Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8050730.1

Orthogroup ID

OG0006378

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 552

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8050730.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 551 bp

atgatcaacctggtagtagaccctatctttgaagcagcttttcaacttgatcctgatggtaagagcttctgggctagggatctgtgcattaatttgcttgatgattttatatcagcaaaatgtaaacctcaaggctatgacccacgtaaccaggtaagccagcagttatcagccaaaacctctatgaatgctcccattatatctggcagttgctcatggaagcagtatcctattaaatggttgccatgggatttaagtctgttggactttcatttaaagatgatctacagtctcatccgtcaaccatcaaggcaaactgtctgccatgataacagggttccagctgatgatgctcccttaaggttatttagagctgttttgaaaggagttgaacaggagttcaagaggtcgtccatctattatgatgatattatgttgtgtttgaatgcagtattgaagttcttaagaaatatgtgtgaagaactaagtctggatggtagtgacagaaatggcttgcatcatgtatcatttcagtatatggaggctgtcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Rif1_N

Protein Analysis

183

Amino Acids

21.09

Weight (kDa)

6.06

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006378)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02590 FvH4_1g02590 FvH4_1g02590
malus_domestica	MD08G1122800.v1.1 MD15G1166600.v1.1 MD15G1167400.v1.1
prunus_persica	Prupe.7G248700_v2.0.a1 Prupe.7G248700_v2.0.a1 Prupe.7G248700_v2.0.a1
pyrus_communis	pycom15g14880 pycom15g14920
rosa_chinensis	RchiOBHm_Chr2g0087621
rosa_laevigata	RLG00000015887
rosa_multiflora	Rmu_co8050730.1_g000001 Rmu_sc0002299.1_g000035 Rmu_sc0026063.1_g000001 Rmu_sc0026064.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153360
rosa_rugosa	Rorug01G0477200 Rorug01G0477300 Rorug01G0477400 Rorug01G0477500
rosa_samantha	Rh2AG031000 Rh2BG030500 Rh2CG030900 Rh2DG030800
rosa_wichuraiana	Rw2G002440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	18
AclWI	GGATC	2 cut(s)	44, 87
AflII	CTTAAG	2 cut(s)	358, 463
AgsI	TTSAA	7 cut(s)	32, 44, 382, 392, 403, 445, 457
AjnI	CCWGG	2 cut(s)	9, 150
AluBI	AGCT	4 cut(s)	38, 66, 344, 374
AluI	AGCT	4 cut(s)	38, 66, 344, 374
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	44, 87
ApeKI	GCWGC	1 cut(s)	35
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AseI	ATTAAT	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	4 cut(s)	50, 313, 422, 488
BciT130I	CCWGG	2 cut(s)	11, 152
BciVI	GTATCC	1 cut(s)	237
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	286
BfrI	CTTAAG	2 cut(s)	358, 463
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	2 cut(s)	11, 152
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	2 cut(s)	11, 152
BmsI	GCATC	2 cut(s)	340, 526
BpuEI	CTTGAG	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	11, 152
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	2 cut(s)	294, 499
BseXI	GCAGC	1 cut(s)	47
BsmAI	GTCTC	1 cut(s)	296
BsmI	GAATGC	2 cut(s)	193, 451
Bsp143I	GATC	4 cut(s)	3, 49, 79, 282
Bsp19I	CCATGG	1 cut(s)	245
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	2 cut(s)	44, 87
BspTI	CTTAAG	2 cut(s)	358, 463
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	4 cut(s)	3, 49, 79, 282
BssT1I	CCWWGG	1 cut(s)	245
Bst2UI	CCWGG	2 cut(s)	11, 152
Bst4CI	ACNGT	2 cut(s)	290, 319
BstAFI	CTTAAG	2 cut(s)	358, 463
BstBAI	YACGTR	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	161, 515
BstDEI	CTNAG	1 cut(s)	485
BstDSI	CCRYGG	1 cut(s)	245
BstF5I	GGATG	2 cut(s)	294, 499
