Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002299.1

Orthogroup ID

OG0006378

Physical Location & Seq

Genomic Coordinates Reverse (-)

172244 .. 174642

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002299.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

atgtggatagcaatagcagaaagtctgaaaaactacataaatgatgtgaaggatctttcattgttcaaaatggactctgagagtaagggttgttatgccatgagccatctaatgtcctatccactgcttgtatgctcctgtgcccagaaagacattatgtcagcaatgagtggatgccccttagaaaccccttcttctccacagatgaatactgagcttgaacaagttatcacattatggaagtccctctatggttctatctgtacctcactgtctgggtgtatcattgttggcagtttctctgaggctctagtgtctgtattggacaggtgccttgacaagtatactagcatgcttacatgtactaacgagcttcacttaaacttcaaggatttggatcttcatctcatttccttatacggtgatgcttttatgtgtattctgaaaaattccagttcttcagaatcaagttctgatggaaataccaagcattactatgattacaagatcactagtggcattaaaggctgcttgactttggccattagatgtatgaagctgtcgcagacaaagataggaacagacgcaccaattggtcttcctatgttctctaggttatgttctgcattggcactcttcatcaggtcccttcacttgaagcaagatattgtttccttctttgagatgatatcatgtccactgcttgagtggctgggatacaagaaaatgcaagatgagggcaccagtgatcaatttgaactcctatggaccgaaatgcttaattgtttaagacgaagtcagcctccaatagtctttgattctgcatttctcaaactccaggcctctatccttgagaaaactcttgaccactcaaaactgtccatttcagagccaaccatcaccttttggaactccatatatggcgaacagatcaacttggattaccctcagaccttgctccatgtcctggacaagctctggagacagggaagaataaacctccacaagagaagcctacctcttcaaagatgtcaatctaaatcggaagccatcactgctccaccgagattcacggtcaatacagcacacaatagaggctctaaaagagtagaactagtagagaataccacagacagtaagcagaaggaaatgccacattcgagtttgaaaaggaagaggtcggaactcactgagcatcagaaggaagtgagacgagcacaacgaggaaggggaagggattgtggcggacacggcattggtatccagacttacacaacactcgacttttcacaagggaatgaggattcgcaagacagcgaagatatccggaatccagaatgcattttgcagatgttgaggaacagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Rif1_N

Protein Analysis

455

Amino Acids

51.54

Weight (kDa)

7.49

Isoelectric Point (pI)

