Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8139608.1

Orthogroup ID

OG0010804

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 576

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8139608.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

atggtattctgggtgtttggatatggttcacttgtgtggaaccctggttttgaatacgacgagaaagtgataggtttcatcaaggactacaggcgtgtattcgatcttgcttgcattgatcatcgaggtacgcctgagcaccctgcaagaacttgcacattggaacaccaagaaggggctatttgctggggtgctgcttattctgtgtgtggcggccctgaaagggaaagactggctatggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003839 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010035 GO:0010038 GO:0010288 GO:0016829 GO:0016840 GO:0016842 GO:0034641 GO:0042219 GO:0042221 GO:0043171 GO:0043603 GO:0044237 GO:0044248 GO:0044273 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0051187 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ChaC

Protein Analysis

81

Amino Acids

9.29

Weight (kDa)

5.27

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31290 AT5G26220 AT5G26220
fragaria_vesca	FvH4_2g36490 FvH4_3g36120
malus_domestica	MD08G1124700.v1.1 MD15G1104100.v1.1
prunus_persica	Prupe.1G456300_v2.0.a1
pyrus_communis	pycom08g10340 pycom15g09450 pycom15g09490
rosa_chinensis	RchiOBHm_Chr6g0305381
rosa_laevigata	RLG00000010895
rosa_multiflora	Rmu_co8139608.1_g000001 Rmu_sc0002782.1_g000008
rosa_roxburghii	Rroxscaffold_7G00162860
rosa_rugosa	Rorug06G0340000
rosa_samantha	Rh6BG449800 Rh6CG465800
rosa_wichuraiana	Rw6G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	2 cut(s)	175, 223
AgsI	TTSAA	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	43
AleI	CACNNNNGTG	1 cut(s)	34
Alw21I	GWGCWC	1 cut(s)	141
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	45
BclI	TGATCA	1 cut(s)	118
BfmI	CTRYAG	1 cut(s)	88
BisI	GCNGC	2 cut(s)	195, 214
BlsI	GCNGC	2 cut(s)	196, 215
Bme1390I	CCNGG	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	45
Bpu10I	CCTNAGC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 223
Bse1I	ACTGG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	175, 223
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	186
BshFI	GGCC	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	175, 223
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	103, 118
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	2 cut(s)	103, 118
Bst2UI	CCWGG	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	135
BstKTI	GATC	2 cut(s)	106, 121
BstMBI	GATC	2 cut(s)	103, 118
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	129
CviJI	RGCY	3 cut(s)	179, 216, 236
CviKI_1	RGCY	3 cut(s)	179, 216, 236
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	2 cut(s)	105, 120
DpnII	GATC	2 cut(s)	103, 118
EcoRII	CCWGG	1 cut(s)	43
FaiI	YATR	2 cut(s)	24, 239
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	195, 214
Fsp4HI	GCNGC	2 cut(s)	195, 214
GluI	GCNGC	2 cut(s)	195, 214
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	29
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	167
HpyCH4V	TGCA	3 cut(s)	114, 146, 156
HpyF3I	CTNAG	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	103, 118
LpnPI	CCDG	8 cut(s)	30, 57, 76, 147, 156, 172, 218, 231
Lsp1109I	GCAGC	1 cut(s)	181
MalI	GATC	2 cut(s)	105, 120
MboI	GATC	2 cut(s)	103, 118
MhlI	GDGCHC	1 cut(s)	141
MnlI	CCTC	1 cut(s)	119
MslI	CAYNNNNRTG	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	103, 118
NlaIV	GGNNCC	1 cut(s)	41
OliI	CACNNNNGTG	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	196, 215
Psp6I	CCWGG	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	215
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	34
SatI	GCNGC	2 cut(s)	195, 214
Sau3AI	GATC	2 cut(s)	103, 118
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	2 cut(s)	76, 130
SfcI	CTRYAG	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	34
SsiI	CCGC	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	43
TaqI	TCGA	2 cut(s)	102, 124
TauI	GCSGC	1 cut(s)	216
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.