MD08G1236100.v1.1
TCP Family

T-complex protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0005785
Physical Location & Seq
Forward (+)
30399324 .. 30406150
6827 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1236100.v1.1.491

Sequence Viewer

Length: 3513 bp
ATGGTGGGGGGCGGCGGTATAGCCATGGATTTTCCGGCCGAAGAGACGGCGTCGTCCTTCTCTTCGCCTCCGAGACTTCCCACGAGGCTCAGACGGAGGCTCAGCCTTGTCGACTCAAACAAGACTCCAACCACCGCCGAACAAATTCAGACCAAGCTCAGACTCGCCGATCTTCGCCGTCAGGAACACTATGAAAAGTTGTCAAGCAAGGCACGAGCAAAGCCGAGGAATCCCTCACGATCTTCATCTGAAGGGGAAGACCTTGGCCAGCGCCTAGAAGCCAAGCTACAAGCTGCTGAGAAGAAAAGGTTGAGCATTCTCGAAAATGCTCAAATGCGCTTGGCTAAATTGGACGAATTGAGGCAAGCAGCTAAAAGTGGGGTAGAAATGCGTGTTGAAAAGGAACGTCAAAAGCTTGGCTCGAAAGTGGAATCACGTTTTCAGCAGGCAGAGGCAAATAGAATGCTCTTGCTCAAAGCTTATAGACAAAGAAGGGCTACTTTGAAGGAAAGAACATCTCAGTCATTATTGCGGAAGATGGCTTGGGAGAAGAAGTACAAGGAGCGTGTACGTGCTGCAATTAGCCAAAAACGTGCAGCTGCTGAAAAAAAGCGATTGGCGCTTTTGGAAGCAGAGAAGAATAGGGCATGTGCAAGGATGTTGCAAGTGCAAAGAGTGGCCAAGTCTGTCTCTCATCAACGTGAGATTGAAAGGAGGGCAAAAAGGGAGCAGTTAGAAGACCGGTTGCAAAGGGCAAAGAGGCAAAGAGCAGAGTATCTAAGGCAAAGAGGAAAGCTACAGATATCTTTTCAAGTGAGTTGGAATAGGATGCACGAGGAGGCTGATCTCCTTTCCAGAAAGTTAGCAAGGTGTTGGAGGCGTTTCCTCATGCTAAGGAGAACTACACTTGCTTTGGCAAAAGATTATGATGCCTTGAAAATTAATGAAAAGACTGTCAAGTCAATGCCGTTTGAGCAGCTCGCAATTTTGATTGAATCAACTAATACCCTTCAGACTTTGAAAGCTCTTCTTGACAGGCTTGAGATCCGGTTAAAAGTTTCCAGGACTGTTGCCTCAATAAATTATCCATCCAGCTTTGATAACATAGACCACCTTCTCAAACGAGTTGCTTCCCCAAGAAAGAGGACTACACCAAGGACATCTTTAAGGAGCAGAGATGCAAAGAAAGAATCTTCCATCAGGGACGCAGCTAGAAATTCTGTTAAATTATCAAGGTATCCGATGAGAGTGGTGCTTTGTGCTTACATGATTTTGGGTCATCCAGATGCGGTTTTCAGTGGTAGTGGAGAGCCTGAAATTTCTCTGGCCAAATCTGCAGAAGAGTTTGTTAGACAGTTTGAGTTACTACTAAAAGTTATATTGGACAGCCCTGTACAGAGTTCTGATGAAGAGTCTGATTCCGCATTGCCCAAACATTTGACCTTCAGATCTCAGCTTGGAGCCTTTGATAAAGCATGGTGTTCCTACTTGAATTGTTTTGTGGGTTGGAAGGTTAAGGATGCTCGGTTATTAGTGGAAGATTTAGTGAGAGCAGCGTGCCATTTAGAGCTCTCCATGATTCAAACTTGCAAGATGACTCCGCAAGGAGAGAGTGGTGATCTTACTCATGAAGTGAAGGCTATTCAGAAACAGGTTACTGAAGACCAAAAGTTACTGAGGGAAAAAGTGCAGCACCTAGGTGGAGATGCTGGGATTGAGCGTATGAAATCTGCTATATCTGAAACACGGTTAAAATACTTTCAAGCAAAGGAAAATGGAAGCCCGTCGGGGTTGCAGCAGGTCACACACATTACTTCTCCAAGTCCCCCTAGTTCACCACTCAGTCCTTCTGCTAGTGCAGATAAGAGAAGTGATTCAGGTCGTGTAGTCCGATCCTTATTTAGGGAAGATGATACTGCCCATCATGGAGTTGTGTCCTCTGCTCCAAAAACCAGTTTGGATCAGCAGCTTGGATCTTCTTCACAAAAGTTGGTCACAGAGAATGAATTGATTGTGAATGAGTTTCTCCATGAGCAAAAGCAGGCTTTTGCCGATATTTTTAATGTTAATGACGAAGATCCAAACAATGTCCAGTCAAAGATTAGACAGACAATGGAGAAGGCTTTCTGGGATGGCATAATTGAATCTGTAAAACAGGACGAGCCCAACTATGACAGAATAATTCAACTCATGATGGAGGTGAGGGATGAAATCTGCGAGATGGCTCCACAGAGCTGGAAGCAAGAGATTTTTGAAGCTATTGATGTGGATATTCTCTCTCAGGTTTTAAAGTCTGGTAACCTGGACATTGATTACCTGGGAAAGATCCTAGAGTTTTCATTGGTCACATTGCGAAGGCTCTCCTCTCCAGCGAATGATGATGAAATGATGGCCACATACCAGAGTTTAAGGAAAGAACTAAATGAGATATGTCAAACCAGGGACGATTCCAGCTGCTCAAGTGTCCTGGCAATGGTCAAGGGCCTGCGTTTTGTTCTAGAGCAGATTCAGGTGCTTAAACGAGAGATTAGCAAAGCACGTATAAGACTTATGGAACCTTTGTTAAAGGGGCCAACTGGTGTGCAGTACCTGAGAAAAGCTTTTGCCGATCGCCATGGATCTCCCTCTGATGCCAATACCTCTCTACCACTTACAGCACAGTGGCTTTCAACAGTGTGGGATTGCAAAGATCAGGAGTGGCAAGAACATACAATCTCTTGCTCAACACTGACAAGCGGCGATAATCCATCTCAGGGGTTTGTTCCTACCACCTCCCTTAGAAGTGGTGGAAGCTTTCTGGTGAAAGCAAATTCTCCTTCTACTTCTGCTGCTACTAATAGCACAGGTATTCAACAACCGGAATGTAAGGGAGAAACAGTTGATTTGTTGGTGAGGATTGGTTTGTTGAAGTCGGTAAGCGGAGTGTCTGGTCTGACTGAAGAAGCTCTGCCTGAGACTCTCAAGCTTAACTGTTCTCGGCTGAGGGCTGTTCAGGCCCAAATTCAGAAAATTATTGTTACTTCCGTAAGCGTTCTTATTTGCCGGCAAACCCTTCTAAGTGAGAGGATAGTAACCAGCCCCACAGACATGGAACGCGTATTATCAAAATGCACCGAGCGACTTTTGGGGACCCTGGGCAGTGCCGAAGATGCAGGCATGGAGGAAATTGTTGAATCAATTAGTGACTTCTCGATCGACGGCAATGAAGTTGCAGACTGCGAGAAGCTTCGATCGAGGAAGGCGGTTATCACGAGCATGTTGGGAAAGAGCTTGCAAGCTGAGGATCCCGTGTTTAAAAGGGTTTCTTCTGCTGTTTATACGGCTGCAAGGGGAGTGGTTCTTGGCGGGAGCGGACCCCTAGGAAGAAAGTTAGCAGAAACAGCGCTCCGGCAAGTTGGAGCTGTGGCGCTGACAGAAAGCGTGGTGGAAGCTGCGGAGGTTTTAGTGGTGGCAGCCACCGTATCAGTTAGTGTTCATGGACCTTGGTATGTACATTTGACTGAGAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tcp11

Protein Analysis

1171

Amino Acids

131.08

Weight (kDa)

9.36

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tcp11 PF05794 688 - 1166 8e-78 T-complex protein 11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 52, 958
Acc36I ACCTGC 1 cut(s) 1789
AccBSI CCGCTC 1 cut(s) 3351
AccI GTMKAC 1 cut(s) 111
AccII CGCG 1 cut(s) 3096
AclWI GGATC 9 cut(s) 1039, 1887, 1968, 1981, 2072, 2320, 2626, 3278, 3291
AcoI YGGCCR 5 cut(s) 36, 265, 678, 1326, 2391
AcsI RAATTY 5 cut(s) 144, 1216, 1317, 2809, 3000
AcuI CTGAAG 5 cut(s) 270, 995, 1429, 1680, 2958
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 5 cut(s) 557, 570, 1395, 2588, 3492
