Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010804

Physical Location & Seq

Genomic Coordinates Reverse (-)

38272594 .. 38275608

Gene Structure 3015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G456300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTATTTTGGGTTTTTGGATATGGTTCACTTGTGTGGAACCCTGGTTTTGAATACGACGAGAAAGTGATAGGTTACATCAAGGACTACAGGCGTGTTTTTGATGTTGCATGCATCGATCACAGAGGTACCCCTGAGCACCCTGCTCGGACTTGCTCTTTGGAGTACCAAAAAGGAGCTATTTGCTGGGGTGCTGCTTATTCTGTACGCGGAGGGCCTGAAAGGGAAAAACTGGCAATGGAGTACTTGGAAAGGAGAGAATGTGAATATGATTTAAAGACCCTTGTGAACTTTTATAAGGAAGGGGACTTCTCTGAGTCTGAGCCTTCCTTGACAGGAGTGATTGTTTTCACATCCACTCCAGACAAGGAATCAAACAAGTATTATCTGGGTCCTGCTCCATTGGAGGATATGGCAAGGCAAATCGCCACTGCATTTGGGCCCTGCGGAAACAATAGAGACTATCTCTTTCTATTGGAGAAGGCTATGTTTGATATTGACCATGAAGATGACTATGTGATTGAGCTTGCAAATGAGGTGAGGAAGGTACTTGGAACTGGGGGGAATGGAATTCTGAAGGAGAAGAAAATGGCTGGTCCACCCCACCTCCCACTGAAGTCCCACATCCAAGCCCTTCAACTGCATCCACTTCCCGAAGCCATCGCCATGGACTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003839 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010035 GO:0010038 GO:0010288 GO:0016829 GO:0016840 GO:0016842 GO:0034641 GO:0042219 GO:0042221 GO:0043171 GO:0043603 GO:0044237 GO:0044248 GO:0044273 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0051187 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ChaC

Protein Analysis

226

Amino Acids

25.5

Weight (kDa)

