MD15G1428100.v1.1
TCP Family

T-complex protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0005785
Physical Location & Seq
Forward (+)
52862632 .. 52869615
6984 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1428100.v1.1.491

Sequence Viewer

Length: 3516 bp
ATGGTGGGGGGAGGCGGCGGCGGTGTAGCCATGGATTTTCCGGCCGACGAAAGGGCGTCGTCCTTCTCTTCGCCTCCGAGACTTCCCACGAGGCTCAGACGGAGGCTCAGCCTTGTCGACTGTAACAAGACTCCTAACACCGCCGAACAAATTCAGGCCAAGCTCAGACTCGCCGATCTTCGCCGTCAGGAACACTATGAAAAGTTGTCAAGCAAGGCACGGGCAAAGCCGAGGAGTCCCTCCCGATCTTCATCTGAAGAGGAAGACCTTGGCCAGCGCCTTGAAGCCAAGCTACAAGCTGCTGAGAAGAAAAGGTTGAGTATTCTTGAAAACGCTCAAATGCGCTTGGCAAAATTGGATGAATTGCGGCAAGCAGCTAAATGTGAGGTAGAAATGCGTGTTGAAAAGGAACGTCAAAAGCTTGGGTCTAAAGTGGAATCACGTTTTCAGCAGGCAGAGGCAAATAGAATGCTTATGCTCAAAGCTTATAGACAAAGAAGGGCTACTCTGAAGGAGAGGACATCTCAGTCCTTATTGCGGAAGATGGCTTGGGAGAAGAAGTACAAGGAGCGAGTACGTGCTGCAATTAGCCAAAAACGTGCAGCTGCTGAAAAAAAGCGATTGGCACTTTTGGAAGCAGAGAAGAATAGGGCTTGTGCAAGGATGTTGCAAGTGCAAAGAGTGGCTAAGTCTGTCTCTCATCAACGTGAGATTGAAAGGAGGGCAAAGAGGGAGCAGTTAGAAAATCGTTTGCAAAGGGCAAAGAGGCAAAGAGCAGAGTATCTAAGGCAAAGAGGAAAGCTACAGATATCTTTTCAAGTGAGTTGGAATAGGATGCACGAGGAGGCTGATCTTCTTTCTAGGAAGTTAGCAAGGTGTTGGAGGGGTTTCCTCAGGCTGAGGAGAACTACACTTGCTTTGGCAACAGATTATGATGCCTTGAAAATTACTGAAAAGACTGTCAAGTCAATGCCGTTTGAGCAGCTTGCAATTTTGATTGAATCAACTGATACCCTTCAGACTGTGAAAGCTCTTCTTGACCGGCTTGAGAGCCGGTTAAAAGTTTCCAGGGCTGTTGCCTCAATAAATTATCCATCCAACTTTGATAACATAGATCACCTTCTCAAACGAGTTGCTTCCCCAAAAAAGAGGACTACACCAAGGCCATCTTTAAGGAGTAGAAACGCAAATAAATCTTCTTCCATCAGGGACACAGCTAGAAATTCTGTTAAATTATCAAGATATCCGATGAGAGTGGTTCTTTGTGCTTACATGATTTTGGGTCATCCAGATGCGGTTTTCAGTGGTAGAGGAGAGCGTGAAATTTCTCTGGCCAAATCTGCAGAAGAGTTTGTTAGACAGTTTGAGTTACTACTAAAGGTTATATTCGATGGCCCCATACAAAGTTCTGATGATGAGTCTGATCCCGCATTGCCCAAACATTTGACCTTCAGATCTCAGCTTGGAGCCTTTGATAAAGCATGGTGCTCCTACTTGAATTGTTTTGTGGGTTGGAAGGTTAAGGATGCTCAGTTATTAGTGGAAGATTTGGTGAGAGCAGCATGCCATTTAGAGCTCTCTATGATTCAAACTTGCAAGATGACTCCGGAAGGAGTGACTGGTGATCTTACTCATGATATGAAGGCTATTCAGAAACAGGTTACTGAAGACCAAAAGCTATTGAGGGAAAAAGTGCAGCACCTAGGTGGAGATGCTGGGATCGAGCGTATGAAATCTGCTATATCTGAAACACGGTTAAAATACTTTCAAGCAAAGGAAAATGGAAGCCCATCAGGGTTGCAGGTCACACACATTATTTCTCCAAGTCCCCCTAGTTCAACACTCAGTCCTTCTGCTAGTGCAGATAAGAGAAGTAATCCAGGTCGTGTAGTCCGATCCTTATTTAGGGAAGATGATACTTTTCATCATGGAGTTGTGTCCTCTGCTAGGAAAACCAGTTTGGATCAGCAGCTTGGATCTTCTTCACAAAAGTTGGTCACAGAGAATGAATTAATTGTGAATGAGTTTCTCCACGAGCAGAAGCAGGAATTTGCTGATATTTTTAATGTTACTGATGAAGATCCAAACAATGTTCAGTCAAAGATAAGACAGACAATGGAGAAGGCTTTTTGGGATGGTGTAATTGAATCTGTAAAAGAGGATGAGCCCAACTATGACAGAATAATTCAACTCATGATGGAGATGAGGGATGAAATCTGTGAGATGGCTCCACAGAGCTGGAAGCAAGAGATTTTTGATGCTATTGATGTGGATATTCTCTCTCAGGTTTTGAAATCCGGTAACCTGGACATTGACTACCTGGGAAAGATCCTAGAGTTTTCAATGGTCACTTTGCGAAGGCTGTCCTCTCCGGCGACTGATGATGAAATGATGGTCACATACCAGAGTTTAAGGAAAGAACTAGATGAGATATGTCAAACCAGGGACGACTCCAACTGCTCAAGTGTCCTGGCAATGATCAAGGGCCTGCGTTTTGTTCTAGAGCAGATTCAGGCGCTTAAACGAGAGATTAGCAAAGCACGTATAAGAATTATGAAACCTTTGTTAAAGGGGCCAACTGGTGTGGAATACCTGAGAAAAGCCTTTGCCAGTCGCCATGGGTCTCCCTCAGATGCCAATACCTCTATACCACTTACAGCACAGTGGCTTTCAGCAGTGTGGGATTGCAAAGATCAGGAGTGGCAAGAACATACAATCTCTTGCTCAACTCTGATGAGTGGTGATAATCCCTCTCAGGGATTTGTTCCTTCCACCGCCCTTAGAAGTGGTGGAAGCTTTCTGGTGAAATCAAATTCCCCTTCTACTTCTGCTTCTACTAATAGCACAGGTATTCAACAACCCGAATGTAAGGGAGAAACAGTTGATTTGTTGGTGAGGCTTGGTTTATTGAAGTTGGTTAGCGGTGTGTCTGGTTTGACCGAAGAGGCTCTACCTGAGACTTTCAAGCTTAACCATTCTAGGCTGAGGGCTGTTCAGGCTCAAATTCAGAAAATTATTGTTACTTCCATAAGCATCCTTATTTGCCGGCAAACCCTTTTAAGCGAGAGGGTAGTAACCAGCTCTGTAGACATGGAACACATAGTATCAAAATGCACTGAGCGACTCTTGGGCACCTTGGACAGTGTTGAAGAAGCAGGCATGGAGGAAATTGTTGAATCAATTAGTGACTTCTCGATTGACAGTAACAAAGTTGTAGACAGTGAGAAGCTTCGGTCAAGGAAGGCAGTTATGGCGAGCATGTTAGGAAGGAGCTTGCAAGCTGAGGATCCCGTGTTTAAAAGGGTTTCTCGTGCTGTATATATGGCTGCAAGGGGAGTGGTTCTTGGCGGAAGTGGATCCCTAGGAAGAAAATTAGCGGAAACAGCACTCCGGCAAGTTGGAGCTGTTGCGCTGACCGACAGTGTGGGGGAAGCCGCGGAGGTTTTAGTGGTGGCAGCCACCGTATCGGTTAGTGTTTATGGACCTTGGTATATACATCTGACTGAGAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tcp11

Protein Analysis

1172

Amino Acids

131.69

Weight (kDa)

9.4

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tcp11 PF05794 673 - 1167 2.9e-77 T-complex protein 11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 526, 964
Acc36I ACCTGC 1 cut(s) 1792
AccB1I GGYRCC 1 cut(s) 3131
AccI GTMKAC 3 cut(s) 117, 3087, 3216
AccII CGCG 1 cut(s) 3437