56.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006378)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02590 FvH4_1g02590 FvH4_1g02590
malus_domestica	MD08G1122800.v1.1 MD15G1166600.v1.1 MD15G1167400.v1.1
prunus_persica	Prupe.7G248700_v2.0.a1 Prupe.7G248700_v2.0.a1 Prupe.7G248700_v2.0.a1
pyrus_communis	pycom15g14880 pycom15g14920
rosa_chinensis	RchiOBHm_Chr2g0087621
rosa_laevigata	RLG00000015887
rosa_multiflora	Rmu_co8050730.1_g000001 Rmu_sc0002299.1_g000035 Rmu_sc0026063.1_g000001 Rmu_sc0026064.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153360
rosa_rugosa	Rorug01G0477200 Rorug01G0477300 Rorug01G0477400 Rorug01G0477500
rosa_samantha	Rh2AG031000 Rh2BG030500 Rh2CG030900 Rh2DG030800
rosa_wichuraiana	Rw2G002440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	330, 740
AccB7I	CCANNNNNTGG	1 cut(s)	967
AccI	GTMKAC	1 cut(s)	344
AccIII	TCCGGA	1 cut(s)	1326
AciI	CCGC	1 cut(s)	1245
AclWI	GGATC	2 cut(s)	60, 405
AcoI	YGGCCR	1 cut(s)	540
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	2 cut(s)	265, 364
AfiI	CCNNNNNNNGG	1 cut(s)	967
AflIII	ACRYGT	1 cut(s)	359
AgsI	TTSAA	7 cut(s)	67, 221, 388, 658, 758, 1025, 1168
AhdI	GACNNNNNGTC	1 cut(s)	157
AhlI	ACTAGT	2 cut(s)	512, 1114
AjnI	CCWGG	2 cut(s)	837, 966
AluBI	AGCT	4 cut(s)	217, 373, 559, 976
AluI	AGCT	4 cut(s)	217, 373, 559, 976
Alw21I	GWGCWC	1 cut(s)	1219
Alw26I	GTCTC	2 cut(s)	976, 1204
AlwI	GGATC	2 cut(s)	60, 405
Aor13HI	TCCGGA	1 cut(s)	1326
AoxI	GGCC	2 cut(s)	540, 840
ApeKI	GCWGC	1 cut(s)	528
ApoI	RAATTY	1 cut(s)	448
AspS9I	GGNCC	2 cut(s)	645, 768
AsuHPI	GGTGA	2 cut(s)	434, 892
AvaII	GGWCC	2 cut(s)	645, 768
BaeGI	GKGCMC	2 cut(s)	145, 743
BalI	TGGCCA	1 cut(s)	542
BanI	GGYRCC	2 cut(s)	330, 740
BbsI	GAAGAC	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	1219
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	4 cut(s)	114, 470, 905, 1058
BceAI	ACGGC	1 cut(s)	1267
BciT130I	CCWGG	2 cut(s)	839, 968
BciVI	GTATCC	2 cut(s)	710, 1271
BclI	TGATCA	1 cut(s)	748
BcoDI	GTCTC	2 cut(s)	976, 1204
BcuI	ACTAGT	2 cut(s)	512, 1114
BfaI	CTAG	5 cut(s)	311, 348, 513, 612, 1115
BfuI	GTATCC	2 cut(s)	710, 1271
BisI	GCNGC	1 cut(s)	529
BlsI	GCNGC	1 cut(s)	530
Bme1390I	CCNGG	2 cut(s)	839, 968
Bme18I	GGWCC	2 cut(s)	645, 768
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmgT120I	GGNCC	2 cut(s)	645, 768
BmiI	GGNNCC	3 cut(s)	332, 647, 742
BmrFI	CCNGG	2 cut(s)	839, 968
BmsI	GCATC	3 cut(s)	164, 415, 1204
BpiI	GAAGAC	1 cut(s)	590
BpmI	CTGGAG	2 cut(s)	821, 1000
BpuEI	CTTGAG	2 cut(s)	725, 872
BsaBI	GATNNNNATC	3 cut(s)	396, 402, 1033
