Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026063.1

Orthogroup ID

OG0006378

Physical Location & Seq

Genomic Coordinates Forward (+)

228 .. 1398

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026063.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgtcgaatctctcagagcagctccaagaaatcaaatccctaatttcttcacccaccaaatcaaacaagtcactcgcttactccactctatcacaccttcaacaacagtcctccgatgctctgattcaaacactcgcgctgagctctcagagccttctccgttggatcgtcgccgatattcaagacgacgacgaagaaattgcggcgcaggcattgaaatgtttgggttttatgatataccatccggccattgtttccgaaatttcagtggaggatgtgaagttggttttggaatcattggttaaactcattacaactacgaaaattaagtcggtttgtaatttgggagtgtggtgcatatctatacaacagctgagtgaaccacttttggctccccatttccattctcttttgcgcgcagtagttcatgccattgacaatcccattggttctctgtcaacaacttttgaggctattcaggctgtcattaagctagctactcttttaagtgagagcatgagagagttgtctcatatatgggcacctccaatatatagaagactgcttagctctgataagagagacagggatatgtcagaaaggtgtctgttgaagattagatccacaatcataccccctccaatagatctctccaaggtactcgctttctattctctcctctttttttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Rif1_N

Protein Analysis

230

Amino Acids

25.73

Weight (kDa)

6.3

Isoelectric Point (pI)

