Rorug06G0340000

Catalyzes the formation of 5-oxoproline from gamma- glutamyl dipeptides and plays a significant role in glutathione (GSH) homeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010804
Physical Location & Seq
Forward (+)
49113768 .. 49114684
917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0340000.1

Sequence Viewer

Length: 837 bp
ATGACCGACCGGAGAAAAAAGTGTATGTCACAATGGTCTGATCTTCCTCCTGAACTTCTATCTCCAATTGCAGAGTCCGTAGACCTAATCGATCTTCTGGGTTTTCGTGGCGTGTCAGCGTGTGCAAATCTTGGAAGTCTGCTTCATCCACAGCTTCAGCTCAATCTTCAACTAAACCCTGAACTGGATGGAGCAACTTGTCTTGCTTCATCCCAAGGATGGTTGCTTGTATTCCAAGAAAGCTCGGGCTCATTGTTTTTGTTTTGCCCCTTCTCCCGTGCGAAAATAGACCTTCCCAACTTCCCAGCCTCACAACTCTCCGACCATATTGCAGCATTTTCATCTCCTCCGAATTCCCAAGATTGCATCCTTTGTGTCATTAGCCGTACCAATAATGATGAATGGGAGCTGAATTTACTTCGTCGGGGAGCCAATGAATGGACCAAACATAATTATTCTGGTTACTCAAAACTGAAGACAATCAAAGGTGCTGCTTATCACAAAGAGGACGGAGAGTTCAACTTTTTCGATCCAGATGACAAGTCACTCACATTTTCTACTAAGAACCTACGCTGGCGCTATTTTAACATAATCTCTCCCGGAACAGCAGATATAGAAGAAGTACCATTTAAATATTTCATACATTATTCTCAGAGAGAGAACTTGAAGAATAAGCTCGAGTTGGCAGAGAATGTTTCACTTTCTACTTGTGGGACACAGATGACTGATGGCACACTTGTTTTCAGTGAGAGCGTTACTGCTGATGCTGCTGACAACCAATCCAAGAGACGTCAACTTAAAGGGGTTTGGATCCACCCCAGGTTCTACCAAGTCTGA

Protein Analysis

278

Amino Acids

31.43

Weight (kDa)

5.89

Isoelectric Point (pI)