AfeI AGCGCT 1 cut(s) 3384
AfiI CCNNNNNNNGG 3 cut(s) 1902, 2473, 2753
AflIII ACRYGT 2 cut(s) 3094, 3507
AgeI ACCGGT 1 cut(s) 741
AjnI CCWGG 6 cut(s) 1061, 2301, 2316, 2438, 2466, 3132
AleI CACNNNNGTG 1 cut(s) 1698
Alw21I GWGCWC 1 cut(s) 1572
Alw26I GTCTC 4 cut(s) 38, 67, 694, 2948
AlwI GGATC 9 cut(s) 1039, 1887, 1968, 1981, 2072, 2320, 2626, 3278, 3291
AlwNI CAGNNNCTG 2 cut(s) 602, 2590
Aor51HI AGCGCT 1 cut(s) 3384
AoxI GGCC 8 cut(s) 36, 265, 678, 1326, 2391, 2482, 2570, 2994
ApoI RAATTY 5 cut(s) 144, 1216, 1317, 2809, 3000
AseI ATTAAT 1 cut(s) 942
AsiGI ACCGGT 1 cut(s) 741
Asp700I GAANNNNTTC 3 cut(s) 144, 1873, 2123
AspA2I CCTAGG 2 cut(s) 1696, 3358
AspLEI GCGC 5 cut(s) 273, 339, 622, 3385, 3409
AspS9I GGNCC 6 cut(s) 2482, 2570, 2995, 3129, 3353, 3479
AsuHPI GGTGA 5 cut(s) 1628, 1827, 2212, 2812, 2902
AvaII GGWCC 3 cut(s) 3129, 3353, 3479
AvrII CCTAGG 2 cut(s) 1696, 3358
BalI TGGCCA 4 cut(s) 267, 680, 1328, 2393
BamHI GGATCC 1 cut(s) 3283
BanII GRGCYC 2 cut(s) 1572, 2166
BarI GAAGNNNNNNTAC 2 cut(s) 270, 302
BauI CACGAG 4 cut(s) 82, 213, 833, 3250
BbsI GAAGAC 3 cut(s) 264, 744, 1668
Bbv12I GWGCWC 1 cut(s) 1572
BbvCI CCTCAGC 2 cut(s) 2981, 3279
BccI CCATC 9 cut(s) 532, 1096, 1205, 1929, 2126, 2188, 2215, 2383, 2755
BceAI ACGGC 5 cut(s) 63, 162, 952, 3214, 3336
BciT130I CCWGG 6 cut(s) 1063, 2303, 2318, 2440, 2468, 3134
BciVI GTATCC 1 cut(s) 1248
BcoDI GTCTC 4 cut(s) 38, 67, 694, 2948
BfaI CTAG 8 cut(s) 275, 1212, 1697, 1830, 1854, 2330, 2498, 3359
BfmI CTRYAG 2 cut(s) 797, 1335
BfoI RGCGCY 4 cut(s) 274, 623, 3386, 3410
BfuAI ACCTGC 1 cut(s) 1789
BfuI GTATCC 1 cut(s) 1248
BglII AGATCT 1 cut(s) 1448
BlnI CCTAGG 2 cut(s) 1696, 3358
BlpI GCTNAGC 1 cut(s) 101
Bme1390I CCNGG 6 cut(s) 1063, 2303, 2318, 2440, 2468, 3134
Bme18I GGWCC 3 cut(s) 3129, 3353, 3479
BmgT120I GGNCC 6 cut(s) 2482, 2570, 2995, 3129, 3353, 3479
BmiI GGNNCC 8 cut(s) 1462, 2226, 2556, 2571, 3130, 3131, 3285, 3355
BmrFI CCNGG 6 cut(s) 1063, 2303, 2318, 2440, 2468, 3134
BmsI GCATC 8 cut(s) 819, 919, 1168, 1276, 1510, 1696, 2620, 3139
BpiI GAAGAC 3 cut(s) 264, 744, 1668
BpmI CTGGAG 1 cut(s) 2352
Bpu10I CCTNAGC 3 cut(s) 893, 2981, 3279
Bpu1102I GCTNAGC 1 cut(s) 101
