Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010804

Physical Location & Seq

Genomic Coordinates Reverse (-)

66414131 .. 66417115

Gene Structure 2985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG449800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAGTACTTGGAAAGGAGAGAATGTGAATATGATGCAAAGACTCTTGTGAACTTTTACAAGGAAGGGGACTTCTCTGATGAGCCTTCTTTGACAGGAGTCATTGTTTTCACATCTACTCCAGACAAAGAATCAAACAAATATTACCTGGGTCCTGCTCCATTGGAGGATATGGCAAGCCAAATTGCGACTGCTTCTGGGCCATGCGGGAACAACAGAGACTACTTGTTTTTGCTGGAAAAAGCTATGTTTGATATTGGCCATGAAGAAGACTATGTGATAGAGCTTGCAAATGAGGTGAGGAATGTACTTGGAATTGTTGGGAAAGGAATTCCAAGGGATAAGAAGTTGACAGGACCAACCCACATCCCGCTCAAGTCCCACATTCCAACCATTCAATTGCATCCCCTTCCGGAAGCCATTGCCATGGACTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003839 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010035 GO:0010038 GO:0010288 GO:0016829 GO:0016840 GO:0016842 GO:0034641 GO:0042219 GO:0042221 GO:0043171 GO:0043603 GO:0044237 GO:0044248 GO:0044273 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0051187 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ChaC

Protein Analysis

145

Amino Acids

16.2

Weight (kDa)

