Rw2G002440

Rap1-interacting factor 1 N terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006378
Physical Location & Seq
Reverse (-)
2025548 .. 2031775
6228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G002440.1

Sequence Viewer

Length: 2829 bp
ATGTCGAATCTCTCAGACCAGCTCCAAGAAATCAAATCCCTAATTTCTTCACCCACCAAATCAAACAAGTCACTCGCTTATTCCACTCTATCACACCTTCAACAACAGTCCTCCGATGCTCTGATTCAAACACTCGCGCTGAGCTCGCAGAGCCTTCTCCGTTGGATCGTCGCCGATATTCAAGACGACGACGAAGAAATTGCGGCGCAGGCATTGAAATGTTTGGGTTTTATGATATACCATCCGGCCATTGGTTCCGAAATTTCAGTGGAGGATGTGAAGTTGGTTTTGGAATCATTGGTTAAACTCATTACAACTACGAAAATTAAGTCGGTTTGTAATTTAGGAGTGTGGTGCATATCTATACAACAGCTGAGTGAACCACTTTTGGCTCCCCATTTCCATTCTCTTTTGCGCGCAGTAGTTCATGCCATTGACAATCCCATTGGCTCTCTGTCAACAACTTTTGAGGCTATTCAGGCTGTCATTAAGCTAGCTACTCTTTTAAGTGAGAGCATGAGAGAGTTGTCTCATATATGGGCACCTCCAATATATAGAAGACTGCTTAGCTCTGATAAGAGAGACAGGGATATGTCAGAAAGGTGTCTGTTGAAGATTAGATCCACAATCATACCCCCTCCAATAGATCTCTCCAAGGTACTTGTCAGAGATTTAAAGACAAAGTTGCTCACTATGATGCACGATATGCTAACCAGTGGTATGAAGGTTCAAACTATTCAAGCATGGGGATGGTATATCCGCTTACTAGGGTCTCATGCCTTGAAGAACAGACATTTAATTAATGATATGCTGAAAATTCCTGAGAAAACATTTTCAGATCACGACTCACAAGTTCAGATTGCTTCCCAGGTTGCCTGGGAAGGTCTTATTGATGCTCTTATTCATCCTCCAATGATATTACCATGTGCAACAAATGCTGCAAAAGAGGATGATGGTACGCAAAAAAAGGGAACACATAAAGGAAACAGTGGTGACACCCAAAACACTGGATCTTTGAAAAGCGTAAGGCTGATCATGACACCACTGATAGGCATCATGTTGAGTGACTGTGATGTATCTGTCCACATGGCTTGCTTGAACACATGGTGCTATCTATTACATAGACTTGATACCTCTCTGAATGATTCTTCAATGATCAACCTGGTAGTAGACCCTATCTTTGAAGCAGCTTTTCAACTTGATCCTGATGGTAAGAGCTTCTGGGCTAGGGATCTGTGCATTAATTTGCTTGATGATTTTATATCAGCAAAATGTAAACCTCAAGGCTATGACCCACGTAACCAGGTAAGCCAGCAGTTATCAGCCAAAACCTCTATGATTGCTCCCATTATATCTAGCAGTTGCTCATGGAAGCAGTATCCTATTAAATGGTTGCCATGGGATTTAAGTCTGTTGGACTTTCATTTAAAGATGATCTACAGTCTCATCCATCAACCATCAAGGCAAACTGTCTGCCATGATAACAGGGTTCCAGCTGATGATGCTCCCTTAAGGTTATTTAGAGCTGTTTTGAAAGGAGTTGAACAGGAGTTCAAGAGGTCGTCCATCGATTATGATGATATTATGTTGTGTTTGAATGCAGTATTGAAGTTCTTAAGAAATATGTGTGAAGAACTAAGTCTGGATGGTAGTGACAGAAATGGCTTGCATCATGTATCATTTCAGTATATGGAGGCTGTCAGCGAGGTGATAGAACCTACTCTAATGGGATCCCCTCTTTACAAGGTGGCATTGAACATCAAGTATATTGAAAACCTGCAAATGATTCCTGACGTTGGATATGAAAAATCAGGTGTCTGCTCTATTGGTTATATGGAAATGGTTTCGCCAATGGTTTATTTAAGCGTACTTTATTTCACTGTGGTGGTTCGGTCAACTTTTAGTACGTCCAAAGCTGACTACATTCTGCAGGGAATGCAGCAATATTTTAAATTTATGTTATCATCTTTTGGTCCCCTGGAAAGTATCGTTATCACAACTGAATTATTGTACAAGCACACAGGGCCAGGCTGCTTAACGATGTGGATAGCAATAGCAGAAAGTCTGAAAAACTACATAAATGATGTGAAGGATCTTTCATTGTTCAAAATGGACTCTGAGAGTAAGGGTTGTTATGCCATGAGCCATCTAATGTCCTATCCACTGCTTGTATGCTCCTGTGCCCAGAAAGGCATTATGTCAGCAATGAGTGGATGCCCCTTAGAAACCCCCTCTTCTCCACAGATGAATACTGAGCTTGAACAAGTTATCACATTATGGAAGTCCCTCTATGGTTCTATCTGTACCTCACTGTCTGGGTGTATCATTGTTGGCAGTTTCTCTGAGGCTCTAGTTTCTGTATTGGACAGGTGCCTTGACAAGTATACTAGCATGCTTACATGTACTAACGAGCTTCACTTAAACTTCAAGGATTTGGATCTTCATCTCATTTCCTTATATGGTGATGCTTTTATGTGTATTCTGAAAAATTCCAGTTCTTCAGAATCAAGTTCTGATGGAAATACCAAGCATTACTATGATTACAAGATCACTAGTGGCATTAAAGGCTGCTTGACTTTGGCCATTAGATATATGAAGCTGTCGCAGACAAAGATAGGAACAGACGCACCAATTGGTCTTCCTATGTTCTCTAGTTGCAGGTTATGTTCTGCATTGGCACTCTTCATCAGGTCCCTTCACTTGAAGCAAGATATTGTTTCCTTCTTTGAGGTTTGTTCTTCTAAGTATAATGTCATGTGCTCTGTGTCTTATTTCATTTTCTCCCAACTTGAAGCAATTTCAGCTAATAGTTGTTATTGGATAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04550 map04550
Pfam Domains
Protein Families
Rif1_N

Protein Analysis

942

Amino Acids

105.43

Weight (kDa)

6.28

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rif1_N PF12231 19 - 301 2.8e-32 Rap1-interacting factor 1 N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1785, 2649
AccB1I GGYRCC 2 cut(s) 541, 2370
AccI GTMKAC 2 cut(s) 1170, 2384
AccII CGCG 2 cut(s) 137, 417
AciI CCGC 2 cut(s) 203, 760
AclWI GGATC 9 cut(s) 173, 615, 1018, 1196, 1239, 1725, 1738, 2100, 2445
AcoI YGGCCR 2 cut(s) 246, 2580
AcsI RAATTY 4 cut(s) 261, 816, 1952, 2488
AcuI CTGAAG 1 cut(s) 2484
AdeI CACNNNGTG 1 cut(s) 1107
AfaI GTAC 7 cut(s) 660, 958, 1869, 1906, 2012, 2305, 2404
AfiI CCNNNNNNNGG 3 cut(s) 251, 1049, 1796
AflII CTTAAG 2 cut(s) 1510, 1615
AflIII ACRYGT 1 cut(s) 2399
AhlI ACTAGT 1 cut(s) 2552
AjnI CCWGG 6 cut(s) 867, 875, 1161, 1302, 1977, 2026
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AleI CACNNNNGTG 1 cut(s) 1883
Alw21I GWGCWC 2 cut(s) 146, 2762
Alw26I GTCTC 4 cut(s) 534, 576, 777, 1448
AlwI GGATC 9 cut(s) 173, 615, 1018, 1196, 1239, 1725, 1738, 2100, 2445
AoxI GGCC 3 cut(s) 246, 2024, 2580
ApeKI GCWGC 5 cut(s) 938, 1187, 1939, 2031, 2568
ApoI RAATTY 4 cut(s) 261, 816, 1952, 2488
ArsI GACNNNNNNTTYG 4 cut(s) 314, 346, 1163, 1195
AseI ATTAAT 2 cut(s) 801, 1242
AspLEI GCGC 4 cut(s) 139, 208, 417, 419
AspS9I GGNCC 3 cut(s) 1973, 2024, 2691
AsuHPI GGTGA 4 cut(s) 42, 1004, 1720, 2474
AsuNHI GCTAGC 1 cut(s) 493