BpuEI CTTGAG 3 cut(s) 1061, 2443, 2945
BsaAI YACGTR 2 cut(s) 572, 2540
BsaBI GATNNNNATC 1 cut(s) 244
BsaHI GRCGYC 1 cut(s) 50
BsaWI WCCGGW 3 cut(s) 741, 1047, 2857
BsaXI ACNNNNNCTCC 4 cut(s) 539, 569, 2862, 2892
Bsc4I CCNNNNNNNGG 3 cut(s) 1902, 2473, 2753
Bse118I RCCGGY 2 cut(s) 741, 3042
Bse1I ACTGG 3 cut(s) 1953, 2092, 2581
Bse3DI GCAATG 4 cut(s) 1424, 2348, 2478, 3208
Bse8I GATNNNNATC 1 cut(s) 244
BseBI CCWGG 6 cut(s) 1063, 2303, 2318, 2440, 2468, 3134
BseGI GGATG 7 cut(s) 663, 834, 1088, 1279, 1525, 2137, 2212
BseJI GATNNNNATC 1 cut(s) 244
BseLI CCNNNNNNNGG 3 cut(s) 1902, 2473, 2753
BseMI GCAATG 4 cut(s) 1424, 2348, 2478, 3208
BseNI ACTGG 3 cut(s) 1953, 2092, 2581
BseRI GAGGAG 2 cut(s) 851, 2353
BseX3I CGGCCG 1 cut(s) 36
BseYI CCCAGC 1 cut(s) 1709
BsgI GTGCAG 4 cut(s) 615, 1709, 1878, 2603
Bsh1236I CGCG 1 cut(s) 3096
Bsh1285I CGRYCG 4 cut(s) 39, 2611, 3195, 3233
BshFI GGCC 8 cut(s) 38, 267, 680, 1328, 2393, 2484, 2572, 2996
BshTI ACCGGT 1 cut(s) 741
BsiEI CGRYCG 4 cut(s) 39, 2611, 3195, 3233
BsiHKAI GWGCWC 1 cut(s) 1572
BsiSI CCGG 6 cut(s) 35, 742, 1048, 2858, 3043, 3388
BslFI GGGAC 4 cut(s) 1217, 1809, 2456, 3142
BslI CCNNNNNNNGG 3 cut(s) 1902, 2473, 2753
BsmAI GTCTC 4 cut(s) 38, 67, 694, 2948
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 4 cut(s) 1217, 1809, 2456, 3142
BsmI GAATGC 2 cut(s) 315, 468
BsnI GGCC 8 cut(s) 38, 267, 680, 1328, 2393, 2484, 2572, 2996
Bsp1286I GDGCHC 2 cut(s) 1572, 2166
Bsp1407I TGTACA 2 cut(s) 1393, 3490
Bsp1720I GCTNAGC 1 cut(s) 101
Bsp19I CCATGG 2 cut(s) 24, 2614
BspANI GGCC 8 cut(s) 38, 267, 680, 1328, 2393, 2484, 2572, 2996
BspFNI CGCG 1 cut(s) 3096
BspHI TCATGA 2 cut(s) 1627, 2190
BspLI GGNNCC 8 cut(s) 1462, 2226, 2556, 2571, 3130, 3131, 3285, 3355
BspMAI CTGCAG 1 cut(s) 1339
BspMI ACCTGC 1 cut(s) 1789
BspPI GGATC 9 cut(s) 1039, 1887, 1968, 1981, 2072, 2320, 2626, 3278, 3291
BspQI GCTCTTC 1 cut(s) 1032
BsrBI CCGCTC 1 cut(s) 3351
BsrDI GCAATG 4 cut(s) 1424, 2348, 2478, 3208
BsrFI RCCGGY 2 cut(s) 741, 3042
BsrGI TGTACA 2 cut(s) 1393, 3490
BsrI ACTGG 3 cut(s) 1953, 2092, 2581
BssAI RCCGGY 2 cut(s) 741, 3042
BssNI GRCGYC 1 cut(s) 50
BssSI CACGAG 4 cut(s) 82, 213, 833, 3250
BssT1I CCWWGG 7 cut(s) 24, 262, 1154, 1696, 2614, 3358, 3482
Bst2BI CACGAG 4 cut(s) 82, 213, 833, 3250