5.13

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31290 AT5G26220 AT5G26220
fragaria_vesca	FvH4_2g36490 FvH4_3g36120
malus_domestica	MD08G1124700.v1.1 MD15G1104100.v1.1
prunus_persica	Prupe.1G456300_v2.0.a1
pyrus_communis	pycom08g10340 pycom15g09450 pycom15g09490
rosa_chinensis	RchiOBHm_Chr6g0305381
rosa_laevigata	RLG00000010895
rosa_multiflora	Rmu_co8139608.1_g000001 Rmu_sc0002782.1_g000008
rosa_roxburghii	Rroxscaffold_7G00162860
rosa_rugosa	Rorug06G0340000
rosa_samantha	Rh6BG449800 Rh6CG465800
rosa_wichuraiana	Rw6G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
Acc65I	GGTACC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	128
AccII	CGCG	1 cut(s)	210
AciI	CCGC	2 cut(s)	210, 447
AcsI	RAATTY	1 cut(s)	570
AcuI	CTGAAG	2 cut(s)	596, 635
AfaI	GTAC	5 cut(s)	130, 167, 207, 245, 549
AgsI	TTSAA	2 cut(s)	53, 638
AjnI	CCWGG	1 cut(s)	43
AleI	CACNNNNGTG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	179, 526
AluI	AGCT	2 cut(s)	179, 526
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	453
AoxI	GGCC	2 cut(s)	215, 440
ApaI	GGGCCC	1 cut(s)	444
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	570
ArsI	GACNNNNNNTTYG	2 cut(s)	142, 174
Asp718I	GGTACC	1 cut(s)	128
AspS9I	GGNCC	5 cut(s)	215, 392, 440, 441, 596
AsuHPI	GGTGA	1 cut(s)	550
AvaII	GGWCC	2 cut(s)	392, 596
BaeGI	GKGCMC	1 cut(s)	444
BaeI	ACNNNNGTAYC	2 cut(s)	112, 145
BanI	GGYRCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	668
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	453
BfmI	CTRYAG	1 cut(s)	88
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BmcAI	AGTACT	1 cut(s)	245
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	2 cut(s)	392, 596
BmgT120I	GGNCC	5 cut(s)	215, 392, 440, 441, 596
BmiI	GGNNCC	4 cut(s)	41, 130, 393, 442
BmrFI	CCNGG	1 cut(s)	45
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	2 cut(s)	123, 652
BmuI	ACTGGG	1 cut(s)	567
BplI	GAGNNNNNCTC	2 cut(s)	450, 482
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	135
Bsa29I	ATCGAT	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	43, 666
BsaXI	ACNNNNNCTCC	8 cut(s)	247, 277, 330, 343, 360, 373, 591, 621
Bse1I	ACTGG	2 cut(s)	237, 562
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	43, 666
BseGI	GGATG	3 cut(s)	353, 624, 643
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	3 cut(s)	126, 306, 312
BseNI	ACTGG	2 cut(s)	237, 562
BseSI	GKGCMC	1 cut(s)	444
BseXI	GCAGC	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	217, 442
BshNI	GGYRCC	1 cut(s)	128
BshVI	ATCGAT	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	141
BslFI	GGGAC	2 cut(s)	320, 604
BsmAI	GTCTC	1 cut(s)	453
BsmFI	GGGAC	2 cut(s)	320, 604
BsnI	GGCC	2 cut(s)	217, 442
Bsp120I	GGGCCC	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	141, 444
Bsp143I	GATC	1 cut(s)	118
Bsp19I	CCATGG	1 cut(s)	666
BspACI	CCGC	2 cut(s)	210, 447
BspANI	GGCC	2 cut(s)	217, 442
BspCNI	CTCAG	3 cut(s)	127, 307, 313
BspDI	ATCGAT	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	4 cut(s)	41, 130, 393, 442
BspT107I	GGYRCC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	2 cut(s)	237, 562
BssECI	CCNNGG	2 cut(s)	43, 666
BssMI	GATC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	666
Bst2UI	CCWGG	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	112, 528
BstDEI	CTNAG	3 cut(s)	135, 315, 321
BstDSI	CCRYGG	1 cut(s)	666
BstF5I	GGATG	3 cut(s)	353, 624, 643
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	1 cut(s)	118
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	88
BstSLI	GKGCMC	1 cut(s)	444
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	667
Bsu15I	ATCGAT	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	217, 442
BsuTUI	ATCGAT	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	666
BtgZI	GCGATG	1 cut(s)	646
BtsCI	GGATG	3 cut(s)	353, 624, 643
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	429, 611
Cac8I	GCNNGC	2 cut(s)	112, 528
Cfr13I	GGNCC	5 cut(s)	215, 392, 440, 441, 596
ClaI	ATCGAT	1 cut(s)	117
Csp6I	GTAC	5 cut(s)	129, 166, 206, 244, 548
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	3 cut(s)	111, 503, 667
CviJI	RGCY	9 cut(s)	179, 217, 325, 442, 485, 526, 593, 632, 659
CviKI_1	RGCY	9 cut(s)	179, 217, 325, 442, 485, 526, 593, 632, 659
CviQI	GTAC	5 cut(s)	129, 166, 206, 244, 548
DdeI	CTNAG	3 cut(s)	135, 315, 321
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
DraI	TTTAAA	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	666
Eco24I	GRGCYC	1 cut(s)	444
Eco47I	GGWCC	2 cut(s)	392, 596
Eco57I	CTGAAG	2 cut(s)	596, 635
EcoO109I	RGGNCCY	3 cut(s)	215, 392, 441
EcoRI	GAATTC	1 cut(s)	570
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	666
EcoT22I	ATGCAT	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	666
FaeI	CATG	3 cut(s)	114, 506, 670
FaiI	YATR	9 cut(s)	24, 112, 270, 297, 413, 488, 504, 516, 668
FaqI	GGGAC	2 cut(s)	320, 604
FatI	CATG	3 cut(s)	110, 502, 666
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	3 cut(s)	340, 611, 630
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
GsaI	CCCAGC	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	217, 442
Hin1II	CATG	3 cut(s)	114, 506, 670
HinfI	GANTC	3 cut(s)	317, 371, 671
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	3 cut(s)	29, 289, 599
Hpy188I	TCNGA	4 cut(s)	150, 316, 322, 576
Hpy188III	TCNNGA	2 cut(s)	362, 653
Hpy8I	GTNNAC	3 cut(s)	29, 289, 599
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	6 cut(s)	296, 336, 475, 538, 571, 644
HpyCH4V	TGCA	5 cut(s)	110, 114, 434, 530, 643
HpyF3I	CTNAG	3 cut(s)	135, 315, 321
Hsp92II	CATG	3 cut(s)	114, 506, 670
KpnI	GGTACC	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	2 cut(s)	176, 403
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	2 cut(s)	123, 652
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	2 cut(s)	518, 595
MhlI	GDGCHC	2 cut(s)	141, 444
MluCI	AATT	1 cut(s)	570
MlyI	GAGTC	2 cut(s)	326, 665
MnlI	CCTC	6 cut(s)	119, 206, 400, 529, 534, 617
Mph1103I	ATGCAT	1 cut(s)	116
MseI	TTAA	1 cut(s)	275
MslI	CAYNNNNRTG	3 cut(s)	34, 507, 665
MspR9I	CCNGG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	666
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	3 cut(s)	114, 506, 670
NlaIV	GGNNCC	4 cut(s)	41, 130, 393, 442
NsiI	ATGCAT	1 cut(s)	116
NspI	RCATGY	1 cut(s)	114
OliI	CACNNNNGTG	1 cut(s)	34
PaeI	GCATGC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	2 cut(s)	325, 665
PpsI	GAGTC	2 cut(s)	325, 665
PpuMI	RGGWCCY	1 cut(s)	392
PsiI	TTATAA	1 cut(s)	297
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	4 cut(s)	41, 130, 393, 442
PspOMI	GGGCCC	1 cut(s)	440
PspPI	GGNCC	5 cut(s)	215, 392, 440, 441, 596
PspPPI	RGGWCCY	1 cut(s)	392
RsaI	GTAC	5 cut(s)	130, 167, 207, 245, 549
RsaNI	GTAC	5 cut(s)	129, 166, 206, 244, 548
RseI	CAYNNNNRTG	3 cut(s)	34, 507, 665
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	5 cut(s)	215, 392, 440, 441, 596
ScaI	AGTACT	1 cut(s)	245
SchI	GAGTC	2 cut(s)	326, 665
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	2 cut(s)	141, 444
SetI	ASST	7 cut(s)	76, 130, 181, 528, 540, 549, 609
SfaNI	GCATC	2 cut(s)	123, 652
SfcI	CTRYAG	1 cut(s)	88
SinI	GGWCC	2 cut(s)	392, 596
SmiMI	CAYNNNNRTG	3 cut(s)	34, 507, 665
SphI	GCATGC	1 cut(s)	114
Sse9I	AATT	1 cut(s)	570
SsiI	CCGC	2 cut(s)	210, 447
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	666
TaqI	TCGA	1 cut(s)	117
TasI	AATT	1 cut(s)	570
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	2 cut(s)	436, 618
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	519
TspRI	CASTG	2 cut(s)	436, 618
VpaK11BI	GGWCC	2 cut(s)	392, 596
XapI	RAATTY	1 cut(s)	570
XceI	RCATGY	1 cut(s)	114
ZrmI	AGTACT	1 cut(s)	245
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.