AvaII GGWCC 2 cut(s) 1973, 2691
BaeGI GKGCMC 2 cut(s) 544, 2185
BalI TGGCCA 1 cut(s) 2582
BamHI GGATCC 1 cut(s) 1730
BanI GGYRCC 2 cut(s) 541, 2370
BanII GRGCYC 1 cut(s) 146
BbsI GAAGAC 2 cut(s) 565, 2630
Bbv12I GWGCWC 2 cut(s) 146, 2762
BbvI GCAGC 5 cut(s) 925, 1199, 1951, 2018, 2555
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BciT130I CCWGG 6 cut(s) 869, 877, 1163, 1304, 1979, 2028
BciVI GTATCC 1 cut(s) 1389
BclI TGATCA 2 cut(s) 1032, 1155
BcoDI GTCTC 4 cut(s) 534, 576, 777, 1448
BcuI ACTAGT 1 cut(s) 2552
BfaI CTAG 8 cut(s) 494, 767, 1227, 1356, 2351, 2388, 2553, 2652
BfmI CTRYAG 2 cut(s) 1438, 1928
BfrI CTTAAG 2 cut(s) 1510, 1615
BfuAI ACCTGC 2 cut(s) 1785, 2649
BfuI GTATCC 1 cut(s) 1389
BglII AGATCT 1 cut(s) 646
BisI GCNGC 6 cut(s) 204, 939, 1188, 1940, 2032, 2569
BlpI GCTNAGC 2 cut(s) 140, 566
BlsI GCNGC 6 cut(s) 205, 940, 1189, 1941, 2033, 2570
Bme1390I CCNGG 6 cut(s) 869, 877, 1163, 1304, 1979, 2028
Bme18I GGWCC 2 cut(s) 1973, 2691
BmgT120I GGNCC 3 cut(s) 1973, 2024, 2691
BmiI GGNNCC 8 cut(s) 256, 393, 543, 1491, 1732, 1975, 2372, 2693
BmrFI CCNGG 6 cut(s) 869, 877, 1163, 1304, 1979, 2028
BmsI GCATC 8 cut(s) 106, 687, 883, 1062, 1492, 1678, 2204, 2455
BmtI GCTAGC 1 cut(s) 497
BpiI GAAGAC 2 cut(s) 565, 2630
Bpu1102I GCTNAGC 2 cut(s) 140, 566
BpuEI CTTGAG 1 cut(s) 1266
Bsa29I ATCGAT 1 cut(s) 1569
BsaAI YACGTR 1 cut(s) 1298
BsaBI GATNNNNATC 3 cut(s) 1052, 2436, 2442
BsaI GGTCTC 1 cut(s) 777
BsaJI CCNNGG 5 cut(s) 654, 867, 876, 1397, 1977
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 1049, 1796
Bse1I ACTGG 3 cut(s) 714, 1012, 2493
Bse3DI GCAATG 1 cut(s) 2211
Bse8I GATNNNNATC 3 cut(s) 1052, 2436, 2442
BseBI CCWGG 6 cut(s) 869, 877, 1163, 1304, 1979, 2028
BseCI ATCGAT 1 cut(s) 1569
BseDI CCNNGG 5 cut(s) 654, 867, 876, 1397, 1977
BseGI GGATG 8 cut(s) 241, 280, 755, 904, 955, 1446, 1651, 2219
BseJI GATNNNNATC 3 cut(s) 1052, 2436, 2442
BseLI CCNNNNNNNGG 3 cut(s) 251, 1049, 1796
BseMI GCAATG 1 cut(s) 2211
BseMII CTCAG 7 cut(s) 27, 131, 365, 813, 2109, 2244, 2334
BseNI ACTGG 3 cut(s) 714, 1012, 2493
BsePI GCGCGC 1 cut(s) 415
BseSI GKGCMC 2 cut(s) 544, 2185
BseXI GCAGC 5 cut(s) 925, 1199, 1951, 2018, 2555
Bsh1236I CGCG 2 cut(s) 137, 417
BshFI GGCC 3 cut(s) 248, 2026, 2582
BshNI GGYRCC 2 cut(s) 541, 2370
BshVI ATCGAT 1 cut(s) 1569