Bst2UI CCWGG 6 cut(s) 1063, 2303, 2318, 2440, 2468, 3134
Bst4CI ACNGT 9 cut(s) 955, 1069, 1356, 1749, 2661, 2674, 2878, 2972, 3460
Bst6I CTCTTC 5 cut(s) 36, 67, 1032, 1335, 1404
BstACI GRCGYC 1 cut(s) 50
BstAUI TGTACA 2 cut(s) 1393, 3490
BstBAI YACGTR 2 cut(s) 572, 2540
BstDSI CCRYGG 2 cut(s) 24, 2614
BstEII GGTNACC 1 cut(s) 2297
BstENI CCTNNNNNAGG 1 cut(s) 1900
BstF5I GGATG 7 cut(s) 663, 834, 1088, 1279, 1525, 2137, 2212
BstFNI CGCG 1 cut(s) 3096
BstH2I RGCGCY 4 cut(s) 274, 623, 3386, 3410
BstHHI GCGC 5 cut(s) 273, 339, 622, 3385, 3409
BstMAI GTCTC 4 cut(s) 38, 67, 694, 2948
BstMCI CGRYCG 4 cut(s) 39, 2611, 3195, 3233
BstMWI GCNNNNNNNGC 6 cut(s) 619, 973, 1334, 2993, 3149, 3380
BstNI CCWGG 6 cut(s) 1063, 2303, 2318, 2440, 2468, 3134
BstNSI RCATGY 3 cut(s) 651, 3259, 3511
BstPI GGTNACC 1 cut(s) 2297
BstSCI CCNGG 6 cut(s) 1061, 2301, 2316, 2438, 2466, 3132
BstSFI CTRYAG 2 cut(s) 797, 1335
BstUI CGCG 1 cut(s) 3096
BstV2I GAAGAC 3 cut(s) 264, 744, 1668
BstX2I RGATCY 7 cut(s) 1044, 1448, 1973, 2077, 2325, 2618, 3283
BstXI CCANNNNNNTGG 2 cut(s) 2235, 3088
BstYI RGATCY 7 cut(s) 1044, 1448, 1973, 2077, 2325, 2618, 3283
BstZI CGGCCG 1 cut(s) 36
BsuI GTATCC 1 cut(s) 1248
BsuRI GGCC 8 cut(s) 38, 267, 680, 1328, 2393, 2484, 2572, 2996
BtgI CCRYGG 2 cut(s) 24, 2614
BtsCI GGATG 7 cut(s) 663, 834, 1088, 1279, 1525, 2137, 2212
BtsI GCAGTG 1 cut(s) 3145
BtsIMutI CAGTG 5 cut(s) 1303, 2666, 2679, 2726, 3145
BveI ACCTGC 1 cut(s) 1789
CaiI CAGNNNCTG 2 cut(s) 602, 2590
CciI TCATGA 2 cut(s) 1627, 2190
CfoI GCGC 5 cut(s) 273, 339, 622, 3385, 3409
Cfr10I RCCGGY 2 cut(s) 741, 3042
Cfr13I GGNCC 6 cut(s) 2482, 2570, 2995, 3129, 3353, 3479
CseI GACGC 2 cut(s) 39, 1214
Csp6I GTAC 5 cut(s) 556, 569, 1394, 2587, 3491
CspAI ACCGGT 1 cut(s) 741
CspCI CAANNNNNGTGG 2 cut(s) 3315, 3350
CviQI GTAC 5 cut(s) 556, 569, 1394, 2587, 3491
DraI TTTAAA 2 cut(s) 2289, 3295
DrdI GACNNNNNNGTC 2 cut(s) 52, 958
DseDI GACNNNNNNGTC 2 cut(s) 52, 958
EaeI YGGCCR 5 cut(s) 36, 265, 678, 1326, 2391
EagI CGGCCG 1 cut(s) 36
Eam1104I CTCTTC 5 cut(s) 36, 67, 1032, 1335, 1404
EarI CTCTTC 5 cut(s) 36, 67, 1032, 1335, 1404
Ecl136II GAGCTC 1 cut(s) 1570
EclXI CGGCCG 1 cut(s) 36
Eco130I CCWWGG 7 cut(s) 24, 262, 1154, 1696, 2614, 3358, 3482
