Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026064.1

Orthogroup ID

OG0006378

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 998

Gene Structure 998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026064.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgtcgaatctctcagagcagctccaagaaatcaaatccctaatttcttcacccaccaaatcaaacaagtcactcgcttactccactctatcacaccttcaacaacagtcctccgatgctctgattcaaacactcgcgctgagctctcagagccttctccgttggatcgtcgccgatattcaagacgacgacgaagaaattgcggcgcaggcattgaaatgtttgggttttatgatataccatccggccattgtttccgaaatttcagtggaggatgtgaagttggttttggaatcattggttaaactcattacaactacgaaaattaagtcggtttgtaatttgggagtgtggtgcatatctatacaacagctgagtgaaccacttttggctccccatttccattctcttttgcgcgcagtagttcatgccattgacaatcccattggttctctgtcaacaacttttgaggctattcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Rif1_N

Protein Analysis

160

Amino Acids

17.55

Weight (kDa)

5.22

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006378)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02590 FvH4_1g02590 FvH4_1g02590
malus_domestica	MD08G1122800.v1.1 MD15G1166600.v1.1 MD15G1167400.v1.1
prunus_persica	Prupe.7G248700_v2.0.a1 Prupe.7G248700_v2.0.a1 Prupe.7G248700_v2.0.a1
pyrus_communis	pycom15g14880 pycom15g14920
rosa_chinensis	RchiOBHm_Chr2g0087621
rosa_laevigata	RLG00000015887
rosa_multiflora	Rmu_co8050730.1_g000001 Rmu_sc0002299.1_g000035 Rmu_sc0026063.1_g000001 Rmu_sc0026064.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153360
rosa_rugosa	Rorug01G0477200 Rorug01G0477300 Rorug01G0477400 Rorug01G0477500
rosa_samantha	Rh2AG031000 Rh2BG030500 Rh2CG030900 Rh2DG030800
rosa_wichuraiana	Rw2G002440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	137, 417
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	261
AgsI	TTSAA	4 cut(s)	101, 128, 182, 217
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	3 cut(s)	22, 144, 373
AluI	AGCT	3 cut(s)	22, 144, 373
Alw21I	GWGCWC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	261
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
AspLEI	GCGC	4 cut(s)	139, 208, 417, 419
AsuHPI	GGTGA	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	249
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BisI	GCNGC	2 cut(s)	20, 204
BlpI	GCTNAGC	1 cut(s)	140
BlsI	GCNGC	2 cut(s)	21, 205
BmiI	GGNNCC	1 cut(s)	393
BmsI	GCATC	1 cut(s)	106
Bpu1102I	GCTNAGC	1 cut(s)	140
BseGI	GGATG	2 cut(s)	241, 280
BseMII	CTCAG	4 cut(s)	27, 131, 161, 365
BsePI	GCGCGC	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	31
Bsh1236I	CGCG	2 cut(s)	137, 417
BshFI	GGCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	245
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	165
Bsp1720I	GCTNAGC	1 cut(s)	140
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	4 cut(s)	26, 132, 160, 366
BspFNI	CGCG	2 cut(s)	137, 417
BspLI	GGNNCC	1 cut(s)	393
BspPI	GGATC	1 cut(s)	173
BssHII	GCGCGC	1 cut(s)	415
BssMI	GATC	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	210, 417
BstDEI	CTNAG	4 cut(s)	13, 140, 147, 374
BstF5I	GGATG	2 cut(s)	241, 280
BstFNI	CGCG	2 cut(s)	137, 417
BstHHI	GCGC	4 cut(s)	139, 208, 417, 419
BstKTI	GATC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 209
BstUI	CGCG	2 cut(s)	137, 417
BstV1I	GCAGC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	241, 280
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	210, 417
CfoI	GCGC	4 cut(s)	139, 208, 417, 419
CviAII	CATG	1 cut(s)	428
CviJI	RGCY	7 cut(s)	22, 144, 153, 248, 373, 392, 473
CviKI_1	RGCY	7 cut(s)	22, 144, 153, 248, 373, 392, 473
DdeI	CTNAG	4 cut(s)	13, 140, 147, 374
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
EaeI	YGGCCR	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	146
FaeI	CATG	1 cut(s)	431
FaiI	YATR	5 cut(s)	233, 238, 359, 365, 429
FatI	CATG	1 cut(s)	427
Fnu4HI	GCNGC	2 cut(s)	20, 204
FokI	GGATG	2 cut(s)	228, 287
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	20, 204
GlaI	GCGC	4 cut(s)	138, 207, 416, 418
GluI	GCNGC	2 cut(s)	20, 204
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	1 cut(s)	245
HhaI	GCGC	4 cut(s)	139, 208, 417, 419
Hin1II	CATG	1 cut(s)	431
Hin6I	GCGC	4 cut(s)	137, 206, 415, 417
HinP1I	GCGC	4 cut(s)	137, 206, 415, 417
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HinfI	GANTC	3 cut(s)	7, 124, 293
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	2 cut(s)	380, 459
Hpy188I	TCNGA	5 cut(s)	16, 115, 123, 150, 259
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	2 cut(s)	380, 459
Hpy99I	CGWCG	3 cut(s)	173, 191, 194
HpyAV	CCTTC	2 cut(s)	107, 164
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	357
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 209
HpyF3I	CTNAG	4 cut(s)	13, 140, 147, 374
Hsp92II	CATG	1 cut(s)	431
HspAI	GCGC	4 cut(s)	137, 206, 415, 417
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	27, 397
LpnPI	CCDG	2 cut(s)	194, 258
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	2 cut(s)	39, 206
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	5 cut(s)	42, 198, 261, 324, 340
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	3 cut(s)	121, 265, 463
MseI	TTAA	2 cut(s)	303, 327
MslI	CAYNNNNRTG	1 cut(s)	217
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	1 cut(s)	245
MvnI	CGCG	2 cut(s)	137, 417
MwoI	GCNNNNNNNGC	2 cut(s)	150, 209
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	1 cut(s)	431
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	69
PauI	GCGCGC	1 cut(s)	415
PfeI	GAWTC	3 cut(s)	7, 124, 293
PkrI	GCNGC	2 cut(s)	21, 205
Psp124BI	GAGCTC	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	393
PteI	GCGCGC	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	217
SacI	GAGCTC	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	303, 327
SatI	GCNGC	2 cut(s)	20, 204
Sau3AI	GATC	1 cut(s)	165
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	4 cut(s)	24, 99, 146, 375
SfaNI	GCATC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	217
Sse9I	AATT	5 cut(s)	42, 198, 261, 324, 340
SsiI	CCGC	1 cut(s)	203
SstI	GAGCTC	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	5
TasI	AATT	5 cut(s)	42, 198, 261, 324, 340
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	3 cut(s)	7, 124, 293
Tru1I	TTAA	2 cut(s)	303, 327
Tru9I	TTAA	2 cut(s)	303, 327
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	1 cut(s)	416
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	273
XapI	RAATTY	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.