Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002782.1

Orthogroup ID

OG0010804

Physical Location & Seq

Genomic Coordinates Forward (+)

11367 .. 17029

Gene Structure 5663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002782.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

atgatagagaacgagtttgagtggaatgtcccacttctggaggttctatttacacctatggaggttggaatgactgcttgtattcctctaagccttagaggggcagacgatggtttaatttggcactatgacaagagaggatgttatggagtgagaagtggctaccatgtggctcggctccaagaaggtagaacggaccgggcttctagctcgagtggctcttatggaattcaagatggattgcatctattcagagactgtgatgtcacatcatgcttttgggtgtttactacattgggtctattggctaagaatgtggctggctcatgtgtggtggattgggtcctcaacgtcgttgacaagctggatggtaaccaaagatgtgcttttttcatggcactttgggttatttgtgccaaatggaattcctccaaggaagtaactaacaagttggaatatttgaccacccaactaggaccaagcaagttcccagttggaatatttggccacccaactaggaccaagttcccagttgaatcttggttcattggactggaattggttatttggcttgatgacttcaatgacctgattttgtgccttctcggtcggatcacaccacacgctttcctcgcatttcctaatcgagttataaaaccaaccatggtattctgggtgtttggatatggttcacttgtgtggaaccctggttttgaatacgacgagaaagtgataggtttcatcaaggactacaggcgtgtattcgatcttgcttgcattgatcatcgaggtacgcctgagcaccctgcaagaacttgcacattggaacaccaagaaggggctatttgctggggtgctgcttattctgtgtgtggcggccctgaaagggaaagactggctatggagtacttggaaaggagagaatgtgaatatgatgcaaagactcttgtgaacttttacaaggaaggggacttctctgatgaaccttctttgacaggagtcattgttttcacatctactccagacaaagaatcaaacaaatattacctgggtcctgctccattggaggatatggcaagccaaattgcgactgcttttgggccatgcgggaacaacagagattacttatttttgctggaaaaagctatgtttgatattggccatgaagatgactatgtgatagagcttgcaaatgaggtgaggaatgtacttggaattgttgggaaaggaattccaagggataagaagttgacaggaccaacccacattccaaccattcaattgcatccccttccagaagccatcgccatggactcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003839 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010035 GO:0010038 GO:0010288 GO:0016829 GO:0016840 GO:0016842 GO:0034641 GO:0042219 GO:0042221 GO:0043171 GO:0043603 GO:0044237 GO:0044248 GO:0044273 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0051187 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ChaC

Protein Analysis

439

Amino Acids

49.48

Weight (kDa)