BsaWI	WCCGGW	1 cut(s)	1326
Bsc4I	CCNNNNNNNGG	1 cut(s)	967
Bse1I	ACTGG	2 cut(s)	453, 744
Bse3DI	GCAATG	1 cut(s)	171
Bse8I	GATNNNNATC	3 cut(s)	396, 402, 1033
BseAI	TCCGGA	1 cut(s)	1326
BseBI	CCWGG	2 cut(s)	839, 968
BseGI	GGATG	1 cut(s)	179
BseJI	GATNNNNATC	3 cut(s)	396, 402, 1033
BseLI	CCNNNNNNNGG	1 cut(s)	967
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	5 cut(s)	69, 204, 294, 962, 1182
BseNI	ACTGG	2 cut(s)	453, 744
BseSI	GKGCMC	2 cut(s)	145, 743
BseXI	GCAGC	1 cut(s)	515
BseYI	CCCAGC	1 cut(s)	712
BshFI	GGCC	2 cut(s)	542, 842
BshNI	GGYRCC	2 cut(s)	330, 740
BsiHKAI	GWGCWC	1 cut(s)	1219
BsiSI	CCGG	1 cut(s)	1327
BslFI	GGGAC	2 cut(s)	229, 631
BslI	CCNNNNNNNGG	1 cut(s)	967
BsmAI	GTCTC	2 cut(s)	976, 1204
BsmBI	CGTCTC	1 cut(s)	1204
BsmFI	GGGAC	2 cut(s)	229, 631
BsmI	GAATGC	1 cut(s)	1343
BsnI	GGCC	2 cut(s)	542, 842
Bsp1286I	GDGCHC	3 cut(s)	145, 743, 1219
Bsp13I	TCCGGA	1 cut(s)	1326
Bsp143I	GATC	5 cut(s)	52, 397, 507, 748, 930
BspACI	CCGC	1 cut(s)	1245
BspANI	GGCC	2 cut(s)	542, 842
BspCNI	CTCAG	5 cut(s)	70, 205, 295, 961, 1183
BspEI	TCCGGA	1 cut(s)	1326
BspLI	GGNNCC	3 cut(s)	332, 647, 742
BspPI	GGATC	2 cut(s)	60, 405
BspT107I	GGYRCC	2 cut(s)	330, 740
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	2 cut(s)	453, 744
BssMI	GATC	5 cut(s)	52, 397, 507, 748, 930
BssNAI	GTATAC	1 cut(s)	345
Bst1107I	GTATAC	1 cut(s)	345
Bst2UI	CCWGG	2 cut(s)	839, 968
Bst4CI	ACNGT	5 cut(s)	273, 422, 879, 1075, 1136
Bst6I	CTCTTC	3 cut(s)	641, 1026, 1169
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	6 cut(s)	78, 181, 213, 303, 948, 1191
BstF5I	GGATG	1 cut(s)	179
BstKTI	GATC	5 cut(s)	55, 400, 510, 751, 933
BstMAI	GTCTC	2 cut(s)	976, 1204
BstMBI	GATC	5 cut(s)	52, 397, 507, 748, 930
BstMWI	GCNNNNNNNGC	4 cut(s)	525, 709, 1055, 1251
BstNI	CCWGG	2 cut(s)	839, 968
BstNSI	RCATGY	2 cut(s)	355, 363
BstSCI	CCNGG	2 cut(s)	837, 966
BstSLI	GKGCMC	2 cut(s)	145, 743
BstV1I	GCAGC	1 cut(s)	515
BstV2I	GAAGAC	1 cut(s)	590
BstX2I	RGATCY	2 cut(s)	52, 397
BstYI	RGATCY	2 cut(s)	52, 397
BstZ17I	GTATAC	1 cut(s)	345
BsuI	GTATCC	2 cut(s)	710, 1271
BsuRI	GGCC	2 cut(s)	542, 842
BtsCI	GGATG	1 cut(s)	179
BtsI	GCAGTG	3 cut(s)	122, 698, 1053
BtsIMutI	CAGTG	6 cut(s)	122, 269, 698, 751, 1053, 1188
Cac8I	GCNNGC	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	645, 768
CseI	GACGC	1 cut(s)	593
Csp6I	GTAC	2 cut(s)	264, 363
CviAII	CATG	5 cut(s)	100, 352, 360, 693, 962
CviQI	GTAC	2 cut(s)	264, 363
DdeI	CTNAG	6 cut(s)	78, 181, 213, 303, 948, 1191
DpnI	GATC	5 cut(s)	54, 399, 509, 750, 932
DpnII	GATC	5 cut(s)	52, 397, 507, 748, 930