AccIII TCCGGA 1 cut(s) 1606
AcoI YGGCCR 3 cut(s) 42, 271, 1332
AcsI RAATTY 6 cut(s) 150, 1222, 1323, 2048, 2812, 3003
AcuI CTGAAG 5 cut(s) 276, 530, 1001, 1435, 1686
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 2 cut(s) 563, 576
AfiI CCNNNNNNNGG 5 cut(s) 51, 537, 1905, 1947, 2756
AflIII ACRYGT 1 cut(s) 3510
AjnI CCWGG 6 cut(s) 1067, 1879, 2304, 2319, 2441, 2469
AjuI GAANNNNNNNTTGG 2 cut(s) 1943, 1975
AleI CACNNNNGTG 1 cut(s) 1704
Alw21I GWGCWC 2 cut(s) 1490, 1578
Alw26I GTCTC 4 cut(s) 73, 700, 2628, 2951
AlwNI CAGNNNCTG 1 cut(s) 608
Aor13HI TCCGGA 1 cut(s) 1606
AoxI GGCC 8 cut(s) 42, 156, 271, 1163, 1332, 1393, 2485, 2573
ApoI RAATTY 6 cut(s) 150, 1222, 1323, 2048, 2812, 3003
AseI ATTAAT 1 cut(s) 2012
Asp700I GAANNNNTTC 1 cut(s) 150
AspA2I CCTAGG 2 cut(s) 1702, 3361
AspLEI GCGC 4 cut(s) 279, 345, 2518, 3412
AspS9I GGNCC 4 cut(s) 1394, 2485, 2573, 3482
AsuHPI GGTGA 6 cut(s) 1109, 1564, 1634, 2753, 2815, 2905
AvaII GGWCC 1 cut(s) 3482
AvrII CCTAGG 2 cut(s) 1702, 3361
AxyI CCTNAGG 1 cut(s) 893
BaeGI GKGCMC 1 cut(s) 3134
BalI TGGCCA 2 cut(s) 273, 1334
BamHI GGATCC 2 cut(s) 3286, 3356
BanI GGYRCC 1 cut(s) 3131
BanII GRGCYC 2 cut(s) 1578, 2169
BarI GAAGNNNNNNTAC 4 cut(s) 276, 308, 2934, 2966
BauI CACGAG 4 cut(s) 88, 839, 2033, 3309
BbsI GAAGAC 2 cut(s) 270, 1674
Bbv12I GWGCWC 2 cut(s) 1490, 1578
BbvCI CCTCAGC 3 cut(s) 899, 2984, 3282
BceAI ACGGC 2 cut(s) 168, 958
BciT130I CCWGG 6 cut(s) 1069, 1881, 2306, 2321, 2443, 2471
BclI TGATCA 1 cut(s) 2478
BcoDI GTCTC 4 cut(s) 73, 700, 2628, 2951
BfmI CTRYAG 3 cut(s) 803, 1341, 3084
BfoI RGCGCY 2 cut(s) 280, 2519
BfuAI ACCTGC 1 cut(s) 1792
BglII AGATCT 1 cut(s) 1454
BlnI CCTAGG 2 cut(s) 1702, 3361
BlpI GCTNAGC 1 cut(s) 107
Bme1390I CCNGG 6 cut(s) 1069, 1881, 2306, 2321, 2443, 2471
Bme18I GGWCC 1 cut(s) 3482
BmgT120I GGNCC 4 cut(s) 1394, 2485, 2573, 3482
BmiI GGNNCC 7 cut(s) 1396, 1468, 2229, 2574, 3133, 3288, 3358
BmrFI CCNGG 6 cut(s) 1069, 1881, 2306, 2321, 2443, 2471
BmsI GCATC 8 cut(s) 825, 925, 1282, 1516, 1702, 2248, 2623, 3042
BpiI GAAGAC 2 cut(s) 270, 1674
BplI GAGNNNNNCTC 2 cut(s) 508, 540
Bpu10I CCTNAGC 3 cut(s) 899, 2984, 3282
