Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0010804

Physical Location & Seq

Genomic Coordinates Reverse (-)

11683978 .. 11686598

Gene Structure 2621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1124700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTATTCTGGGTCTTTGGATATGGTTCACTTGTGTGGAACCCCGGATTCGAGTACGACGAGAAAGTGATAGGTTACATCAAGGACTACCGGCGTGTATTTGATCTTGCCTGCATAGATCACAGAGGTACCCCTGAGCACCCTGCTCGGACTTGCACTTTGGAGTACCAAGAAGGAGCTATTTGCTGGGGTGCTGCGTATTCTGTACGCGGAGGGCCGGAAAGGGAGAAACTGGCAATGGAGTACCTGGAAAGGAGAGAATGTGAGTATGATTCAAAGACTCTCGTCGACTTTTATAAGGAAGGGGAGTTCTCCCAGTCTGAGCCATTTTTGACAGGAGTTATTGTTTTCACGTCGACTCCAGACAAAGAATCGAACAAGTATTATCTGGGTCCTGCTCCATTGGAGGATATGGCAAGGCAAATTGCAACTGCTTCTGGGCCCTGCGGAAACAATAGAGACTATCTCTTTCTGTTGGAGAAGGCTTTGTTCGATATAGGCCATGAAGAGGACTATGTGATAGAGCTAGCAAATGAGGTGAGGAAGGTTCTTGGAATAGCTGGTAAAGGATTTCCGATGGAGAAGAAATTGGCCGGGCCAACCAACCTTCCGCTCAAGTCCAACATCCCGGCCCTCCAACTGCATCCGCTCCCGGAAGCCATCGCCATGGACTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003839 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010035 GO:0010038 GO:0010288 GO:0016829 GO:0016840 GO:0016842 GO:0034641 GO:0042219 GO:0042221 GO:0043171 GO:0043603 GO:0044237 GO:0044248 GO:0044273 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0051187 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ChaC

Protein Analysis

226

Amino Acids

25.42

Weight (kDa)