BstKTI	GATC	4 cut(s)	6, 52, 82, 285
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	4 cut(s)	3, 49, 79, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	2 cut(s)	11, 152
BstSCI	CCNGG	2 cut(s)	9, 150
BstSFI	CTRYAG	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	237
BtgI	CCRYGG	1 cut(s)	245
BtsCI	GGATG	2 cut(s)	294, 499
Cac8I	GCNNGC	2 cut(s)	161, 515
CsiI	ACCWGGT	2 cut(s)	9, 150
CviAII	CATG	4 cut(s)	216, 246, 326, 521
DdeI	CTNAG	1 cut(s)	485
DpnI	GATC	4 cut(s)	5, 51, 81, 284
DpnII	GATC	4 cut(s)	3, 49, 79, 282
DraI	TTTAAA	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	9, 150
EcoT14I	CCWWGG	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	4 cut(s)	219, 249, 329, 524
FatI	CATG	4 cut(s)	215, 245, 325, 520
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	2 cut(s)	281, 506
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	1 cut(s)	36
Hin1II	CATG	4 cut(s)	219, 249, 329, 524
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
Hpy166II	GTNNAC	3 cut(s)	19, 125, 302
Hpy188III	TCNNGA	3 cut(s)	53, 403, 491
Hpy8I	GTNNAC	3 cut(s)	19, 125, 302
HpyCH4III	ACNGT	2 cut(s)	290, 319
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	3 cut(s)	87, 449, 517
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	1 cut(s)	485
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	4 cut(s)	219, 249, 329, 524
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 49, 79, 282
LmnI	GCTCC	2 cut(s)	196, 358
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	2 cut(s)	340, 526
MabI	ACCWGGT	2 cut(s)	9, 150
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	2 cut(s)	146, 500
MalI	GATC	4 cut(s)	5, 51, 81, 284
MboI	GATC	4 cut(s)	3, 49, 79, 282
MboII	GAAGA	1 cut(s)	491
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	4 cut(s)	138, 190, 399, 535
MseI	TTAA	6 cut(s)	90, 234, 254, 275, 359, 464
MspA1I	CMGCKG	1 cut(s)	344
MspCI	CTTAAG	2 cut(s)	358, 463
MspR9I	CCNGG	2 cut(s)	11, 152
Mva1269I	GAATGC	2 cut(s)	193, 451
MvaI	CCWGG	2 cut(s)	11, 152
MwoI	GCNNNNNNNGC	1 cut(s)	350
NcoI	CCATGG	1 cut(s)	245
NdeII	GATC	4 cut(s)	3, 49, 79, 282
NlaIII	CATG	4 cut(s)	219, 249, 329, 524
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	500
PctI	GAATGC	2 cut(s)	193, 451
PkrI	GCNGC	1 cut(s)	37
Ppu21I	YACGTR	1 cut(s)	146
PshBI	ATTAAT	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	9, 150
PspGI	CCWGG	2 cut(s)	9, 150
PspN4I	GGNNCC	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	344
SaqAI	TTAA	6 cut(s)	90, 234, 254, 275, 359, 464
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	4 cut(s)	3, 49, 79, 282
ScrFI	CCNGG	2 cut(s)	11, 152
SexAI	ACCWGGT	2 cut(s)	9, 150
SfaNI	GCATC	2 cut(s)	340, 526
SfcI	CTRYAG	1 cut(s)	286
SmlI	CTYRAG	3 cut(s)	129, 358, 463
SmoI	CTYRAG	3 cut(s)	129, 358, 463
Sse9I	AATT	1 cut(s)	91
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	9, 150
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	2 cut(s)	290, 319
TaiI	ACGT	1 cut(s)	148
TasI	AATT	1 cut(s)	91
Tru1I	TTAA	6 cut(s)	90, 234, 254, 275, 359, 464
Tru9I	TTAA	6 cut(s)	90, 234, 254, 275, 359, 464
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	2 cut(s)	200, 260
TspGWI	ACGGA	1 cut(s)	287
Vha464I	CTTAAG	2 cut(s)	358, 463
VspI	ATTAAT	1 cut(s)	90
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.