56.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 60 - 182 4.2e-17 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010804)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31290 AT5G26220 AT5G26220
fragaria_vesca FvH4_2g36490 FvH4_3g36120
malus_domestica MD08G1124700.v1.1 MD15G1104100.v1.1
prunus_persica Prupe.1G456300_v2.0.a1
pyrus_communis pycom08g10340 pycom15g09450 pycom15g09490
rosa_chinensis RchiOBHm_Chr6g0305381
rosa_laevigata RLG00000010895
rosa_multiflora Rmu_co8139608.1_g000001 Rmu_sc0002782.1_g000008
rosa_roxburghii Rroxscaffold_7G00162860
rosa_rugosa Rorug06G0340000
rosa_samantha Rh6BG449800 Rh6CG465800
rosa_wichuraiana Rw6G039360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 793
AccB7I CCANNNNNTGG 1 cut(s) 438
AccI GTMKAC 1 cut(s) 81
AclWI GGATC 3 cut(s) 524, 805, 818
AcsI RAATTY 2 cut(s) 352, 412
AcuI CTGAAG 2 cut(s) 140, 494
AcyI GRCGYC 1 cut(s) 790
AfaI GTAC 2 cut(s) 388, 624
AfiI CCNNNNNNNGG 3 cut(s) 184, 219, 438
AgsI TTSAA 3 cut(s) 170, 520, 667
AjnI CCWGG 1 cut(s) 818
AloI GAACNNNNNNTCC 2 cut(s) 500, 532
AluBI AGCT 5 cut(s) 154, 160, 243, 409, 676
AluI AGCT 5 cut(s) 154, 160, 243, 409, 676
Alw26I GTCTC 1 cut(s) 781
AlwI GGATC 3 cut(s) 524, 805, 818
Ama87I CYCGRG 2 cut(s) 244, 677
ApeKI GCWGC 3 cut(s) 332, 491, 767
ApoI RAATTY 2 cut(s) 352, 412
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 1 cut(s) 441
AsuC2I CCSGG 1 cut(s) 600
AvaI CYCGRG 2 cut(s) 244, 677
AvaII GGWCC 1 cut(s) 441
BamHI GGATCC 1 cut(s) 810
BanII GRGCYC 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 482
BbvI GCAGC 3 cut(s) 344, 478, 754
BccI CCATC 3 cut(s) 182, 213, 722
BceAI ACGGC 1 cut(s) 369
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciT130I CCWGG 1 cut(s) 820
BcnI CCSGG 1 cut(s) 600
BcoDI GTCTC 1 cut(s) 781
BfoI RGCGCY 1 cut(s) 580
BisI GCNGC 3 cut(s) 333, 492, 768
BlsI GCNGC 3 cut(s) 334, 493, 769
Bme1390I CCNGG 2 cut(s) 600, 820
Bme18I GGWCC 1 cut(s) 441
BmeT110I CYCGRG 2 cut(s) 244, 677
BmgT120I GGNCC 1 cut(s) 441
BmiI GGNNCC 2 cut(s) 430, 812
BmrFI CCNGG 2 cut(s) 600, 820
BmsI GCATC 2 cut(s) 375, 754
BpiI GAAGAC 1 cut(s) 482
BpuMI CCSGG 1 cut(s) 600
Bsa29I ATCGAT 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 790
BsaJI CCNNGG 2 cut(s) 214, 818
BsaWI WCCGGW 1 cut(s) 9
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 219, 438
Bse1I ACTGG 1 cut(s) 189
BseBI CCWGG 1 cut(s) 820
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 214, 818
BseGI GGATG 5 cut(s) 145, 193, 209, 224, 366
BseLI CCNNNNNNNGG 3 cut(s) 184, 219, 438
BseMII CTCAG 1 cut(s) 665
BseNI ACTGG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 336
BseXI GCAGC 3 cut(s) 344, 478, 754
BseYI CCCAGC 1 cut(s) 304
Bsh1285I CGRYCG 1 cut(s) 10
BshVI ATCGAT 1 cut(s) 90
BsiEI CGRYCG 1 cut(s) 10
BsiHKCI CYCGRG 2 cut(s) 244, 677
BsiSI CCGG 2 cut(s) 10, 600
BslFI GGGAC 1 cut(s) 727
BslI CCNNNNNNNGG 3 cut(s) 184, 219, 438
BsmAI GTCTC 1 cut(s) 781
BsmBI CGTCTC 1 cut(s) 781
BsmFI GGGAC 1 cut(s) 727
BsoBI CYCGRG 2 cut(s) 244, 677
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 4 cut(s) 40, 91, 529, 810
BspCNI CTCAG 1 cut(s) 664
BspDI ATCGAT 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 430, 812
BspPI GGATC 3 cut(s) 524, 805, 818
BsrI ACTGG 1 cut(s) 189
BssECI CCNNGG 2 cut(s) 214, 818
BssMI GATC 4 cut(s) 40, 91, 529, 810
BssNI GRCGYC 1 cut(s) 790
BssT1I CCWWGG 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 820
BstACI GRCGYC 1 cut(s) 790
BstC8I GCNNGC 1 cut(s) 575
BstDEI CTNAG 2 cut(s) 561, 651
BstF5I GGATG 5 cut(s) 145, 193, 209, 224, 366
BstH2I RGCGCY 1 cut(s) 580
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 4 cut(s) 43, 94, 532, 813
BstMAI GTCTC 1 cut(s) 781
BstMBI GATC 4 cut(s) 40, 91, 529, 810
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 767
BstNI CCWGG 1 cut(s) 820
BstSCI CCNGG 2 cut(s) 598, 818
BstV1I GCAGC 3 cut(s) 344, 478, 754
BstV2I GAAGAC 1 cut(s) 482
BstX2I RGATCY 1 cut(s) 810
BstYI RGATCY 1 cut(s) 810
Bsu15I ATCGAT 1 cut(s) 90
BsuTUI ATCGAT 1 cut(s) 90
BtsCI GGATG 5 cut(s) 145, 193, 209, 224, 366
BtsIMutI CAGTG 1 cut(s) 751
Cac8I GCNNGC 1 cut(s) 575
CfoI GCGC 1 cut(s) 579