Bpu1102I GCTNAGC 1 cut(s) 107
BpuEI CTTGAG 2 cut(s) 1067, 2446
BsaAI YACGTR 2 cut(s) 578, 2543
BsaBI GATNNNNATC 2 cut(s) 250, 2079
BsaHI GRCGYC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 2628
BsaWI WCCGGW 2 cut(s) 1606, 2297
BsaXI ACNNNNNCTCC 4 cut(s) 545, 575, 2865, 2895
Bsc4I CCNNNNNNNGG 5 cut(s) 51, 537, 1905, 1947, 2756
Bse118I RCCGGY 3 cut(s) 1041, 1053, 3045
Bse1I ACTGG 4 cut(s) 1624, 1956, 2584, 2610
Bse21I CCTNAGG 1 cut(s) 893
Bse3DI GCAATG 2 cut(s) 1430, 2481
Bse8I GATNNNNATC 2 cut(s) 250, 2079
BseAI TCCGGA 1 cut(s) 1606
BseBI CCWGG 6 cut(s) 1069, 1881, 2306, 2321, 2443, 2471
BseJI GATNNNNATC 2 cut(s) 250, 2079
BseLI CCNNNNNNNGG 5 cut(s) 51, 537, 1905, 1947, 2756
BseMI GCAATG 2 cut(s) 1430, 2481
BseNI ACTGG 4 cut(s) 1624, 1956, 2584, 2610
BseRI GAGGAG 4 cut(s) 247, 857, 916, 1326
BseSI GKGCMC 1 cut(s) 3134
BseX3I CGGCCG 1 cut(s) 42
BseYI CCCAGC 1 cut(s) 1715
BsgI GTGCAG 3 cut(s) 621, 1715, 1881
Bsh1236I CGCG 1 cut(s) 3437
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 8 cut(s) 44, 158, 273, 1165, 1334, 1395, 2487, 2575
BshNI GGYRCC 1 cut(s) 3131
BsiEI CGRYCG 1 cut(s) 45
BsiHKAI GWGCWC 2 cut(s) 1490, 1578
BsiSI CCGG 8 cut(s) 41, 1042, 1054, 1607, 2298, 2372, 3046, 3391
BslFI GGGAC 4 cut(s) 222, 1223, 1812, 2459
BslI CCNNNNNNNGG 5 cut(s) 51, 537, 1905, 1947, 2756
BsmAI GTCTC 4 cut(s) 73, 700, 2628, 2951
BsmFI GGGAC 4 cut(s) 222, 1223, 1812, 2459
BsmI GAATGC 1 cut(s) 474
BsnI GGCC 8 cut(s) 44, 158, 273, 1165, 1334, 1395, 2487, 2575
Bso31I GGTCTC 1 cut(s) 2628
Bsp1286I GDGCHC 4 cut(s) 1490, 1578, 2169, 3134
Bsp13I TCCGGA 1 cut(s) 1606
Bsp1720I GCTNAGC 1 cut(s) 107
Bsp19I CCATGG 2 cut(s) 30, 2617
BspANI GGCC 8 cut(s) 44, 158, 273, 1165, 1334, 1395, 2487, 2575
BspEI TCCGGA 1 cut(s) 1606
BspFNI CGCG 1 cut(s) 3437
BspHI TCATGA 2 cut(s) 1633, 2193
BspLI GGNNCC 7 cut(s) 1396, 1468, 2229, 2574, 3133, 3288, 3358
BspMAI CTGCAG 1 cut(s) 1345
BspMI ACCTGC 1 cut(s) 1792
BspQI GCTCTTC 1 cut(s) 1038
BspT107I GGYRCC 1 cut(s) 3131
BspTNI GGTCTC 1 cut(s) 2628
BsrDI GCAATG 2 cut(s) 1430, 2481
BsrFI RCCGGY 3 cut(s) 1041, 1053, 3045
BsrI ACTGG 4 cut(s) 1624, 1956, 2584, 2610