5.13

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31290 AT5G26220 AT5G26220
fragaria_vesca	FvH4_2g36490 FvH4_3g36120
malus_domestica	MD08G1124700.v1.1 MD15G1104100.v1.1
prunus_persica	Prupe.1G456300_v2.0.a1
pyrus_communis	pycom08g10340 pycom15g09450 pycom15g09490
rosa_chinensis	RchiOBHm_Chr6g0305381
rosa_laevigata	RLG00000010895
rosa_multiflora	Rmu_co8139608.1_g000001 Rmu_sc0002782.1_g000008
rosa_roxburghii	Rroxscaffold_7G00162860
rosa_rugosa	Rorug06G0340000
rosa_samantha	Rh6BG449800 Rh6CG465800
rosa_wichuraiana	Rw6G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	653
AasI	GACNNNNNNGTC	1 cut(s)	263
AciI	CCGC	2 cut(s)	876, 1107
AclWI	GGATC	1 cut(s)	620
AcoI	YGGCCR	2 cut(s)	505, 1159
AcsI	RAATTY	3 cut(s)	228, 424, 1230
AfaI	GTAC	3 cut(s)	793, 908, 1209
AfiI	CCNNNNNNNGG	4 cut(s)	37, 100, 838, 886
AgsI	TTSAA	5 cut(s)	233, 536, 583, 716, 1280
AjnI	CCWGG	2 cut(s)	706, 1047
AleI	CACNNNNGTG	1 cut(s)	697
AluBI	AGCT	4 cut(s)	210, 364, 1145, 1186
AluI	AGCT	4 cut(s)	210, 364, 1145, 1186
Alw21I	GWGCWC	1 cut(s)	804
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	620
AlwNI	CAGNNNCTG	1 cut(s)	258
Ama87I	CYCGRG	1 cut(s)	211
AoxI	GGCC	4 cut(s)	505, 877, 1100, 1159
ApeKI	GCWGC	1 cut(s)	857
ApoI	RAATTY	3 cut(s)	228, 424, 1230
AspS9I	GGNCC	8 cut(s)	196, 343, 476, 519, 878, 1052, 1100, 1256
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	1210
AvaI	CYCGRG	1 cut(s)	211
AvaII	GGWCC	6 cut(s)	196, 343, 476, 519, 1052, 1256
BalI	TGGCCA	2 cut(s)	507, 1161
Bbv12I	GWGCWC	1 cut(s)	804
BbvI	GCAGC	1 cut(s)	844
BccI	CCATC	4 cut(s)	104, 230, 362, 1310
BciT130I	CCWGG	2 cut(s)	708, 1049
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	3 cut(s)	207, 473, 516
BfmI	CTRYAG	1 cut(s)	751
BisI	GCNGC	2 cut(s)	858, 877
BlsI	GCNGC	2 cut(s)	859, 878
BmcAI	AGTACT	1 cut(s)	908
Bme1390I	CCNGG	3 cut(s)	200, 708, 1049
Bme18I	GGWCC	6 cut(s)	196, 343, 476, 519, 1052, 1256
BmeT110I	CYCGRG	1 cut(s)	211
BmgT120I	GGNCC	8 cut(s)	196, 343, 476, 519, 878, 1052, 1100, 1256
BmiI	GGNNCC	4 cut(s)	179, 344, 704, 1053
BmrFI	CCNGG	3 cut(s)	200, 708, 1049
BmrI	ACTGGG	2 cut(s)	485, 524
BmsI	GCATC	3 cut(s)	253, 925, 1294
BmuI	ACTGGG	2 cut(s)	485, 524
BoxI	GACNNNNGTC	1 cut(s)	998
BpmI	CTGGAG	2 cut(s)	59, 1005
Bpu10I	CCTNAGC	1 cut(s)	798
BpuMI	CCSGG	1 cut(s)	200
BsaJI	CCNNGG	6 cut(s)	432, 663, 706, 1048, 1235, 1308
BsaXI	ACNNNNNCTCC	6 cut(s)	910, 940, 990, 1003, 1020, 1033
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 100, 838, 886
Bse1I	ACTGG	4 cut(s)	491, 530, 558, 900
BseBI	CCWGG	2 cut(s)	708, 1049