4.77

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ChaC	PF04752	2 - 102	5.9e-16	ChaC-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31290 AT5G26220 AT5G26220
fragaria_vesca	FvH4_2g36490 FvH4_3g36120
malus_domestica	MD08G1124700.v1.1 MD15G1104100.v1.1
prunus_persica	Prupe.1G456300_v2.0.a1
pyrus_communis	pycom08g10340 pycom15g09450 pycom15g09490
rosa_chinensis	RchiOBHm_Chr6g0305381
rosa_laevigata	RLG00000010895
rosa_multiflora	Rmu_co8139608.1_g000001 Rmu_sc0002782.1_g000008
rosa_roxburghii	Rroxscaffold_7G00162860
rosa_rugosa	Rorug06G0340000
rosa_samantha	Rh6BG449800 Rh6CG465800
rosa_wichuraiana	Rw6G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	373
AccIII	TCCGGA	1 cut(s)	412
AciI	CCGC	2 cut(s)	207, 371
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	330
AfaI	GTAC	2 cut(s)	8, 309
AgsI	TTSAA	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	2 cut(s)	245, 286
AluI	AGCT	2 cut(s)	245, 286
Alw26I	GTCTC	1 cut(s)	213
Aor13HI	TCCGGA	1 cut(s)	412
AoxI	GGCC	2 cut(s)	200, 259
ApoI	RAATTY	1 cut(s)	330
AspS9I	GGNCC	3 cut(s)	152, 200, 356
AsuHPI	GGTGA	1 cut(s)	310
AvaII	GGWCC	2 cut(s)	152, 356
BalI	TGGCCA	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	276
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	213
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	2 cut(s)	152, 356
BmgT120I	GGNCC	3 cut(s)	152, 200, 356
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	2 cut(s)	25, 412
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	359
BsaJI	CCNNGG	3 cut(s)	148, 335, 426
BsaWI	WCCGGW	1 cut(s)	412
BsaXI	ACNNNNNCTCC	6 cut(s)	10, 40, 90, 103, 120, 133
Bse3DI	GCAATG	1 cut(s)	420
BseAI	TCCGGA	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	148, 335, 426
BseGI	GGATG	2 cut(s)	366, 403
BseMI	GCAATG	1 cut(s)	420
BshFI	GGCC	2 cut(s)	202, 261
BsiSI	CCGG	1 cut(s)	413
BslFI	GGGAC	2 cut(s)	83, 364
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	2 cut(s)	83, 364
BsnI	GGCC	2 cut(s)	202, 261
Bsp13I	TCCGGA	1 cut(s)	412
Bsp19I	CCATGG	1 cut(s)	426
BspACI	CCGC	2 cut(s)	207, 371
BspANI	GGCC	2 cut(s)	202, 261
BspEI	TCCGGA	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	153
BsrBI	CCGCTC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	420
BssECI	CCNNGG	3 cut(s)	148, 335, 426
BssT1I	CCWWGG	2 cut(s)	335, 426
Bst2UI	CCWGG	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	178, 288
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	366, 403
BstMAI	GTCTC	1 cut(s)	213
BstNI	CCWGG	1 cut(s)	149
BstPAI	GACNNNNGTC	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	147
BstV2I	GAAGAC	1 cut(s)	276
BstXI	CCANNNNNNTGG	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	202, 261
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	2 cut(s)	366, 403
Cac8I	GCNNGC	2 cut(s)	178, 288
Cfr13I	GGNCC	3 cut(s)	152, 200, 356
Csp6I	GTAC	2 cut(s)	7, 308
CviAII	CATG	3 cut(s)	204, 263, 427
CviJI	RGCY	7 cut(s)	85, 180, 202, 245, 261, 286, 419
CviKI_1	RGCY	7 cut(s)	85, 180, 202, 245, 261, 286, 419
CviQI	GTAC	2 cut(s)	7, 308
EaeI	YGGCCR	1 cut(s)	259
Eco130I	CCWWGG	2 cut(s)	335, 426
Eco47I	GGWCC	2 cut(s)	152, 356
EcoO109I	RGGNCCY	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	335, 426
ErhI	CCWWGG	2 cut(s)	335, 426
FaeI	CATG	3 cut(s)	207, 266, 430
FaiI	YATR	7 cut(s)	33, 173, 205, 248, 264, 276, 428
FaqI	GGGAC	2 cut(s)	83, 364
FatI	CATG	3 cut(s)	203, 262, 426
FauI	CCCGC	2 cut(s)	200, 378
FokI	GGATG	2 cut(s)	353, 390
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	202, 261
HapII	CCGG	1 cut(s)	413
Hin1II	CATG	3 cut(s)	207, 266, 430
HincII	GTYRAC	1 cut(s)	351
HindII	GTYRAC	1 cut(s)	351
HinfI	GANTC	4 cut(s)	43, 99, 131, 431
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	52, 351
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	2 cut(s)	122, 413
Hpy8I	GTNNAC	2 cut(s)	52, 351
HpyAV	CCTTC	3 cut(s)	59, 96, 419
HpyCH4V	TGCA	3 cut(s)	38, 290, 403
Hsp92II	CATG	3 cut(s)	207, 266, 430
Kpn2I	TCCGGA	1 cut(s)	412
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	9 cut(s)	81, 134, 135, 161, 168, 183, 221, 339, 426
LweI	GCATC	2 cut(s)	25, 412
MbiI	CCGCTC	1 cut(s)	373
MboII	GAAGA	2 cut(s)	278, 281
MfeI	CAATTG	1 cut(s)	398
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	4 cut(s)	183, 315, 330, 398
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	3 cut(s)	37, 108, 425
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	3 cut(s)	160, 289, 294
Mox20I	TGGCCA	1 cut(s)	261
MroI	TCCGGA	1 cut(s)	412
MscI	TGGCCA	1 cut(s)	261
MslI	CAYNNNNRTG	1 cut(s)	425
Msp20I	TGGCCA	1 cut(s)	261
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	149
MunI	CAATTG	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	426
NlaIII	CATG	3 cut(s)	207, 266, 430
NlaIV	GGNNCC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	131
PleI	GAGTC	3 cut(s)	37, 107, 425
PpsI	GAGTC	3 cut(s)	37, 107, 425
PpuMI	RGGWCCY	1 cut(s)	152
PshAI	GACNNNNGTC	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	3 cut(s)	152, 200, 356
PspPPI	RGGWCCY	1 cut(s)	152
RsaI	GTAC	2 cut(s)	8, 309
RsaNI	GTAC	2 cut(s)	7, 308
RseI	CAYNNNNRTG	1 cut(s)	425
Sau96I	GGNCC	3 cut(s)	152, 200, 356
ScaI	AGTACT	1 cut(s)	8
SchI	GAGTC	3 cut(s)	37, 108, 425
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	4 cut(s)	150, 247, 288, 300
SfaNI	GCATC	2 cut(s)	25, 412
SinI	GGWCC	2 cut(s)	152, 356
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	4 cut(s)	183, 315, 330, 398
SsiI	CCGC	2 cut(s)	207, 371
SspI	AATATT	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	2 cut(s)	335, 426
TasI	AATT	4 cut(s)	183, 315, 330, 398
TatI	WGTACW	2 cut(s)	6, 307
TfiI	GAWTC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	279
VpaK11BI	GGWCC	2 cut(s)	152, 356
XapI	RAATTY	1 cut(s)	330
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.