Eco24I GRGCYC 2 cut(s) 1572, 2166
Eco32I GATATC 1 cut(s) 804
Eco47I GGWCC 3 cut(s) 3129, 3353, 3479
Eco47III AGCGCT 1 cut(s) 3384
Eco52I CGGCCG 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 1570
Eco57I CTGAAG 5 cut(s) 270, 995, 1429, 1680, 2958
Eco91I GGTNACC 1 cut(s) 2297
EcoICRI GAGCTC 1 cut(s) 1570
EcoNI CCTNNNNNAGG 1 cut(s) 1900
EcoO109I RGGNCCY 2 cut(s) 2482, 3129
EcoO65I GGTNACC 1 cut(s) 2297
EcoRII CCWGG 6 cut(s) 1061, 2301, 2316, 2438, 2466, 3132
EcoRV GATATC 1 cut(s) 804
EcoT14I CCWWGG 7 cut(s) 24, 262, 1154, 1696, 2614, 3358, 3482
EcoT38I GRGCYC 2 cut(s) 1572, 2166
ErhI CCWWGG 7 cut(s) 24, 262, 1154, 1696, 2614, 3358, 3482
Esp3I CGTCTC 1 cut(s) 38
FalI AAGNNNNNCTT 8 cut(s) 484, 516, 1014, 1046, 1147, 1179, 3289, 3321
FaqI GGGAC 4 cut(s) 1217, 1809, 2456, 3142
FauI CCCGC 1 cut(s) 3338
FblI GTMKAC 1 cut(s) 111
FokI GGATG 7 cut(s) 670, 841, 1075, 1266, 1532, 2144, 2219
FriOI GRGCYC 2 cut(s) 1572, 2166
FspBI CTAG 8 cut(s) 275, 1212, 1697, 1830, 1854, 2330, 2498, 3359
GlaI GCGC 5 cut(s) 272, 338, 621, 3384, 3408
GsaI CCCAGC 1 cut(s) 1713
GsuI CTGGAG 1 cut(s) 2352
HaeII RGCGCY 4 cut(s) 274, 623, 3386, 3410
HaeIII GGCC 8 cut(s) 38, 267, 680, 1328, 2393, 2484, 2572, 2996
HapII CCGG 6 cut(s) 35, 742, 1048, 2858, 3043, 3388
HgaI GACGC 2 cut(s) 39, 1214
HhaI GCGC 5 cut(s) 273, 339, 622, 3385, 3409
Hin1I GRCGYC 1 cut(s) 50
Hin6I GCGC 5 cut(s) 271, 337, 620, 3383, 3407
HinP1I GCGC 5 cut(s) 271, 337, 620, 3383, 3407
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 6 cut(s) 413, 477, 2598, 2791, 2963, 3224
HpaII CCGG 6 cut(s) 35, 742, 1048, 2858, 3043, 3388
HphI GGTGA 5 cut(s) 1628, 1827, 2212, 2812, 2902
Hpy166II GTNNAC 3 cut(s) 112, 569, 1835
Hpy8I GTNNAC 3 cut(s) 112, 569, 1835
Hpy99I CGWCG 3 cut(s) 55, 1789, 3200
HpyCH4III ACNGT 9 cut(s) 955, 1069, 1356, 1749, 2661, 2674, 2878, 2972, 3460
HpyCH4IV ACGT 6 cut(s) 406, 436, 571, 592, 700, 2539
HpyF10VI GCNNNNNNNGC 6 cut(s) 619, 973, 1334, 2993, 3149, 3380
HpySE526I ACGT 6 cut(s) 406, 436, 571, 592, 700, 2539
Hsp92I GRCGYC 1 cut(s) 50
HspAI GCGC 5 cut(s) 271, 337, 620, 3383, 3407
KflI GGGWCCC 1 cut(s) 3129
KroI GCCGGC 1 cut(s) 3042
KroNI GCCGGC 1 cut(s) 3044
LguI GCTCTTC 1 cut(s) 1032