BseDI	CCNNGG	6 cut(s)	432, 663, 706, 1048, 1235, 1308
BseGI	GGATG	3 cut(s)	146, 373, 1285
BseLI	CCNNNNNNNGG	4 cut(s)	37, 100, 838, 886
BseMII	CTCAG	1 cut(s)	789
BseNI	ACTGG	4 cut(s)	491, 530, 558, 900
BseXI	GCAGC	1 cut(s)	844
BseYI	CCCAGC	1 cut(s)	849
Bsh1285I	CGRYCG	1 cut(s)	610
BshFI	GGCC	4 cut(s)	507, 879, 1102, 1161
BsiEI	CGRYCG	1 cut(s)	610
BsiHKAI	GWGCWC	1 cut(s)	804
BsiHKCI	CYCGRG	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	199
BslFI	GGGAC	2 cut(s)	14, 983
BslI	CCNNNNNNNGG	4 cut(s)	37, 100, 838, 886
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	2 cut(s)	14, 983
BsnI	GGCC	4 cut(s)	507, 879, 1102, 1161
BsoBI	CYCGRG	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	804
Bsp143I	GATC	3 cut(s)	612, 766, 781
Bsp19I	CCATGG	2 cut(s)	663, 1308
BspACI	CCGC	2 cut(s)	876, 1107
BspANI	GGCC	4 cut(s)	507, 879, 1102, 1161
BspCNI	CTCAG	1 cut(s)	790
BspLI	GGNNCC	4 cut(s)	179, 344, 704, 1053
BspPI	GGATC	1 cut(s)	620
BsrI	ACTGG	4 cut(s)	491, 530, 558, 900
BssECI	CCNNGG	6 cut(s)	432, 663, 706, 1048, 1235, 1308
BssMI	GATC	3 cut(s)	612, 766, 781
BssT1I	CCWWGG	4 cut(s)	432, 663, 1235, 1308
Bst2UI	CCWGG	2 cut(s)	708, 1049
Bst4CI	ACNGT	1 cut(s)	260
BstC8I	GCNNGC	4 cut(s)	322, 775, 1078, 1188
BstDEI	CTNAG	4 cut(s)	89, 95, 309, 798
BstDSI	CCRYGG	2 cut(s)	663, 1308
BstEII	GGTNACC	1 cut(s)	371
BstF5I	GGATG	3 cut(s)	146, 373, 1285
BstKTI	GATC	3 cut(s)	615, 769, 784
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	3 cut(s)	612, 766, 781
BstMCI	CGRYCG	1 cut(s)	610
BstMWI	GCNNNNNNNGC	2 cut(s)	216, 632
BstNI	CCWGG	2 cut(s)	708, 1049
BstPAI	GACNNNNGTC	1 cut(s)	998
BstPI	GGTNACC	1 cut(s)	371
BstSCI	CCNGG	3 cut(s)	198, 706, 1047
BstSFI	CTRYAG	1 cut(s)	751
BstV1I	GCAGC	1 cut(s)	844
BstXI	CCANNNNNNTGG	1 cut(s)	1309
BsuRI	GGCC	4 cut(s)	507, 879, 1102, 1161
BtgI	CCRYGG	2 cut(s)	663, 1308
BtgZI	GCGATG	1 cut(s)	1288
BtsCI	GGATG	3 cut(s)	146, 373, 1285
Cac8I	GCNNGC	4 cut(s)	322, 775, 1078, 1188
CaiI	CAGNNNCTG	1 cut(s)	258
Cfr13I	GGNCC	8 cut(s)	196, 343, 476, 519, 878, 1052, 1100, 1256
CpoI	CGGWCCG	1 cut(s)	196
Csp6I	GTAC	3 cut(s)	792, 907, 1208
CspI	CGGWCCG	1 cut(s)	196
CviAII	CATG	8 cut(s)	167, 273, 327, 394, 664, 1104, 1163, 1309
CviQI	GTAC	3 cut(s)	792, 907, 1208
DdeI	CTNAG	4 cut(s)	89, 95, 309, 798
DpnI	GATC	3 cut(s)	614, 768, 783
DpnII	GATC	3 cut(s)	612, 766, 781
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	2 cut(s)	505, 1159
Eco130I	CCWWGG	4 cut(s)	432, 663, 1235, 1308
Eco47I	GGWCC	6 cut(s)	196, 343, 476, 519, 1052, 1256
Eco88I	CYCGRG	1 cut(s)	211
Eco91I	GGTNACC	1 cut(s)	371
