 cut(s)	871
BstC8I	GCNNGC	3 cut(s)	303, 687, 731
BstF5I	GGATG	2 cut(s)	185, 718
BstFNI	CGCG	1 cut(s)	283
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	2 cut(s)	285, 440
BstKTI	GATC	2 cut(s)	78, 88
BstMAI	GTCTC	1 cut(s)	779
BstMBI	GATC	2 cut(s)	75, 85
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 259, 280, 495, 560, 803
BstSCI	CCNGG	7 cut(s)	322, 447, 498, 529, 558, 628, 676
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	2 cut(s)	498, 687
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	2 cut(s)	508, 563
BtrI	CACGTC	2 cut(s)	40, 415
BtsCI	GGATG	2 cut(s)	185, 718
Cac8I	GCNNGC	3 cut(s)	303, 687, 731
CciI	TCATGA	1 cut(s)	799
CfoI	GCGC	2 cut(s)	285, 440
Cfr10I	RCCGGY	2 cut(s)	397, 685
Cfr13I	GGNCC	5 cut(s)	327, 405, 507, 538, 561
CpoI	CGGWCCG	1 cut(s)	405
CseI	GACGC	2 cut(s)	478, 657
Csp6I	GTAC	2 cut(s)	80, 626
CspI	CGGWCCG	1 cut(s)	405
CviAII	CATG	4 cut(s)	544, 764, 800, 860
CviQI	GTAC	2 cut(s)	80, 626
DpnI	GATC	2 cut(s)	77, 87
DpnII	GATC	2 cut(s)	75, 85
DrdI	GACNNNNNNGTC	1 cut(s)	488
DriI	GACNNNNNGTC	1 cut(s)	544
DseDI	GACNNNNNNGTC	1 cut(s)	488
Eam1104I	CTCTTC	3 cut(s)	125, 179, 567
Eam1105I	GACNNNNNGTC	1 cut(s)	544
EarI	CTCTTC	3 cut(s)	125, 179, 567
EciI	GGCGGA	1 cut(s)	88
Ecl136II	GAGCTC	3 cut(s)	358, 577, 663
Eco24I	GRGCYC	3 cut(s)	360, 579, 665
Eco47I	GGWCC	3 cut(s)	327, 405, 538
Eco53kI	GAGCTC	3 cut(s)	358, 577, 663
Eco88I	CYCGRG	2 cut(s)	353, 578
EcoICRI	GAGCTC	3 cut(s)	358, 577, 663
EcoO109I	RGGNCCY	2 cut(s)	507, 538
EcoT38I	GRGCYC	3 cut(s)	360, 579, 665
FaeI	CATG	4 cut(s)	547, 767, 803, 863
FaiI	YATR	6 cut(s)	545, 639, 765, 771, 801, 861
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	4 cut(s)	543, 763, 799, 859
FauI	CCCGC	1 cut(s)	402
Fnu4HI	GCNGC	6 cut(s)	11, 254, 281, 487, 552, 701
FokI	GGATG	2 cut(s)	172, 725
FriOI	GRGCYC	3 cut(s)	360, 579, 665
Fsp4HI	GCNGC	6 cut(s)	11, 254, 281, 487, 552, 701
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	2 cut(s)	284, 439
GluI	GCNGC	6 cut(s)	11, 254, 281, 487, 552, 701
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	508, 563
HgaI	GACGC	2 cut(s)	478, 657
HhaI	GCGC	2 cut(s)	285, 440
Hin1I	GRCGYC	1 cut(s)	668
Hin1II	CATG	4 cut(s)	547, 767, 803, 863
Hin6I	GCGC	2 cut(s)	283, 438
HinP1I	GCGC	2 cut(s)	283, 438
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	5 cut(s)	201, 296, 386, 776, 848
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	3 cut(s)	43, 340, 412
Hpy188I	TCNGA	6 cut(s)	268, 295, 364, 405, 481, 517
Hpy188III	TCNNGA	8 cut(s)	73, 493, 605, 748, 800, 817, 829, 845
Hpy8I	GTNNAC	3 cut(s)	43, 340, 412
Hpy99I	CGWCG	2 cut(s)	419, 673
HpyAV	CCTTC	2 cut(s)	359, 640
HpyCH4III	ACNGT	4 cut(s)	409, 424, 474, 721
HpyCH4IV	ACGT	3 cut(s)	39, 336, 414
HpyCH4V	TGCA	2 cut(s)	703, 883
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 259, 280, 495, 560, 803
HpySE526I	ACGT	3 cut(s)	39, 336, 414
Hsp92I	GRCGYC	1 cut(s)	668
Hsp92II	CATG	4 cut(s)	547, 767, 803, 863
HspAI	GCGC	2 cut(s)	283, 438
KroI	GCCGGC	1 cut(s)	685
KroNI	GCCGGC	1 cut(s)	687
Kzo9I	GATC	2 cut(s)	75, 85
LguI	GCTCTTC	1 cut(s)	567