LmnI GCTCC 9 cut(s) 562, 727, 1170, 1460, 1948, 2230, 3348, 3390, 3398
LweI GCATC 8 cut(s) 819, 919, 1168, 1276, 1510, 1696, 2620, 3139
MaeI CTAG 8 cut(s) 275, 1212, 1697, 1830, 1854, 2330, 2498, 3359
MaeII ACGT 6 cut(s) 406, 436, 571, 592, 700, 2539
MbiI CCGCTC 1 cut(s) 3351
MflI RGATCY 7 cut(s) 1044, 1448, 1973, 2077, 2325, 2618, 3283
MhlI GDGCHC 2 cut(s) 1572, 2166
MlsI TGGCCA 4 cut(s) 267, 680, 1328, 2393
MluI ACGCGT 1 cut(s) 3094
MluNI TGGCCA 4 cut(s) 267, 680, 1328, 2393
MlyI GAGTC 6 cut(s) 107, 118, 156, 1421, 1591, 2950
MmeI TCCRAC 5 cut(s) 152, 800, 854, 1487, 3376
Mox20I TGGCCA 4 cut(s) 267, 680, 1328, 2393
MroNI GCCGGC 1 cut(s) 3042
MroXI GAANNNNTTC 3 cut(s) 144, 1873, 2123
MscI TGGCCA 4 cut(s) 267, 680, 1328, 2393
MslI CAYNNNNRTG 5 cut(s) 699, 1284, 1698, 3086, 3254
Msp20I TGGCCA 4 cut(s) 267, 680, 1328, 2393
MspA1I CMGCKG 2 cut(s) 599, 2454
MspI CCGG 6 cut(s) 35, 742, 1048, 2858, 3043, 3388
MspR9I CCNGG 6 cut(s) 1063, 2303, 2318, 2440, 2468, 3134
Mva1269I GAATGC 2 cut(s) 315, 468
MvaI CCWGG 6 cut(s) 1063, 2303, 2318, 2440, 2468, 3134
MvnI CGCG 1 cut(s) 3096
MwoI GCNNNNNNNGC 6 cut(s) 619, 973, 1334, 2993, 3149, 3380
NaeI GCCGGC 1 cut(s) 3044
NcoI CCATGG 2 cut(s) 24, 2614
NgoMIV GCCGGC 1 cut(s) 3042
NlaIV GGNNCC 8 cut(s) 1462, 2226, 2556, 2571, 3130, 3131, 3285, 3355
NmeAIII GCCGAG 2 cut(s) 249, 2956
NmuCI GTSAC 4 cut(s) 1801, 1993, 2344, 3182
NspI RCATGY 3 cut(s) 651, 3259, 3511
OliI CACNNNNGTG 1 cut(s) 1698
PagI TCATGA 2 cut(s) 1627, 2190
PasI CCCWGGG 1 cut(s) 3133
PciI ACATGT 1 cut(s) 3507
PciSI GCTCTTC 1 cut(s) 1032
PcsI WCGNNNNNNNCGW 1 cut(s) 1888
PctI GAATGC 2 cut(s) 315, 468
PdiI GCCGGC 1 cut(s) 3044
PdmI GAANNNNTTC 3 cut(s) 144, 1873, 2123
PflFI GACNNNGTC 1 cut(s) 49
PfoI TCCNGGA 1 cut(s) 1061
PinAI ACCGGT 1 cut(s) 741
Ple19I CGATCG 3 cut(s) 2611, 3195, 3233
PleI GAGTC 6 cut(s) 107, 118, 156, 1420, 1591, 2950
PpsI GAGTC 6 cut(s) 107, 118, 156, 1420, 1591, 2950
Ppu21I YACGTR 2 cut(s) 572, 2540
PpuMI RGGWCCY 1 cut(s) 3129
PscI ACATGT 1 cut(s) 3507
PshBI ATTAAT 1 cut(s) 942
Psp124BI GAGCTC 1 cut(s) 1572
Psp5II RGGWCCY 1 cut(s) 3129
Psp6I CCWGG 6 cut(s) 1061, 2301, 2316, 2438, 2466, 3132
PspEI GGTNACC 1 cut(s) 2297
PspFI CCCAGC 1 cut(s) 1709
PspGI CCWGG 6 cut(s) 1061, 2301, 2316, 2438, 2466, 3132