DriI	GACNNNNNGTC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	3 cut(s)	641, 1026, 1169
Eam1105I	GACNNNNNGTC	1 cut(s)	157
EarI	CTCTTC	3 cut(s)	641, 1026, 1169
EciI	GGCGGA	1 cut(s)	1260
Eco147I	AGGCCT	1 cut(s)	842
Eco32I	GATATC	2 cut(s)	690, 1324
Eco47I	GGWCC	2 cut(s)	645, 768
Eco57I	CTGAAG	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	645
EcoRII	CCWGG	2 cut(s)	837, 966
EcoRV	GATATC	2 cut(s)	690, 1324
EcoT22I	ATGCAT	1 cut(s)	1343
Esp3I	CGTCTC	1 cut(s)	1204
FaeI	CATG	5 cut(s)	103, 355, 363, 696, 965
FaqI	GGGAC	2 cut(s)	229, 631
FatI	CATG	5 cut(s)	99, 351, 359, 692, 961
FbaI	TGATCA	1 cut(s)	748
FblI	GTMKAC	1 cut(s)	344
Fnu4HI	GCNGC	1 cut(s)	529
FokI	GGATG	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	529
FspBI	CTAG	5 cut(s)	311, 348, 513, 612, 1115
GluI	GCNGC	1 cut(s)	529
GsaI	CCCAGC	1 cut(s)	716
GsuI	CTGGAG	2 cut(s)	821, 1000
HaeIII	GGCC	2 cut(s)	542, 842
HapII	CCGG	1 cut(s)	1327
HgaI	GACGC	1 cut(s)	593
Hin1II	CATG	5 cut(s)	103, 355, 363, 696, 965
HinfI	GANTC	6 cut(s)	74, 464, 818, 1068, 1304, 1330
HpaII	CCGG	1 cut(s)	1327
HphI	GGTGA	2 cut(s)	434, 892
Hpy166II	GTNNAC	2 cut(s)	345, 698
Hpy188III	TCNNGA	5 cut(s)	863, 979, 1264, 1327, 1334
Hpy8I	GTNNAC	2 cut(s)	345, 698
HpyAV	CCTTC	8 cut(s)	43, 201, 659, 685, 1138, 1195, 1221, 1227
HpyCH4III	ACNGT	5 cut(s)	273, 422, 879, 1075, 1136
HpyCH4V	TGCA	5 cut(s)	626, 730, 824, 1341, 1348
HpyF10VI	GCNNNNNNNGC	4 cut(s)	525, 709, 1055, 1251
HpyF3I	CTNAG	6 cut(s)	78, 181, 213, 303, 948, 1191
Hsp92II	CATG	5 cut(s)	103, 355, 363, 696, 965
Kpn2I	TCCGGA	1 cut(s)	1326
Ksp22I	TGATCA	1 cut(s)	748
Kzo9I	GATC	5 cut(s)	52, 397, 507, 748, 930
LmnI	GCTCC	3 cut(s)	140, 963, 1063
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	3 cut(s)	164, 415, 1204
MaeI	CTAG	5 cut(s)	311, 348, 513, 612, 1115
MalI	GATC	5 cut(s)	54, 399, 509, 750, 932
MboI	GATC	5 cut(s)	52, 397, 507, 748, 930
MboII	GAAGA	9 cut(s)	186, 392, 450, 590, 628, 1002, 1013, 1186, 1331
MfeI	CAATTG	1 cut(s)	591
MflI	RGATCY	2 cut(s)	52, 397
MhlI	GDGCHC	3 cut(s)	145, 743, 1219
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	4 cut(s)	448, 591, 752, 781
MluNI	TGGCCA	1 cut(s)	542
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	1161
Mox20I	TGGCCA	1 cut(s)	542
Mph1103I	ATGCAT	1 cut(s)	1343
MroI	TCCGGA	1 cut(s)	1326
MscI	TGGCCA	1 cut(s)	542
MseI	TTAA	4 cut(s)	380, 522, 780, 788
MslI	CAYNNNNRTG	1 cut(s)	495
Msp20I	TGGCCA	1 cut(s)	542
MspI	CCGG	1 cut(s)	1327
MspR9I	CCNGG	2 cut(s)	839, 968
MunI	CAATTG	1 cut(s)	591
Mva1269I	GAATGC	1 cut(s)	1343