BssAI RCCGGY 3 cut(s) 1041, 1053, 3045
BssNI GRCGYC 1 cut(s) 56
BssSI CACGAG 4 cut(s) 88, 839, 2033, 3309
BssT1I CCWWGG 8 cut(s) 30, 268, 1160, 1702, 2617, 3135, 3361, 3485
Bst2BI CACGAG 4 cut(s) 88, 839, 2033, 3309
Bst2UI CCWGG 6 cut(s) 1069, 1881, 2306, 2321, 2443, 2471
Bst6I CTCTTC 5 cut(s) 73, 252, 1038, 1341, 2937
BstACI GRCGYC 1 cut(s) 56
BstBAI YACGTR 2 cut(s) 578, 2543
BstDSI CCRYGG 3 cut(s) 30, 2617, 3435
BstEII GGTNACC 1 cut(s) 2300
BstENI CCTNNNNNAGG 2 cut(s) 1903, 1945
BstFNI CGCG 1 cut(s) 3437
BstH2I RGCGCY 2 cut(s) 280, 2519
BstHHI GCGC 4 cut(s) 279, 345, 2518, 3412
BstMAI GTCTC 4 cut(s) 73, 700, 2628, 2951
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 5 cut(s) 979, 1340, 2996, 3251, 3383
BstNI CCWGG 6 cut(s) 1069, 1881, 2306, 2321, 2443, 2471
BstNSI RCATGY 3 cut(s) 1566, 3262, 3514
BstPI GGTNACC 1 cut(s) 2300
BstSCI CCNGG 6 cut(s) 1067, 1879, 2304, 2319, 2441, 2469
BstSFI CTRYAG 3 cut(s) 803, 1341, 3084
BstSLI GKGCMC 1 cut(s) 3134
BstUI CGCG 1 cut(s) 3437
BstV2I GAAGAC 2 cut(s) 270, 1674
BstX2I RGATCY 6 cut(s) 1454, 1976, 2080, 2328, 3286, 3356
BstXI CCANNNNNNTGG 1 cut(s) 2238
BstYI RGATCY 6 cut(s) 1454, 1976, 2080, 2328, 3286, 3356
BstZI CGGCCG 1 cut(s) 42
Bsu36I CCTNAGG 1 cut(s) 893
BsuRI GGCC 8 cut(s) 44, 158, 273, 1165, 1334, 1395, 2487, 2575
BtgI CCRYGG 3 cut(s) 30, 2617, 3435
BtsI GCAGTG 1 cut(s) 2682
BtsIMutI CAGTG 7 cut(s) 1309, 2669, 2682, 3114, 3148, 3226, 3427
BveI ACCTGC 1 cut(s) 1792
CaiI CAGNNNCTG 1 cut(s) 608
CciI TCATGA 2 cut(s) 1633, 2193
CfoI GCGC 4 cut(s) 279, 345, 2518, 3412
Cfr10I RCCGGY 3 cut(s) 1041, 1053, 3045
Cfr13I GGNCC 4 cut(s) 1394, 2485, 2573, 3482
Cfr42I CCGCGG 1 cut(s) 3438
CseI GACGC 1 cut(s) 45
Csp6I GTAC 2 cut(s) 562, 575
CspCI CAANNNNNGTGG 4 cut(s) 2565, 2600, 3318, 3353
CviQI GTAC 2 cut(s) 562, 575
DraI TTTAAA 1 cut(s) 3298
DrdI GACNNNNNNGTC 2 cut(s) 526, 964
DseDI GACNNNNNNGTC 2 cut(s) 526, 964
EaeI YGGCCR 3 cut(s) 42, 271, 1332
EagI CGGCCG 1 cut(s) 42
Eam1104I CTCTTC 5 cut(s) 73, 252, 1038, 1341, 2937
EarI CTCTTC 5 cut(s) 73, 252, 1038, 1341, 2937
EciI GGCGGA 1 cut(s) 3363
