Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010804

Physical Location & Seq

Genomic Coordinates Reverse (-)

6171203 .. 6171418

Gene Structure 216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g09450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGTTAATACTGAGTAGAGAATTTCTGACATGGGCAGGCCATGAAGAGGACTATGTGATAGAGCTAGCAAATGAGGTGAGGAAGGTTCTTGGGATAGCCGGAAAAGGATTTCCAAAGGAGAAGAAGTTGGCCGGGCCAACCCACCTCCCGCTTAAGTCCAACATCCCGGCCCTCCAACTGCGTCCGCTGCCAGAAGCCATCGCCATGGACTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003839 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010035 GO:0010038 GO:0010288 GO:0016829 GO:0016840 GO:0016842 GO:0034641 GO:0042219 GO:0042221 GO:0043171 GO:0043603 GO:0044237 GO:0044248 GO:0044273 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0051187 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ChaC

Protein Analysis

72

Amino Acids

7.86

Weight (kDa)

6.72

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31290 AT5G26220 AT5G26220
fragaria_vesca	FvH4_2g36490 FvH4_3g36120
malus_domestica	MD08G1124700.v1.1 MD15G1104100.v1.1
prunus_persica	Prupe.1G456300_v2.0.a1
pyrus_communis	pycom08g10340 pycom15g09450 pycom15g09490
rosa_chinensis	RchiOBHm_Chr6g0305381
rosa_laevigata	RLG00000010895
rosa_multiflora	Rmu_co8139608.1_g000001 Rmu_sc0002782.1_g000008
rosa_roxburghii	Rroxscaffold_7G00162860
rosa_rugosa	Rorug06G0340000
rosa_samantha	Rh6BG449800 Rh6CG465800
rosa_wichuraiana	Rw6G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	149, 185
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	46
AflII	CTTAAG	1 cut(s)	152
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AoxI	GGCC	4 cut(s)	37, 129, 134, 168
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	134, 169
AsuC2I	CCSGG	2 cut(s)	133, 167
AsuHPI	GGTGA	1 cut(s)	88
AsuNHI	GCTAGC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	206
BcnI	CCSGG	2 cut(s)	133, 167
BfaI	CTAG	1 cut(s)	65
BfrI	CTTAAG	1 cut(s)	152
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	2 cut(s)	133, 167
BmgT120I	GGNCC	2 cut(s)	134, 169
BmrFI	CCNGG	2 cut(s)	133, 167
BmtI	GCTAGC	1 cut(s)	68
BpuMI	CCSGG	2 cut(s)	133, 167
BsaJI	CCNNGG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	174
BshFI	GGCC	4 cut(s)	39, 131, 136, 170
BsiSI	CCGG	3 cut(s)	99, 132, 167
BslI	CCNNNNNNNGG	1 cut(s)	46
BsnI	GGCC	4 cut(s)	39, 131, 136, 170
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	2 cut(s)	149, 185
BspANI	GGCC	4 cut(s)	39, 131, 136, 170
BspOI	GCTAGC	1 cut(s)	68
BspTI	CTTAAG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	39
BstAFI	CTTAAG	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	37, 66
BstDEI	CTNAG	1 cut(s)	11
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	131, 165
BstV1I	GCAGC	1 cut(s)	174
BstXI	CCANNNNNNTGG	1 cut(s)	205
BsuRI	GGCC	4 cut(s)	39, 131, 136, 170
BtgI	CCRYGG	1 cut(s)	204
BtgZI	GCGATG	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	162
Cac8I	GCNNGC	2 cut(s)	37, 66
Cfr13I	GGNCC	2 cut(s)	134, 169
CseI	GACGC	1 cut(s)	170
CviAII	CATG	3 cut(s)	30, 41, 205
CviJI	RGCY	7 cut(s)	39, 64, 98, 131, 136, 170, 197
CviKI_1	RGCY	7 cut(s)	39, 64, 98, 131, 136, 170, 197
DdeI	CTNAG	1 cut(s)	11
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	33, 44, 208
FaiI	YATR	4 cut(s)	31, 42, 54, 206
FatI	CATG	3 cut(s)	29, 40, 204
FauI	CCCGC	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	1 cut(s)	188
HaeIII	GGCC	4 cut(s)	39, 131, 136, 170
HapII	CCGG	3 cut(s)	99, 132, 167
HgaI	GACGC	1 cut(s)	170
Hin1II	CATG	3 cut(s)	33, 44, 208
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	3 cut(s)	99, 132, 167
HphI	GGTGA	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	33, 44, 208
LpnPI	CCDG	5 cut(s)	21, 112, 145, 180, 204
Lsp1109I	GCAGC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	65
MboII	GAAGA	2 cut(s)	56, 133
MluCI	AATT	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	2 cut(s)	183, 199
MnlI	CCTC	5 cut(s)	40, 67, 72, 155, 182
MseI	TTAA	2 cut(s)	5, 153
MslI	CAYNNNNRTG	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	187
MspCI	CTTAAG	1 cut(s)	152
MspI	CCGG	3 cut(s)	99, 132, 167
MspR9I	CCNGG	2 cut(s)	133, 167
MwoI	GCNNNNNNNGC	1 cut(s)	187
NciI	CCSGG	2 cut(s)	133, 167
NcoI	CCATGG	1 cut(s)	204
NheI	GCTAGC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	33, 44, 208
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PspPI	GGNCC	2 cut(s)	134, 169
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	5, 153
SatI	GCNGC	1 cut(s)	188
Sau96I	GGNCC	2 cut(s)	134, 169
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	133, 167
SetI	ASST	4 cut(s)	66, 78, 87, 147
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	20
SsiI	CCGC	2 cut(s)	149, 185
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	131, 165
StyI	CCWWGG	1 cut(s)	204
TasI	AATT	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	5, 153
Tru9I	TTAA	2 cut(s)	5, 153
TseI	GCWGC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	57
Vha464I	CTTAAG	1 cut(s)	152
XapI	RAATTY	1 cut(s)	20
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.