BsiHKAI GWGCWC 2 cut(s) 146, 2762
BsiSI CCGG 1 cut(s) 245
BslFI GGGAC 3 cut(s) 1959, 2269, 2677
BslI CCNNNNNNNGG 3 cut(s) 251, 1049, 1796
BsmAI GTCTC 4 cut(s) 534, 576, 777, 1448
BsmFI GGGAC 3 cut(s) 1959, 2269, 2677
BsmI GAATGC 2 cut(s) 1603, 1941
BsnI GGCC 3 cut(s) 248, 2026, 2582
Bso31I GGTCTC 1 cut(s) 777
Bsp1286I GDGCHC 4 cut(s) 146, 544, 2185, 2762
Bsp1407I TGTACA 1 cut(s) 2010
Bsp1720I GCTNAGC 2 cut(s) 140, 566
Bsp19I CCATGG 1 cut(s) 1397
BspACI CCGC 2 cut(s) 203, 760
BspANI GGCC 3 cut(s) 248, 2026, 2582
BspCNI CTCAG 7 cut(s) 26, 132, 366, 814, 2110, 2245, 2335
BspDI ATCGAT 1 cut(s) 1569
BspFNI CGCG 2 cut(s) 137, 417
BspHI TCATGA 1 cut(s) 1035
BspLI GGNNCC 8 cut(s) 256, 393, 543, 1491, 1732, 1975, 2372, 2693
BspMAI CTGCAG 1 cut(s) 1932
BspMI ACCTGC 2 cut(s) 1785, 2649
BspOI GCTAGC 1 cut(s) 497
BspPI GGATC 9 cut(s) 173, 615, 1018, 1196, 1239, 1725, 1738, 2100, 2445
BspT107I GGYRCC 2 cut(s) 541, 2370
BspTI CTTAAG 2 cut(s) 1510, 1615
BspTNI GGTCTC 1 cut(s) 777
BsrDI GCAATG 1 cut(s) 2211
BsrGI TGTACA 1 cut(s) 2010
BsrI ACTGG 3 cut(s) 714, 1012, 2493
BssECI CCNNGG 5 cut(s) 654, 867, 876, 1397, 1977
BssHII GCGCGC 1 cut(s) 415
BssNAI GTATAC 1 cut(s) 2385
BssT1I CCWWGG 2 cut(s) 654, 1397
Bst1107I GTATAC 1 cut(s) 2385
Bst2UI CCWGG 6 cut(s) 869, 877, 1163, 1304, 1979, 2028
Bst4CI ACNGT 7 cut(s) 108, 989, 1070, 1442, 1471, 1882, 2313
Bst6I CTCTTC 2 cut(s) 2239, 2687
BstAFI CTTAAG 2 cut(s) 1510, 1615
BstAPI GCANNNNNTGC 3 cut(s) 706, 935, 1936
BstAUI TGTACA 1 cut(s) 2010
BstBAI YACGTR 1 cut(s) 1298
BstC8I GCNNGC 8 cut(s) 146, 210, 417, 495, 1093, 1313, 1667, 2393
BstDSI CCRYGG 1 cut(s) 1397
BstF5I GGATG 8 cut(s) 241, 280, 755, 904, 955, 1446, 1651, 2219
BstFNI CGCG 2 cut(s) 137, 417
BstHHI GCGC 4 cut(s) 139, 208, 417, 419
BstMAI GTCTC 4 cut(s) 534, 576, 777, 1448
BstNI CCWGG 6 cut(s) 869, 877, 1163, 1304, 1979, 2028
BstNSI RCATGY 2 cut(s) 2395, 2403
BstSCI CCNGG 6 cut(s) 867, 875, 1161, 1302, 1977, 2026
BstSFI CTRYAG 2 cut(s) 1438, 1928
BstSLI GKGCMC 2 cut(s) 544, 2185
BstUI CGCG 2 cut(s) 137, 417
BstV1I GCAGC 5 cut(s) 925, 1199, 1951, 2018, 2555
BstV2I GAAGAC 2 cut(s) 565, 2630
BstX2I RGATCY 7 cut(s) 620, 646, 1010, 1231, 1730, 2092, 2437
BstXI CCANNNNNNTGG 1 cut(s) 1007
BstYI RGATCY 7 cut(s) 620, 646, 1010, 1231, 1730, 2092, 2437