EcoO109I	RGGNCCY	2 cut(s)	343, 1052
EcoO65I	GGTNACC	1 cut(s)	371
EcoRI	GAATTC	3 cut(s)	228, 424, 1230
EcoRII	CCWGG	2 cut(s)	706, 1047
EcoT14I	CCWWGG	4 cut(s)	432, 663, 1235, 1308
ErhI	CCWWGG	4 cut(s)	432, 663, 1235, 1308
FaeI	CATG	8 cut(s)	170, 276, 330, 397, 667, 1107, 1166, 1312
FalI	AAGNNNNNCTT	2 cut(s)	370, 402
FaqI	GGGAC	2 cut(s)	14, 983
FatI	CATG	8 cut(s)	166, 272, 326, 393, 663, 1103, 1162, 1308
FauI	CCCGC	1 cut(s)	1100
FbaI	TGATCA	1 cut(s)	781
Fnu4HI	GCNGC	2 cut(s)	858, 877
FokI	GGATG	3 cut(s)	153, 380, 1272
Fsp4HI	GCNGC	2 cut(s)	858, 877
FspBI	CTAG	3 cut(s)	207, 473, 516
GluI	GCNGC	2 cut(s)	858, 877
GsaI	CCCAGC	1 cut(s)	853
GsuI	CTGGAG	2 cut(s)	59, 1005
HaeIII	GGCC	4 cut(s)	507, 879, 1102, 1161
HapII	CCGG	1 cut(s)	199
Hin1II	CATG	8 cut(s)	170, 276, 330, 397, 667, 1107, 1166, 1312
HincII	GTYRAC	2 cut(s)	358, 1251
HindII	GTYRAC	2 cut(s)	358, 1251
HinfI	GANTC	5 cut(s)	536, 943, 999, 1031, 1313
HpaII	CCGG	1 cut(s)	199
HphI	GGTGA	1 cut(s)	1210
Hpy166II	GTNNAC	5 cut(s)	288, 358, 692, 952, 1251
Hpy188I	TCNGA	3 cut(s)	254, 612, 979
Hpy188III	TCNNGA	4 cut(s)	38, 233, 1022, 1295
Hpy8I	GTNNAC	5 cut(s)	288, 358, 692, 952, 1251
Hpy99I	CGWCG	2 cut(s)	356, 725
HpyAV	CCTTC	6 cut(s)	179, 611, 830, 959, 996, 1301
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	7 cut(s)	244, 777, 809, 819, 938, 1190, 1285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	216, 632
HpyF3I	CTNAG	4 cut(s)	89, 95, 309, 798
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	8 cut(s)	170, 276, 330, 397, 667, 1107, 1166, 1312
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	3 cut(s)	612, 766, 781
LmnI	GCTCC	2 cut(s)	183, 1063
Lsp1109I	GCAGC	1 cut(s)	844
LweI	GCATC	3 cut(s)	253, 925, 1294
MaeI	CTAG	3 cut(s)	207, 473, 516
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	3 cut(s)	265, 371, 439
MalI	GATC	3 cut(s)	614, 768, 783
MboI	GATC	3 cut(s)	612, 766, 781
MboII	GAAGA	1 cut(s)	1178
MfeI	CAATTG	1 cut(s)	1280
MhlI	GDGCHC	1 cut(s)	804
MlsI	TGGCCA	2 cut(s)	507, 1161
MluCI	AATT	8 cut(s)	117, 228, 424, 557, 1083, 1215, 1230, 1280
MluNI	TGGCCA	2 cut(s)	507, 1161
MlyI	GAGTC	3 cut(s)	937, 1008, 1307
MmeI	TCCRAC	5 cut(s)	46, 432, 475, 590, 1295
Mox20I	TGGCCA	2 cut(s)	507, 1161
MscI	TGGCCA	2 cut(s)	507, 1161
MseI	TTAA	1 cut(s)	116
MslI	CAYNNNNRTG	3 cut(s)	697, 1167, 1307
Msp20I	TGGCCA	2 cut(s)	507, 1161
MspI	CCGG	1 cut(s)	199
MspR9I	CCNGG	3 cut(s)	200, 708, 1049
MunI	CAATTG	1 cut(s)	1280
MvaI	CCWGG	2 cut(s)	708, 1049
MwoI	GCNNNNNNNGC	2 cut(s)	216, 632
NciI	CCSGG	1 cut(s)	200
NcoI	CCATGG	2 cut(s)	663, 1308