Ecl136II GAGCTC 1 cut(s) 1576
EclXI CGGCCG 1 cut(s) 42
Eco130I CCWWGG 8 cut(s) 30, 268, 1160, 1702, 2617, 3135, 3361, 3485
Eco24I GRGCYC 2 cut(s) 1578, 2169
Eco31I GGTCTC 1 cut(s) 2628
Eco32I GATATC 2 cut(s) 810, 1244
Eco47I GGWCC 1 cut(s) 3482
Eco52I CGGCCG 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 1576
Eco57I CTGAAG 5 cut(s) 276, 530, 1001, 1435, 1686
Eco81I CCTNAGG 1 cut(s) 893
Eco91I GGTNACC 1 cut(s) 2300
EcoICRI GAGCTC 1 cut(s) 1576
EcoNI CCTNNNNNAGG 2 cut(s) 1903, 1945
EcoO109I RGGNCCY 1 cut(s) 2485
EcoO65I GGTNACC 1 cut(s) 2300
EcoRII CCWGG 6 cut(s) 1067, 1879, 2304, 2319, 2441, 2469
EcoRV GATATC 2 cut(s) 810, 1244
EcoT14I CCWWGG 8 cut(s) 30, 268, 1160, 1702, 2617, 3135, 3361, 3485
EcoT38I GRGCYC 2 cut(s) 1578, 2169
ErhI CCWWGG 8 cut(s) 30, 268, 1160, 1702, 2617, 3135, 3361, 3485
FalI AAGNNNNNCTT 4 cut(s) 1020, 1052, 1153, 1185
FaqI GGGAC 4 cut(s) 222, 1223, 1812, 2459
FauI CCCGC 1 cut(s) 1435
FbaI TGATCA 1 cut(s) 2478
FblI GTMKAC 3 cut(s) 117, 3087, 3216
FriOI GRGCYC 2 cut(s) 1578, 2169
GlaI GCGC 4 cut(s) 278, 344, 2517, 3411
GsaI CCCAGC 1 cut(s) 1719
HaeII RGCGCY 2 cut(s) 280, 2519
HaeIII GGCC 8 cut(s) 44, 158, 273, 1165, 1334, 1395, 2487, 2575
HapII CCGG 8 cut(s) 41, 1042, 1054, 1607, 2298, 2372, 3046, 3391
HgaI GACGC 1 cut(s) 45
HhaI GCGC 4 cut(s) 279, 345, 2518, 3412
Hin1I GRCGYC 1 cut(s) 56
Hin6I GCGC 4 cut(s) 277, 343, 2516, 3410
HinP1I GCGC 4 cut(s) 277, 343, 2516, 3410
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HindIII AAGCTT 5 cut(s) 419, 483, 2794, 2966, 3227
HpaII CCGG 8 cut(s) 41, 1042, 1054, 1607, 2298, 2372, 3046, 3391
HphI GGTGA 6 cut(s) 1109, 1564, 1634, 2753, 2815, 2905
Hpy166II GTNNAC 3 cut(s) 118, 3088, 3217
Hpy8I GTNNAC 3 cut(s) 118, 3088, 3217
Hpy99I CGWCG 2 cut(s) 50, 61
HpyCH4IV ACGT 6 cut(s) 412, 442, 577, 598, 706, 2542
HpyF10VI GCNNNNNNNGC 5 cut(s) 979, 1340, 2996, 3251, 3383
HpySE526I ACGT 6 cut(s) 412, 442, 577, 598, 706, 2542
Hsp92I GRCGYC 1 cut(s) 56
HspAI GCGC 4 cut(s) 277, 343, 2516, 3410
Kpn2I TCCGGA 1 cut(s) 1606
KroI GCCGGC 1 cut(s) 3045
KroNI GCCGGC 1 cut(s) 3047
Ksp22I TGATCA 1 cut(s) 2478
KspI CCGCGG 1 cut(s) 3438