BstZ17I GTATAC 1 cut(s) 2385
Bsu15I ATCGAT 1 cut(s) 1569
BsuI GTATCC 1 cut(s) 1389
BsuRI GGCC 3 cut(s) 248, 2026, 2582
BsuTUI ATCGAT 1 cut(s) 1569
BtgI CCRYGG 1 cut(s) 1397
BtsCI GGATG 8 cut(s) 241, 280, 755, 904, 955, 1446, 1651, 2219
BtsI GCAGTG 1 cut(s) 2162
BtsIMutI CAGTG 8 cut(s) 273, 721, 994, 1005, 1043, 1878, 2162, 2309
BveI ACCTGC 2 cut(s) 1785, 2649
Cac8I GCNNGC 8 cut(s) 146, 210, 417, 495, 1093, 1313, 1667, 2393
CciI TCATGA 1 cut(s) 1035
CfoI GCGC 4 cut(s) 139, 208, 417, 419
Cfr13I GGNCC 3 cut(s) 1973, 2024, 2691
ClaI ATCGAT 1 cut(s) 1569
CseI GACGC 1 cut(s) 2633
CsiI ACCWGGT 2 cut(s) 1161, 1302
Csp6I GTAC 7 cut(s) 659, 957, 1868, 1905, 2011, 2304, 2403
CspCI CAANNNNNGTGG 2 cut(s) 1073, 1108
CviQI GTAC 7 cut(s) 659, 957, 1868, 1905, 2011, 2304, 2403
DraI TTTAAA 3 cut(s) 675, 1428, 1951
DraIII CACNNNGTG 1 cut(s) 1107
EaeI YGGCCR 2 cut(s) 246, 2580
Eam1104I CTCTTC 2 cut(s) 2239, 2687
EarI CTCTTC 2 cut(s) 2239, 2687
Ecl136II GAGCTC 1 cut(s) 144
Eco130I CCWWGG 2 cut(s) 654, 1397
Eco24I GRGCYC 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 777
Eco47I GGWCC 2 cut(s) 1973, 2691
Eco53kI GAGCTC 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 2484
EcoICRI GAGCTC 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 2691
EcoRII CCWGG 6 cut(s) 867, 875, 1161, 1302, 1977, 2026
EcoT14I CCWWGG 2 cut(s) 654, 1397
EcoT38I GRGCYC 1 cut(s) 146
ErhI CCWWGG 2 cut(s) 654, 1397
FaqI GGGAC 3 cut(s) 1959, 2269, 2677
FbaI TGATCA 2 cut(s) 1032, 1155
FblI GTMKAC 2 cut(s) 1170, 2384
Fnu4HI GCNGC 6 cut(s) 204, 939, 1188, 1940, 2032, 2569
FokI GGATG 8 cut(s) 228, 287, 762, 891, 962, 1433, 1658, 2226
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 6 cut(s) 204, 939, 1188, 1940, 2032, 2569
FspBI CTAG 8 cut(s) 494, 767, 1227, 1356, 2351, 2388, 2553, 2652
GlaI GCGC 4 cut(s) 138, 207, 416, 418
GluI GCNGC 6 cut(s) 204, 939, 1188, 1940, 2032, 2569
HaeIII GGCC 3 cut(s) 248, 2026, 2582
HapII CCGG 1 cut(s) 245
HgaI GACGC 1 cut(s) 2633
HhaI GCGC 4 cut(s) 139, 208, 417, 419
Hin6I GCGC 4 cut(s) 137, 206, 415, 417
HinP1I GCGC 4 cut(s) 137, 206, 415, 417
HincII GTYRAC 2 cut(s) 459, 1896
HindII GTYRAC 2 cut(s) 459, 1896
HinfI GANTC 8 cut(s) 7, 124, 293, 845, 1145, 1786, 2114, 2504
HpaII CCGG 1 cut(s) 245
HphI GGTGA 4 cut(s) 42, 1004, 1720, 2474