57.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006378)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02590 FvH4_1g02590 FvH4_1g02590
malus_domestica	MD08G1122800.v1.1 MD15G1166600.v1.1 MD15G1167400.v1.1
prunus_persica	Prupe.7G248700_v2.0.a1 Prupe.7G248700_v2.0.a1 Prupe.7G248700_v2.0.a1
pyrus_communis	pycom15g14880 pycom15g14920
rosa_chinensis	RchiOBHm_Chr2g0087621
rosa_laevigata	RLG00000015887
rosa_multiflora	Rmu_co8050730.1_g000001 Rmu_sc0002299.1_g000035 Rmu_sc0026063.1_g000001 Rmu_sc0026064.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153360
rosa_rugosa	Rorug01G0477200 Rorug01G0477300 Rorug01G0477400 Rorug01G0477500
rosa_samantha	Rh2AG031000 Rh2BG030500 Rh2CG030900 Rh2DG030800
rosa_wichuraiana	Rw2G002440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	541
AccII	CGCG	2 cut(s)	137, 417
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	2 cut(s)	173, 615
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	261
AfaI	GTAC	1 cut(s)	660
AgsI	TTSAA	5 cut(s)	101, 128, 182, 217, 613
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	6 cut(s)	22, 144, 373, 493, 497, 570
AluI	AGCT	6 cut(s)	22, 144, 373, 493, 497, 570
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	2 cut(s)	534, 576
AlwI	GGATC	2 cut(s)	173, 615
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	261
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
AspLEI	GCGC	4 cut(s)	139, 208, 417, 419
AsuHPI	GGTGA	1 cut(s)	42
AsuNHI	GCTAGC	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	544
BanI	GGYRCC	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	565
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	249
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BcoDI	GTCTC	2 cut(s)	534, 576
BfaI	CTAG	1 cut(s)	494
BglII	AGATCT	1 cut(s)	646
BisI	GCNGC	2 cut(s)	20, 204
BlpI	GCTNAGC	2 cut(s)	140, 566
BlsI	GCNGC	2 cut(s)	21, 205
BmiI	GGNNCC	2 cut(s)	393, 543
BmsI	GCATC	1 cut(s)	106
BmtI	GCTAGC	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	565
Bpu1102I	GCTNAGC	2 cut(s)	140, 566
BsaJI	CCNNGG	1 cut(s)	654
BseDI	CCNNGG	1 cut(s)	654
BseGI	GGATG	2 cut(s)	241, 280
BseMII	CTCAG	4 cut(s)	27, 131, 161, 365
BsePI	GCGCGC	1 cut(s)	415
BseRI	GAGGAG	1 cut(s)	668
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	1 cut(s)	31
Bsh1236I	CGCG	2 cut(s)	137, 417
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	541
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	245
BsmAI	GTCTC	2 cut(s)	534, 576
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	2 cut(s)	146, 544
Bsp143I	GATC	3 cut(s)	165, 620, 646
Bsp1720I	GCTNAGC	2 cut(s)	140, 566
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	4 cut(s)	26, 132, 160, 366
BspFNI	CGCG	2 cut(s)	137, 417
BspLI	GGNNCC	2 cut(s)	393, 543
BspOI	GCTAGC	1 cut(s)	497
BspPI	GGATC	2 cut(s)	173, 615
BspT107I	GGYRCC	1 cut(s)	541
BssECI	CCNNGG	1 cut(s)	654
BssHII	GCGCGC	1 cut(s)	415
BssMI	GATC	3 cut(s)	165, 620, 646
BssT1I	CCWWGG	1 cut(s)	654
Bst4CI	ACNGT	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	210, 417, 495
BstDEI	CTNAG	5 cut(s)	13, 140, 147, 374, 566
BstF5I	GGATG	2 cut(s)	241, 280
BstFNI	CGCG	2 cut(s)	137, 417
BstHHI	GCGC	4 cut(s)	139, 208, 417, 419
BstKTI	GATC	3 cut(s)	168, 623, 649
BstMAI	GTCTC	2 cut(s)	534, 576
BstMBI	GATC	3 cut(s)	165, 620, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 209, 479
BstSLI	GKGCMC	1 cut(s)	544
BstUI	CGCG	2 cut(s)	137, 417
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	565
BstX2I	RGATCY	2 cut(s)	620, 646
BstYI	RGATCY	2 cut(s)	620, 646
BsuRI	GGCC	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	241, 280
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	3 cut(s)	210, 417, 495
CfoI	GCGC	4 cut(s)	139, 208, 417, 419
Csp6I	GTAC	1 cut(s)	659
CviAII	CATG	2 cut(s)	428, 517
CviQI	GTAC	1 cut(s)	659
DdeI	CTNAG	5 cut(s)	13, 140, 147, 374, 566
DpnI	GATC	3 cut(s)	167, 622, 648
DpnII	GATC	3 cut(s)	165, 620, 646
EaeI	YGGCCR	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	654
Eco24I	GRGCYC	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	654
EcoT38I	GRGCYC	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	654
FaeI	CATG	2 cut(s)	431, 520
FatI	CATG	2 cut(s)	427, 516
Fnu4HI	GCNGC	2 cut(s)	20, 204
FokI	GGATG	2 cut(s)	228, 287
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	20, 204
FspBI	CTAG	1 cut(s)	494
GlaI	GCGC	4 cut(s)	138, 207, 416, 418
GluI	GCNGC	2 cut(s)	20, 204
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	1 cut(s)	245
HhaI	GCGC	4 cut(s)	139, 208, 417, 419
Hin1II	CATG	2 cut(s)	431, 520
Hin6I	GCGC	4 cut(s)	137, 206, 415, 417
HinP1I	GCGC	4 cut(s)	137, 206, 415, 417
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HinfI	GANTC	3 cut(s)	7, 124, 293
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	2 cut(s)	380, 459
Hpy188I	TCNGA	7 cut(s)	16, 115, 123, 150, 259, 574, 598
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	2 cut(s)	380, 459
Hpy99I	CGWCG	3 cut(s)	173, 191, 194
HpyAV	CCTTC	2 cut(s)	107, 164
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	357
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 209, 479
HpyF3I	CTNAG	5 cut(s)	13, 140, 147, 374, 566
Hsp92II	CATG	2 cut(s)	431, 520
HspAI	GCGC	4 cut(s)	137, 206, 415, 417
Kzo9I	GATC	3 cut(s)	165, 620, 646
LmnI	GCTCC	2 cut(s)	27, 397
LpnPI	CCDG	4 cut(s)	194, 258, 464, 571
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	494
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	3 cut(s)	167, 622, 648
MboI	GATC	3 cut(s)	165, 620, 646
MboII	GAAGA	4 cut(s)	39, 206, 570, 625
MflI	RGATCY	2 cut(s)	620, 646
MhlI	GDGCHC	2 cut(s)	146, 544
MluCI	AATT	5 cut(s)	42, 198, 261, 324, 340
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	6 cut(s)	121, 265, 463, 555, 648, 689
MseI	TTAA	4 cut(s)	303, 327, 489, 506
MslI	CAYNNNNRTG	1 cut(s)	217
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	1 cut(s)	245
MvnI	CGCG	2 cut(s)	137, 417
MwoI	GCNNNNNNNGC	3 cut(s)	150, 209, 479
NdeII	GATC	3 cut(s)	165, 620, 646
NheI	GCTAGC	1 cut(s)	493
NlaIII	CATG	2 cut(s)	431, 520
NlaIV	GGNNCC	2 cut(s)	393, 543
NmuCI	GTSAC	1 cut(s)	69
PauI	GCGCGC	1 cut(s)	415
PfeI	GAWTC	3 cut(s)	7, 124, 293
PkrI	GCNGC	2 cut(s)	21, 205
Psp124BI	GAGCTC	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	393, 543
PsuI	RGATCY	2 cut(s)	620, 646
PteI	GCGCGC	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	660
RsaNI	GTAC	1 cut(s)	659
RseI	CAYNNNNRTG	1 cut(s)	217
SacI	GAGCTC	1 cut(s)	146
SaqAI	TTAA	4 cut(s)	303, 327, 489, 506
SatI	GCNGC	2 cut(s)	20, 204
Sau3AI	GATC	3 cut(s)	165, 620, 646
SduI	GDGCHC	2 cut(s)	146, 544
SfaNI	GCATC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	217
Sse9I	AATT	5 cut(s)	42, 198, 261, 324, 340
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	1 cut(s)	494
SstI	GAGCTC	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	654
TaaI	ACNGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	5
TasI	AATT	5 cut(s)	42, 198, 261, 324, 340
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	3 cut(s)	7, 124, 293
Tru1I	TTAA	4 cut(s)	303, 327, 489, 506
Tru9I	TTAA	4 cut(s)	303, 327, 489, 506
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	1 cut(s)	416
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	273
XapI	RAATTY	1 cut(s)	261
XspI	CTAG	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.