NdeII	GATC	3 cut(s)	612, 766, 781
NlaIII	CATG	8 cut(s)	170, 276, 330, 397, 667, 1107, 1166, 1312
NlaIV	GGNNCC	4 cut(s)	179, 344, 704, 1053
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	265
OliI	CACNNNNGTG	1 cut(s)	697
PaeR7I	CTCGAG	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	536, 1031
PkrI	GCNGC	2 cut(s)	859, 878
PleI	GAGTC	3 cut(s)	937, 1007, 1307
PpsI	GAGTC	3 cut(s)	937, 1007, 1307
PpuMI	RGGWCCY	2 cut(s)	343, 1052
PshAI	GACNNNNGTC	1 cut(s)	998
PsiI	TTATAA	1 cut(s)	653
Psp5II	RGGWCCY	2 cut(s)	343, 1052
Psp6I	CCWGG	2 cut(s)	706, 1047
PspEI	GGTNACC	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	849
PspGI	CCWGG	2 cut(s)	706, 1047
PspN4I	GGNNCC	4 cut(s)	179, 344, 704, 1053
PspPI	GGNCC	8 cut(s)	196, 343, 476, 519, 878, 1052, 1100, 1256
PspPPI	RGGWCCY	2 cut(s)	343, 1052
PspXI	VCTCGAGB	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	258
RsaI	GTAC	3 cut(s)	793, 908, 1209
RsaNI	GTAC	3 cut(s)	792, 907, 1208
RseI	CAYNNNNRTG	3 cut(s)	697, 1167, 1307
Rsr2I	CGGWCCG	1 cut(s)	196
RsrII	CGGWCCG	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	2 cut(s)	858, 877
Sau3AI	GATC	3 cut(s)	612, 766, 781
Sau96I	GGNCC	8 cut(s)	196, 343, 476, 519, 878, 1052, 1100, 1256
ScaI	AGTACT	1 cut(s)	908
SchI	GAGTC	3 cut(s)	937, 1008, 1307
ScrFI	CCNGG	3 cut(s)	200, 708, 1049
SduI	GDGCHC	1 cut(s)	804
SfaNI	GCATC	3 cut(s)	253, 925, 1294
SfcI	CTRYAG	1 cut(s)	751
Sfr274I	CTCGAG	1 cut(s)	211
SinI	GGWCC	6 cut(s)	196, 343, 476, 519, 1052, 1256
SlaI	CTCGAG	1 cut(s)	211
SmiMI	CAYNNNNRTG	3 cut(s)	697, 1167, 1307
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	8 cut(s)	117, 228, 424, 557, 1083, 1215, 1230, 1280
SsiI	CCGC	2 cut(s)	876, 1107
SspI	AATATT	3 cut(s)	458, 501, 1043
SspMI	CTAG	3 cut(s)	207, 473, 516
StyD4I	CCNGG	3 cut(s)	198, 706, 1047
StyI	CCWWGG	4 cut(s)	432, 663, 1235, 1308
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	4 cut(s)	212, 646, 765, 787
TaqII	GACCGA	1 cut(s)	596
TasI	AATT	8 cut(s)	117, 228, 424, 557, 1083, 1215, 1230, 1280
TatI	WGTACW	2 cut(s)	906, 1207
TauI	GCSGC	1 cut(s)	879
TfiI	GAWTC	2 cut(s)	536, 1031
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	1 cut(s)	857
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	5 cut(s)	382, 535, 730, 996, 1179
TspGWI	ACGGA	1 cut(s)	209
VpaK11BI	GGWCC	6 cut(s)	196, 343, 476, 519, 1052, 1256
XapI	RAATTY	3 cut(s)	228, 424, 1230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	537
XhoI	CTCGAG	1 cut(s)	211
XspI	CTAG	3 cut(s)	207, 473, 516
ZrmI	AGTACT	1 cut(s)	908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.