Hpy166II GTNNAC 7 cut(s) 380, 459, 1084, 1171, 1277, 1896, 2385
Hpy188III TCNNGA 8 cut(s) 182, 821, 842, 1036, 1205, 1555, 1643, 1790
Hpy8I GTNNAC 7 cut(s) 380, 459, 1084, 1171, 1277, 1896, 2385
Hpy99I CGWCG 3 cut(s) 173, 191, 194
HpyAV CCTTC 7 cut(s) 107, 164, 718, 875, 2083, 2705, 2731
HpyCH4III ACNGT 7 cut(s) 108, 989, 1070, 1442, 1471, 1882, 2313
HpyCH4IV ACGT 3 cut(s) 1297, 1794, 1907
HpySE526I ACGT 3 cut(s) 1297, 1794, 1907
HspAI GCGC 4 cut(s) 137, 206, 415, 417
Ksp22I TGATCA 2 cut(s) 1032, 1155
LmnI GCTCC 5 cut(s) 27, 397, 1348, 1510, 2180
Lsp1109I GCAGC 5 cut(s) 925, 1199, 1951, 2018, 2555
LweI GCATC 8 cut(s) 106, 687, 883, 1062, 1492, 1678, 2204, 2455
MabI ACCWGGT 2 cut(s) 1161, 1302
MaeI CTAG 8 cut(s) 494, 767, 1227, 1356, 2351, 2388, 2553, 2652
MaeII ACGT 3 cut(s) 1297, 1794, 1907
MaeIII GTNAC 5 cut(s) 69, 992, 1064, 1298, 1652
MfeI CAATTG 1 cut(s) 2631
MflI RGATCY 7 cut(s) 620, 646, 1010, 1231, 1730, 2092, 2437
MhlI GDGCHC 4 cut(s) 146, 544, 2185, 2762
MlsI TGGCCA 1 cut(s) 2582
MluNI TGGCCA 1 cut(s) 2582
MlyI GAGTC 2 cut(s) 839, 2108
MmeI TCCRAC 3 cut(s) 143, 1395, 1777
Mox20I TGGCCA 1 cut(s) 2582
MscI TGGCCA 1 cut(s) 2582
MslI CAYNNNNRTG 5 cut(s) 217, 695, 748, 1883, 2535
Msp20I TGGCCA 1 cut(s) 2582
MspA1I CMGCKG 2 cut(s) 373, 1496
MspCI CTTAAG 2 cut(s) 1510, 1615
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 6 cut(s) 869, 877, 1163, 1304, 1979, 2028
MunI CAATTG 1 cut(s) 2631
Mva1269I GAATGC 2 cut(s) 1603, 1941
MvaI CCWGG 6 cut(s) 869, 877, 1163, 1304, 1979, 2028
MvnI CGCG 2 cut(s) 137, 417
NcoI CCATGG 1 cut(s) 1397
NheI GCTAGC 1 cut(s) 493
NlaIV GGNNCC 8 cut(s) 256, 393, 543, 1491, 1732, 1975, 2372, 2693
NmuCI GTSAC 4 cut(s) 69, 992, 1064, 1652
NspI RCATGY 2 cut(s) 2395, 2403
OliI CACNNNNGTG 1 cut(s) 1883
PacI TTAATTAA 1 cut(s) 801
PaeI GCATGC 1 cut(s) 2395
PagI TCATGA 1 cut(s) 1035
PauI GCGCGC 1 cut(s) 415
PciI ACATGT 1 cut(s) 2399
PctI GAATGC 2 cut(s) 1603, 1941
PfeI GAWTC 6 cut(s) 7, 124, 293, 1145, 1786, 2504
PkrI GCNGC 6 cut(s) 205, 940, 1189, 1941, 2033, 2570
PleI GAGTC 2 cut(s) 839, 2108
PpsI GAGTC 2 cut(s) 839, 2108
Ppu21I YACGTR 1 cut(s) 1298
PpuMI RGGWCCY 1 cut(s) 2691
PscI ACATGT 1 cut(s) 2399
PshBI ATTAAT 2 cut(s) 801, 1242
Psp124BI GAGCTC 1 cut(s) 146
Psp5II RGGWCCY 1 cut(s) 2691
Psp6I CCWGG 6 cut(s) 867, 875, 1161, 1302, 1977, 2026