Cfr13I GGNCC 1 cut(s) 441
ClaI ATCGAT 1 cut(s) 90
Csp6I GTAC 2 cut(s) 387, 623
CviJI RGCY 9 cut(s) 154, 160, 243, 249, 308, 384, 409, 431, 676
CviKI_1 RGCY 9 cut(s) 154, 160, 243, 249, 308, 384, 409, 431, 676
CviQI GTAC 2 cut(s) 387, 623
DdeI CTNAG 2 cut(s) 561, 651
DpnI GATC 4 cut(s) 42, 93, 531, 812
DpnII GATC 4 cut(s) 40, 91, 529, 810
DraI TTTAAA 1 cut(s) 631
Eco130I CCWWGG 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 441
Eco57I CTGAAG 2 cut(s) 140, 494
Eco88I CYCGRG 2 cut(s) 244, 677
EcoRI GAATTC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 818
EcoT14I CCWWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 214
Esp3I CGTCTC 1 cut(s) 781
FaiI YATR 6 cut(s) 26, 327, 450, 590, 614, 641
FaqI GGGAC 1 cut(s) 727
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 333, 492, 768
FokI GGATG 5 cut(s) 132, 196, 200, 231, 353
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 3 cut(s) 333, 492, 768
GlaI GCGC 1 cut(s) 578
GluI GCNGC 3 cut(s) 333, 492, 768
GsaI CCCAGC 1 cut(s) 308
HaeII RGCGCY 1 cut(s) 580
HapII CCGG 2 cut(s) 10, 600
HhaI GCGC 1 cut(s) 579
Hin1I GRCGYC 1 cut(s) 790
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HincII GTYRAC 1 cut(s) 794
HindII GTYRAC 1 cut(s) 794
HinfI GANTC 1 cut(s) 74
HpaII CCGG 2 cut(s) 10, 600
Hpy166II GTNNAC 2 cut(s) 82, 794
Hpy188I TCNGA 5 cut(s) 40, 322, 351, 654, 836
Hpy188III TCNNGA 2 cut(s) 50, 533
Hpy8I GTNNAC 2 cut(s) 82, 794
Hpy99I CGWCG 1 cut(s) 426
HpyAV CCTTC 2 cut(s) 280, 302
HpyCH4IV ACGT 1 cut(s) 790
HpyCH4V TGCA 4 cut(s) 71, 125, 332, 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 767
HpyF3I CTNAG 2 cut(s) 561, 651
HpySE526I ACGT 1 cut(s) 790
Hsp92I GRCGYC 1 cut(s) 790
HspAI GCGC 1 cut(s) 577
Kzo9I GATC 4 cut(s) 40, 91, 529, 810
LmnI GCTCC 3 cut(s) 191, 406, 428
Lsp1109I GCAGC 3 cut(s) 344, 478, 754
LweI GCATC 2 cut(s) 375, 754
MaeII ACGT 1 cut(s) 790
MaeIII GTNAC 4 cut(s) 27, 461, 543, 754
MalI GATC 4 cut(s) 42, 93, 531, 812
MboI GATC 4 cut(s) 40, 91, 529, 810
MboII GAAGA 6 cut(s) 35, 86, 158, 487, 629, 679
MfeI CAATTG 1 cut(s) 66
MflI RGATCY 1 cut(s) 810
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 4 cut(s) 66, 352, 412, 451
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 4 cut(s) 57, 319, 357, 499
MseI TTAA 3 cut(s) 585, 630, 798
MspI CCGG 2 cut(s) 10, 600
MspR9I CCNGG 2 cut(s) 600, 820
MunI CAATTG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 820
MwoI GCNNNNNNNGC 1 cut(s) 767
NciI CCSGG 1 cut(s) 600
NdeII GATC 4 cut(s) 40, 91, 529, 810
NlaIV GGNNCC 2 cut(s) 430, 812
NmuCI GTSAC 2 cut(s) 27, 543
PaeR7I CTCGAG 1 cut(s) 677
PflMI CCANNNNNTGG 1 cut(s) 438
PfoI TCCNGGA 1 cut(s) 598
PkrI GCNGC 3 cut(s) 334, 493, 769
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 818
PspFI CCCAGC 1 cut(s) 304
PspGI CCWGG 1 cut(s) 818
PspN4I GGNNCC 2 cut(s) 430, 812
PspPI GGNCC 1 cut(s) 441
PspXI VCTCGAGB 1 cut(s) 677
PsuI RGATCY 1 cut(s) 810
RsaI GTAC 2 cut(s) 388, 624
RsaNI GTAC 2 cut(s) 387, 623
SaqAI TTAA 3 cut(s) 585, 630, 798
SatI GCNGC 3 cut(s) 333, 492, 768
Sau3AI GATC 4 cut(s) 40, 91, 529, 810
Sau96I GGNCC 1 cut(s) 441
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 600, 820
SduI GDGCHC 1 cut(s) 251
SfaNI GCATC 2 cut(s) 375, 754
Sfr274I CTCGAG 1 cut(s) 677
SinI GGWCC 1 cut(s) 441
SlaI CTCGAG 1 cut(s) 677
SmiI ATTTAAAT 1 cut(s) 631
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
Sse9I AATT 4 cut(s) 66, 352, 412, 451
SspI AATATT 1 cut(s) 635
StyD4I CCNGG 2 cut(s) 598, 818
StyI CCWWGG 1 cut(s) 214
SwaI ATTTAAAT 1 cut(s) 631
TaiI ACGT 1 cut(s) 793
TaqI TCGA 3 cut(s) 90, 528, 678
TaqII GACCGA 1 cut(s) 20
TasI AATT 4 cut(s) 66, 352, 412, 451
Tru1I TTAA 3 cut(s) 585, 630, 798
Tru9I TTAA 3 cut(s) 585, 630, 798
TscAI CASTG 1 cut(s) 751
TseFI GTSAC 2 cut(s) 27, 543
TseI GCWGC 3 cut(s) 332, 491, 767
Tsp45I GTSAC 2 cut(s) 27, 543
TspDTI ATGAA 6 cut(s) 134, 198, 330, 414, 450, 628
TspGWI ACGGA 2 cut(s) 67, 525
TspRI CASTG 1 cut(s) 751
Van91I CCANNNNNTGG 1 cut(s) 438
VpaK11BI GGWCC 1 cut(s) 441
XapI RAATTY 2 cut(s) 352, 412
XhoI CTCGAG 1 cut(s) 677
XmiI GTMKAC 1 cut(s) 81
ZraI GACGTC 1 cut(s) 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.