4.92

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ChaC	PF04752	3 - 182	8.9e-44	ChaC-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31290 AT5G26220 AT5G26220
fragaria_vesca	FvH4_2g36490 FvH4_3g36120
malus_domestica	MD08G1124700.v1.1 MD15G1104100.v1.1
prunus_persica	Prupe.1G456300_v2.0.a1
pyrus_communis	pycom08g10340 pycom15g09450 pycom15g09490
rosa_chinensis	RchiOBHm_Chr6g0305381
rosa_laevigata	RLG00000010895
rosa_multiflora	Rmu_co8139608.1_g000001 Rmu_sc0002782.1_g000008
rosa_roxburghii	Rroxscaffold_7G00162860
rosa_rugosa	Rorug06G0340000
rosa_samantha	Rh6BG449800 Rh6CG465800
rosa_wichuraiana	Rw6G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
Acc65I	GGTACC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	128
AccBSI	CCGCTC	2 cut(s)	613, 649
AccI	GTMKAC	2 cut(s)	288, 356
AccII	CGCG	1 cut(s)	210
AciI	CCGC	4 cut(s)	210, 447, 611, 647
AcoI	YGGCCR	1 cut(s)	591
AfaI	GTAC	5 cut(s)	56, 130, 167, 207, 245
AfiI	CCNNNNNNNGG	1 cut(s)	508
AgsI	TTSAA	1 cut(s)	276
AjiI	CACGTC	1 cut(s)	354
AjnI	CCWGG	1 cut(s)	246
AleI	CACNNNNGTG	1 cut(s)	34
AloI	GAACNNNNNNTCC	2 cut(s)	293, 325
AluBI	AGCT	3 cut(s)	179, 526, 560
AluI	AGCT	3 cut(s)	179, 526, 560
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	453
AoxI	GGCC	6 cut(s)	215, 440, 499, 591, 596, 630
ApaI	GGGCCC	1 cut(s)	444
ApeKI	GCWGC	1 cut(s)	194
ArsI	GACNNNNNNTTYG	2 cut(s)	142, 174
Asp718I	GGTACC	1 cut(s)	128
AspS9I	GGNCC	6 cut(s)	215, 392, 440, 441, 596, 631
AsuC2I	CCSGG	4 cut(s)	45, 595, 629, 653
AsuHPI	GGTGA	1 cut(s)	550
AsuNHI	GCTAGC	1 cut(s)	526
AvaII	GGWCC	1 cut(s)	392
BaeGI	GKGCMC	1 cut(s)	444
BaeI	ACNNNNGTAYC	2 cut(s)	112, 145
BanI	GGYRCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	2 cut(s)	571, 668
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	1 cut(s)	248
BcnI	CCSGG	4 cut(s)	45, 595, 629, 653
BcoDI	GTCTC	1 cut(s)	453
BfaI	CTAG	1 cut(s)	527
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	5 cut(s)	45, 248, 595, 629, 653
Bme18I	GGWCC	1 cut(s)	392
BmgBI	CACGTC	1 cut(s)	354
BmgT120I	GGNCC	6 cut(s)	215, 392, 440, 441, 596, 631
BmiI	GGNNCC	4 cut(s)	41, 130, 393, 442
BmrFI	CCNGG	5 cut(s)	45, 248, 595, 629, 653
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	652
BmtI	GCTAGC	1 cut(s)	530
BmuI	ACTGGG	1 cut(s)	310
BoxI	GACNNNNGTC	1 cut(s)	284
BplI	GAGNNNNNCTC	2 cut(s)	450, 482
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	4 cut(s)	45, 595, 629, 653
BsaJI	CCNNGG	2 cut(s)	43, 666
BsaXI	ACNNNNNCTCC	6 cut(s)	247, 277, 330, 343, 360, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	2 cut(s)	237, 316
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	2 cut(s)	43, 666
BseGI	GGATG	2 cut(s)	624, 643
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	2 cut(s)	126, 312
BseNI	ACTGG	2 cut(s)	237, 316
BseSI	GKGCMC	1 cut(s)	444
BseXI	GCAGC	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	6 cut(s)	217, 442, 501, 593, 598, 632
BshNI	GGYRCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	6 cut(s)	45, 91, 218, 594, 629, 653
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmAI	GTCTC	1 cut(s)	453
BsnI	GGCC	6 cut(s)	217, 442, 501, 593, 598, 632
Bsp120I	GGGCCC	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	141, 444
Bsp143I	GATC	2 cut(s)	103, 118
Bsp19I	CCATGG	1 cut(s)	666
BspACI	CCGC	4 cut(s)	210, 447, 611, 647
BspANI	GGCC	6 cut(s)	217, 442, 501, 593, 598, 632
BspCNI	CTCAG	2 cut(s)	127, 313
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	4 cut(s)	41, 130, 393, 442
BspOI	GCTAGC	1 cut(s)	530
BspT107I	GGYRCC	1 cut(s)	128
BsrBI	CCGCTC	2 cut(s)	613, 649
BsrDI	GCAATG	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	237, 316
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	43, 666
BssMI	GATC	2 cut(s)	103, 118
BssT1I	CCWWGG	1 cut(s)	666
Bst2UI	CCWGG	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	501
BstC8I	GCNNGC	2 cut(s)	112, 528
BstDEI	CTNAG	2 cut(s)	135, 321
BstDSI	CCRYGG	1 cut(s)	666
BstF5I	GGATG	2 cut(s)	624, 643
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	2 cut(s)	106, 121
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	2 cut(s)	103, 118
BstNI	CCWGG	1 cut(s)	248
BstPAI	GACNNNNGTC	1 cut(s)	284
BstSCI	CCNGG	5 cut(s)	43, 246, 593, 627, 651
BstSLI	GKGCMC	1 cut(s)	444
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	667