LmnI	GCTCC	8 cut(s)	75, 231, 296, 380, 495, 655, 660, 760
Lsp1109I	GCAGC	2 cut(s)	498, 687
LweI	GCATC	1 cut(s)	703
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	3 cut(s)	39, 336, 414
MaeIII	GTNAC	4 cut(s)	29, 418, 692, 748
MalI	GATC	2 cut(s)	77, 87
MbiI	CCGCTC	2 cut(s)	291, 658
MboI	GATC	2 cut(s)	75, 85
MboII	GAAGA	5 cut(s)	112, 166, 532, 584, 631
MhlI	GDGCHC	3 cut(s)	360, 579, 665
MluCI	AATT	1 cut(s)	178
MlyI	GAGTC	2 cut(s)	290, 380
MmeI	TCCRAC	3 cut(s)	318, 495, 549
MroNI	GCCGGC	1 cut(s)	685
MroXI	GAANNNNTTC	1 cut(s)	824
MslI	CAYNNNNRTG	1 cut(s)	768
MspR9I	CCNGG	7 cut(s)	324, 449, 500, 531, 560, 630, 678
Mva1269I	GAATGC	1 cut(s)	703
MvnI	CGCG	1 cut(s)	283
MwoI	GCNNNNNNNGC	6 cut(s)	10, 259, 280, 495, 560, 803
NaeI	GCCGGC	1 cut(s)	687
NciI	CCSGG	7 cut(s)	324, 449, 500, 531, 560, 630, 678
NdeII	GATC	2 cut(s)	75, 85
NgoMIV	GCCGGC	1 cut(s)	685
NlaIII	CATG	4 cut(s)	547, 767, 803, 863
NlaIV	GGNNCC	4 cut(s)	328, 497, 509, 540
NmeAIII	GCCGAG	2 cut(s)	490, 644
NmuCI	GTSAC	2 cut(s)	418, 748
NspV	TTCGAA	1 cut(s)	871
PaeR7I	CTCGAG	1 cut(s)	353
PagI	TCATGA	1 cut(s)	799
PciSI	GCTCTTC	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	2 cut(s)	305, 360
PctI	GAATGC	1 cut(s)	703
PdiI	GCCGGC	1 cut(s)	687
PdmI	GAANNNNTTC	1 cut(s)	824
PfeI	GAWTC	3 cut(s)	201, 776, 848
PkrI	GCNGC	6 cut(s)	12, 255, 282, 488, 553, 702
Ple19I	CGATCG	1 cut(s)	78
PleI	GAGTC	2 cut(s)	290, 380
PpsI	GAGTC	2 cut(s)	290, 380
PpuMI	RGGWCCY	1 cut(s)	538
Psp124BI	GAGCTC	3 cut(s)	360, 579, 665
Psp5II	RGGWCCY	1 cut(s)	538
PspN4I	GGNNCC	4 cut(s)	328, 497, 509, 540
PspPI	GGNCC	5 cut(s)	327, 405, 507, 538, 561
PspPPI	RGGWCCY	1 cut(s)	538
PspXI	VCTCGAGB	1 cut(s)	353
PvuI	CGATCG	1 cut(s)	78
RsaI	GTAC	2 cut(s)	81, 627
RsaNI	GTAC	2 cut(s)	80, 626
RseI	CAYNNNNRTG	1 cut(s)	768
Rsr2I	CGGWCCG	1 cut(s)	405
RsrII	CGGWCCG	1 cut(s)	405
SacI	GAGCTC	3 cut(s)	360, 579, 665
SapI	GCTCTTC	1 cut(s)	567
SatI	GCNGC	6 cut(s)	11, 254, 281, 487, 552, 701
Sau3AI	GATC	2 cut(s)	75, 85
Sau96I	GGNCC	5 cut(s)	327, 405, 507, 538, 561
SchI	GAGTC	2 cut(s)	290, 380
ScrFI	CCNGG	7 cut(s)	324, 449, 500, 531, 560, 630, 678
SduI	GDGCHC	3 cut(s)	360, 579, 665
SfaNI	GCATC	1 cut(s)	703
Sfr274I	CTCGAG	1 cut(s)	353
SfuI	TTCGAA	1 cut(s)	871
SinI	GGWCC	3 cut(s)	327, 405, 538
SlaI	CTCGAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	768
SmlI	CTYRAG	2 cut(s)	275, 353
SmoI	CTYRAG	2 cut(s)	275, 353
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	8 cut(s)	11, 99, 254, 281, 289, 395, 551, 658
SspMI	CTAG	1 cut(s)	380
SstI	GAGCTC	3 cut(s)	360, 579, 665
StyD4I	CCNGG	7 cut(s)	322, 447, 498, 529, 558, 628, 676
TaaI	ACNGT	4 cut(s)	409, 424, 474, 721
TaiI	ACGT	3 cut(s)	42, 339, 417
TaqI	TCGA	6 cut(s)	354, 389, 459, 584, 851, 871
TasI	AATT	1 cut(s)	178
TauI	GCSGC	4 cut(s)	13, 256, 283, 554
TfiI	GAWTC	3 cut(s)	201, 776, 848
TseFI	GTSAC	2 cut(s)	418, 748
TseI	GCWGC	2 cut(s)	486, 700
Tsp45I	GTSAC	2 cut(s)	418, 748
TspDTI	ATGAA	1 cut(s)	539
TspGWI	ACGGA	2 cut(s)	97, 767
VpaK11BI	GGWCC	3 cut(s)	327, 405, 538
XhoI	CTCGAG	1 cut(s)	353
XmnI	GAANNNNTTC	1 cut(s)	824
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.