MvaI	CCWGG	2 cut(s)	839, 968
MwoI	GCNNNNNNNGC	4 cut(s)	525, 709, 1055, 1251
NdeII	GATC	5 cut(s)	52, 397, 507, 748, 930
NlaIII	CATG	5 cut(s)	103, 355, 363, 696, 965
NlaIV	GGNNCC	3 cut(s)	332, 647, 742
NsiI	ATGCAT	1 cut(s)	1343
NspI	RCATGY	2 cut(s)	355, 363
PaeI	GCATGC	1 cut(s)	355
PceI	AGGCCT	1 cut(s)	842
PciI	ACATGT	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	1 cut(s)	1219
PctI	GAATGC	1 cut(s)	1343
PfeI	GAWTC	5 cut(s)	464, 818, 1068, 1304, 1330
PflFI	GACNNNGTC	1 cut(s)	795
PflMI	CCANNNNNTGG	1 cut(s)	967
PfoI	TCCNGGA	1 cut(s)	966
PkrI	GCNGC	1 cut(s)	530
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PpuMI	RGGWCCY	1 cut(s)	645
PscI	ACATGT	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	645
Psp6I	CCWGG	2 cut(s)	837, 966
PspFI	CCCAGC	1 cut(s)	712
PspGI	CCWGG	2 cut(s)	837, 966
PspN4I	GGNNCC	3 cut(s)	332, 647, 742
PspPI	GGNCC	2 cut(s)	645, 768
PspPPI	RGGWCCY	1 cut(s)	645
PsuI	RGATCY	2 cut(s)	52, 397
PsyI	GACNNNGTC	1 cut(s)	795
RsaI	GTAC	2 cut(s)	265, 364
RsaNI	GTAC	2 cut(s)	264, 363
RseI	CAYNNNNRTG	1 cut(s)	495
SaqAI	TTAA	4 cut(s)	380, 522, 780, 788
SatI	GCNGC	1 cut(s)	529
Sau3AI	GATC	5 cut(s)	52, 397, 507, 748, 930
Sau96I	GGNCC	2 cut(s)	645, 768
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	839, 968
SduI	GDGCHC	3 cut(s)	145, 743, 1219
SfaNI	GCATC	3 cut(s)	164, 415, 1204
SinI	GGWCC	2 cut(s)	645, 768
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	2 cut(s)	704, 851
SmoI	CTYRAG	2 cut(s)	704, 851
SpeI	ACTAGT	2 cut(s)	512, 1114
SphI	GCATGC	1 cut(s)	355
Sse9I	AATT	4 cut(s)	448, 591, 752, 781
SseBI	AGGCCT	1 cut(s)	842
SsiI	CCGC	1 cut(s)	1245
SspMI	CTAG	5 cut(s)	311, 348, 513, 612, 1115
StuI	AGGCCT	1 cut(s)	842
StyD4I	CCNGG	2 cut(s)	837, 966
TaaI	ACNGT	5 cut(s)	273, 422, 879, 1075, 1136
TaqI	TCGA	2 cut(s)	1160, 1281
TaqII	GACCGA	1 cut(s)	785
TasI	AATT	4 cut(s)	448, 591, 752, 781
TatI	WGTACW	1 cut(s)	362
TfiI	GAWTC	5 cut(s)	464, 818, 1068, 1304, 1330
Tru1I	TTAA	4 cut(s)	380, 522, 780, 788
Tru9I	TTAA	4 cut(s)	380, 522, 780, 788
TscAI	CASTG	6 cut(s)	129, 276, 705, 751, 1060, 1195
TseI	GCWGC	1 cut(s)	528
TspDTI	ATGAA	5 cut(s)	48, 221, 392, 569, 628
TspRI	CASTG	6 cut(s)	129, 276, 705, 751, 1060, 1195
Tth111I	GACNNNGTC	1 cut(s)	795
Van91I	CCANNNNNTGG	1 cut(s)	967
VpaK11BI	GGWCC	2 cut(s)	645, 768
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	2 cut(s)	355, 363
XcmI	CCANNNNNNNNNTGG	1 cut(s)	705
XmiI	GTMKAC	1 cut(s)	344
XspI	CTAG	5 cut(s)	311, 348, 513, 612, 1115
Zsp2I	ATGCAT	1 cut(s)	1343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.