PspGI CCWGG 6 cut(s) 867, 875, 1161, 1302, 1977, 2026
PspN4I GGNNCC 8 cut(s) 256, 393, 543, 1491, 1732, 1975, 2372, 2693
PspPI GGNCC 3 cut(s) 1973, 2024, 2691
PspPPI RGGWCCY 1 cut(s) 2691
PstI CTGCAG 1 cut(s) 1932
PsuI RGATCY 7 cut(s) 620, 646, 1010, 1231, 1730, 2092, 2437
PteI GCGCGC 1 cut(s) 415
PvuII CAGCTG 2 cut(s) 373, 1496
RsaI GTAC 7 cut(s) 660, 958, 1869, 1906, 2012, 2305, 2404
RsaNI GTAC 7 cut(s) 659, 957, 1868, 1905, 2011, 2304, 2403
RseI CAYNNNNRTG 5 cut(s) 217, 695, 748, 1883, 2535
SacI GAGCTC 1 cut(s) 146
SatI GCNGC 6 cut(s) 204, 939, 1188, 1940, 2032, 2569
Sau96I GGNCC 3 cut(s) 1973, 2024, 2691
SchI GAGTC 2 cut(s) 839, 2108
ScrFI CCNGG 6 cut(s) 869, 877, 1163, 1304, 1979, 2028
SduI GDGCHC 4 cut(s) 146, 544, 2185, 2762
SexAI ACCWGGT 2 cut(s) 1161, 1302
SfaNI GCATC 8 cut(s) 106, 687, 883, 1062, 1492, 1678, 2204, 2455
SfcI CTRYAG 2 cut(s) 1438, 1928
SinI GGWCC 2 cut(s) 1973, 2691
SmiMI CAYNNNNRTG 5 cut(s) 217, 695, 748, 1883, 2535
SmlI CTYRAG 3 cut(s) 1281, 1510, 1615
SmoI CTYRAG 3 cut(s) 1281, 1510, 1615
SpeI ACTAGT 1 cut(s) 2552
SphI GCATGC 1 cut(s) 2395
SsiI CCGC 2 cut(s) 203, 760
SspI AATATT 1 cut(s) 1946
SspMI CTAG 8 cut(s) 494, 767, 1227, 1356, 2351, 2388, 2553, 2652
SstI GAGCTC 1 cut(s) 146
StyD4I CCNGG 6 cut(s) 867, 875, 1161, 1302, 1977, 2026
StyI CCWWGG 2 cut(s) 654, 1397
TaaI ACNGT 7 cut(s) 108, 989, 1070, 1442, 1471, 1882, 2313
TaiI ACGT 3 cut(s) 1300, 1797, 1910
TaqI TCGA 2 cut(s) 5, 1569
TaqII GACCGA 1 cut(s) 1881
TatI WGTACW 2 cut(s) 2010, 2402
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 6 cut(s) 7, 124, 293, 1145, 1786, 2504
TscAI CASTG 8 cut(s) 273, 721, 994, 1012, 1050, 1885, 2169, 2316
TseFI GTSAC 4 cut(s) 69, 992, 1064, 1652
TseI GCWGC 5 cut(s) 938, 1187, 1939, 2031, 2568
Tsp45I GTSAC 4 cut(s) 69, 992, 1064, 1652
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 8 cut(s) 273, 721, 994, 1012, 1050, 1885, 2169, 2316
Vha464I CTTAAG 2 cut(s) 1510, 1615
VpaK11BI GGWCC 2 cut(s) 1973, 2691
VspI ATTAAT 2 cut(s) 801, 1242
XapI RAATTY 4 cut(s) 261, 816, 1952, 2488
XceI RCATGY 2 cut(s) 2395, 2403
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XmiI GTMKAC 2 cut(s) 1170, 2384
XspI CTAG 8 cut(s) 494, 767, 1227, 1356, 2351, 2388, 2553, 2652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.