BsuRI	GGCC	6 cut(s)	217, 442, 501, 593, 598, 632
BtgI	CCRYGG	1 cut(s)	666
BtgZI	GCGATG	1 cut(s)	646
BtrI	CACGTC	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	624, 643
Cac8I	GCNNGC	2 cut(s)	112, 528
Cfr10I	RCCGGY	1 cut(s)	90
Cfr13I	GGNCC	6 cut(s)	215, 392, 440, 441, 596, 631
Csp6I	GTAC	5 cut(s)	55, 129, 166, 206, 244
CviAII	CATG	2 cut(s)	503, 667
CviQI	GTAC	5 cut(s)	55, 129, 166, 206, 244
DdeI	CTNAG	2 cut(s)	135, 321
DpnI	GATC	2 cut(s)	105, 120
DpnII	GATC	2 cut(s)	103, 118
EaeI	YGGCCR	1 cut(s)	591
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco130I	CCWWGG	1 cut(s)	666
Eco24I	GRGCYC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	392
EcoO109I	RGGNCCY	2 cut(s)	392, 441
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	666
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	666
FaeI	CATG	2 cut(s)	506, 670
FaiI	YATR	9 cut(s)	24, 116, 270, 297, 413, 497, 504, 516, 668
FatI	CATG	2 cut(s)	502, 666
FblI	GTMKAC	2 cut(s)	288, 356
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	2 cut(s)	611, 630
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	527
GluI	GCNGC	1 cut(s)	195
GsaI	CCCAGC	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	6 cut(s)	217, 442, 501, 593, 598, 632
HapII	CCGG	6 cut(s)	45, 91, 218, 594, 629, 653
Hin1II	CATG	2 cut(s)	506, 670
HincII	GTYRAC	2 cut(s)	289, 357
HindII	GTYRAC	2 cut(s)	289, 357
HinfI	GANTC	6 cut(s)	48, 272, 280, 358, 371, 671
HpaII	CCGG	6 cut(s)	45, 91, 218, 594, 629, 653
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	3 cut(s)	29, 289, 357
Hpy188I	TCNGA	3 cut(s)	150, 322, 576
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	3 cut(s)	29, 289, 357
Hpy99I	CGWCG	3 cut(s)	62, 290, 358
HpyAV	CCTTC	5 cut(s)	167, 296, 475, 538, 617
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	4 cut(s)	114, 156, 428, 643
HpyF3I	CTNAG	2 cut(s)	135, 321
HpySE526I	ACGT	1 cut(s)	353
Hsp92II	CATG	2 cut(s)	506, 670
KpnI	GGTACC	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	103, 118
LmnI	GCTCC	3 cut(s)	176, 403, 654
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	1 cut(s)	527
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	2 cut(s)	105, 120
MbiI	CCGCTC	2 cut(s)	613, 649
MboI	GATC	2 cut(s)	103, 118
MboII	GAAGA	2 cut(s)	518, 595
MhlI	GDGCHC	2 cut(s)	141, 444
MluCI	AATT	2 cut(s)	423, 587
MlyI	GAGTC	3 cut(s)	274, 352, 665
MmeI	TCCRAC	3 cut(s)	456, 645, 661
MnlI	CCTC	7 cut(s)	119, 206, 400, 502, 529, 534, 644
MslI	CAYNNNNRTG	2 cut(s)	34, 665
MspI	CCGG	6 cut(s)	45, 91, 218, 594, 629, 653
MspR9I	CCNGG	5 cut(s)	45, 248, 595, 629, 653
MvaI	CCWGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	210
NciI	CCSGG	4 cut(s)	45, 595, 629, 653
NcoI	CCATGG	1 cut(s)	666
NdeII	GATC	2 cut(s)	103, 118
NheI	GCTAGC	1 cut(s)	526
NlaIII	CATG	2 cut(s)	506, 670
NlaIV	GGNNCC	4 cut(s)	41, 130, 393, 442
OliI	CACNNNNGTG	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	3 cut(s)	48, 272, 371
PfoI	TCCNGGA	1 cut(s)	651
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	3 cut(s)	274, 352, 665
PpsI	GAGTC	3 cut(s)	274, 352, 665
PpuMI	RGGWCCY	1 cut(s)	392
PshAI	GACNNNNGTC	1 cut(s)	284
PsiI	TTATAA	1 cut(s)	297
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	4 cut(s)	41, 130, 393, 442
PspOMI	GGGCCC	1 cut(s)	440
PspPI	GGNCC	6 cut(s)	215, 392, 440, 441, 596, 631
PspPPI	RGGWCCY	1 cut(s)	392
RsaI	GTAC	5 cut(s)	56, 130, 167, 207, 245
RsaNI	GTAC	5 cut(s)	55, 129, 166, 206, 244
RseI	CAYNNNNRTG	2 cut(s)	34, 665
SalI	GTCGAC	2 cut(s)	287, 355
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	103, 118
Sau96I	GGNCC	6 cut(s)	215, 392, 440, 441, 596, 631
SchI	GAGTC	3 cut(s)	274, 352, 665
ScrFI	CCNGG	5 cut(s)	45, 248, 595, 629, 653
SduI	GDGCHC	2 cut(s)	141, 444
SfaNI	GCATC	1 cut(s)	652
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	2 cut(s)	34, 665
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	2 cut(s)	423, 587
SsiI	CCGC	4 cut(s)	210, 447, 611, 647
SspMI	CTAG	1 cut(s)	527
StyD4I	CCNGG	5 cut(s)	43, 246, 593, 627, 651
StyI	CCWWGG	1 cut(s)	666
TaiI	ACGT	1 cut(s)	356
TaqI	TCGA	5 cut(s)	51, 288, 356, 374, 492
TasI	AATT	2 cut(s)	423, 587
TfiI	GAWTC	3 cut(s)	48, 272, 371
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	392
XmiI	GTMKAC	2 cut(s)	288, 356
XspI	CTAG	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.