PspN4I GGNNCC 8 cut(s) 1462, 2226, 2556, 2571, 3130, 3131, 3285, 3355
PspPI GGNCC 6 cut(s) 2482, 2570, 2995, 3129, 3353, 3479
PspPPI RGGWCCY 1 cut(s) 3129
PstI CTGCAG 1 cut(s) 1339
PstNI CAGNNNCTG 2 cut(s) 602, 2590
PsuI RGATCY 7 cut(s) 1044, 1448, 1973, 2077, 2325, 2618, 3283
PsyI GACNNNGTC 1 cut(s) 49
PvuI CGATCG 3 cut(s) 2611, 3195, 3233
PvuII CAGCTG 2 cut(s) 599, 2454
RsaI GTAC 5 cut(s) 557, 570, 1395, 2588, 3492
RsaNI GTAC 5 cut(s) 556, 569, 1394, 2587, 3491
RseI CAYNNNNRTG 5 cut(s) 699, 1284, 1698, 3086, 3254
SacI GAGCTC 1 cut(s) 1572
SalI GTCGAC 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 1032
Sau96I GGNCC 6 cut(s) 2482, 2570, 2995, 3129, 3353, 3479
SchI GAGTC 6 cut(s) 107, 118, 156, 1421, 1591, 2950
ScrFI CCNGG 6 cut(s) 1063, 2303, 2318, 2440, 2468, 3134
SduI GDGCHC 2 cut(s) 1572, 2166
SfaNI GCATC 8 cut(s) 819, 919, 1168, 1276, 1510, 1696, 2620, 3139
SfcI CTRYAG 2 cut(s) 797, 1335
SinI GGWCC 3 cut(s) 3129, 3353, 3479
SmiMI CAYNNNNRTG 5 cut(s) 699, 1284, 1698, 3086, 3254
SmlI CTYRAG 3 cut(s) 1040, 2458, 2960
SmoI CTYRAG 3 cut(s) 1040, 2458, 2960
SspMI CTAG 8 cut(s) 275, 1212, 1697, 1830, 1854, 2330, 2498, 3359
SstI GAGCTC 1 cut(s) 1572
StyD4I CCNGG 6 cut(s) 1061, 2301, 2316, 2438, 2466, 3132
StyI CCWWGG 7 cut(s) 24, 262, 1154, 1696, 2614, 3358, 3482
TaaI ACNGT 9 cut(s) 955, 1069, 1356, 1749, 2661, 2674, 2878, 2972, 3460
TaiI ACGT 6 cut(s) 409, 439, 574, 595, 703, 2542
TaqI TCGA 7 cut(s) 111, 321, 422, 3191, 3195, 3229, 3233
TatI WGTACW 3 cut(s) 555, 1393, 3490
TauI GCSGC 2 cut(s) 15, 2739
TscAI CASTG 5 cut(s) 1303, 2666, 2679, 2733, 3145
TseFI GTSAC 4 cut(s) 1801, 1993, 2344, 3182
Tsp45I GTSAC 4 cut(s) 1801, 1993, 2344, 3182
TspGWI ACGGA 2 cut(s) 109, 3013
TspRI CASTG 5 cut(s) 1303, 2666, 2679, 2733, 3145
Tth111I GACNNNGTC 1 cut(s) 49
VpaK11BI GGWCC 3 cut(s) 3129, 3353, 3479
VspI ATTAAT 1 cut(s) 942
XagI CCTNNNNNAGG 1 cut(s) 1900
XapI RAATTY 5 cut(s) 144, 1216, 1317, 2809, 3000
XbaI TCTAGA 1 cut(s) 2497
XceI RCATGY 3 cut(s) 651, 3259, 3511
XmaJI CCTAGG 2 cut(s) 1696, 3358
XmiI GTMKAC 1 cut(s) 111
XmnI GAANNNNTTC 3 cut(s) 144, 1873, 2123
XspI CTAG 8 cut(s) 275, 1212, 1697, 1830, 1854, 2330, 2498, 3359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.