LguI GCTCTTC 1 cut(s) 1038
LmnI GCTCC 7 cut(s) 568, 733, 1466, 1493, 2233, 3270, 3401
LweI GCATC 8 cut(s) 825, 925, 1282, 1516, 1702, 2248, 2623, 3042
MaeII ACGT 6 cut(s) 412, 442, 577, 598, 706, 2542
MflI RGATCY 6 cut(s) 1454, 1976, 2080, 2328, 3286, 3356
MhlI GDGCHC 4 cut(s) 1490, 1578, 2169, 3134
MlsI TGGCCA 2 cut(s) 273, 1334
MluNI TGGCCA 2 cut(s) 273, 1334
MlyI GAGTC 7 cut(s) 124, 162, 244, 1427, 1597, 2444, 3117
MmeI TCCRAC 6 cut(s) 806, 860, 1122, 1493, 2478, 3379
Mox20I TGGCCA 2 cut(s) 273, 1334
MroI TCCGGA 1 cut(s) 1606
MroNI GCCGGC 1 cut(s) 3045
MroXI GAANNNNTTC 1 cut(s) 150
MscI TGGCCA 2 cut(s) 273, 1334
MslI CAYNNNNRTG 3 cut(s) 705, 1290, 1704
Msp20I TGGCCA 2 cut(s) 273, 1334
MspA1I CMGCKG 2 cut(s) 605, 3437
MspI CCGG 8 cut(s) 41, 1042, 1054, 1607, 2298, 2372, 3046, 3391
MspR9I CCNGG 6 cut(s) 1069, 1881, 2306, 2321, 2443, 2471
Mva1269I GAATGC 1 cut(s) 474
MvaI CCWGG 6 cut(s) 1069, 1881, 2306, 2321, 2443, 2471
MvnI CGCG 1 cut(s) 3437
MwoI GCNNNNNNNGC 5 cut(s) 979, 1340, 2996, 3251, 3383
NaeI GCCGGC 1 cut(s) 3047
NcoI CCATGG 2 cut(s) 30, 2617
NgoMIV GCCGGC 1 cut(s) 3045
NlaIV GGNNCC 7 cut(s) 1396, 1468, 2229, 2574, 3133, 3288, 3358
NmeAIII GCCGAG 1 cut(s) 255
NmuCI GTSAC 6 cut(s) 1615, 1804, 1996, 2347, 2395, 3185
NspI RCATGY 3 cut(s) 1566, 3262, 3514
OliI CACNNNNGTG 1 cut(s) 1704
PaeI GCATGC 1 cut(s) 1566
PagI TCATGA 2 cut(s) 1633, 2193
PciI ACATGT 1 cut(s) 3510
PciSI GCTCTTC 1 cut(s) 1038
PcsI WCGNNNNNNNCGW 1 cut(s) 1891
PctI GAATGC 1 cut(s) 474
PdiI GCCGGC 1 cut(s) 3047
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 6 cut(s) 437, 1001, 1585, 2147, 2509, 3176
PleI GAGTC 7 cut(s) 124, 162, 243, 1426, 1597, 2444, 3117
PpsI GAGTC 7 cut(s) 124, 162, 243, 1426, 1597, 2444, 3117
Ppu21I YACGTR 2 cut(s) 578, 2543
PscI ACATGT 1 cut(s) 3510
PshBI ATTAAT 1 cut(s) 2012
Psp124BI GAGCTC 1 cut(s) 1578
Psp6I CCWGG 6 cut(s) 1067, 1879, 2304, 2319, 2441, 2469
PspEI GGTNACC 1 cut(s) 2300
PspFI CCCAGC 1 cut(s) 1715
PspGI CCWGG 6 cut(s) 1067, 1879, 2304, 2319, 2441, 2469
PspN4I GGNNCC 7 cut(s) 1396, 1468, 2229, 2574, 3133, 3288, 3358
PspPI GGNCC 4 cut(s) 1394, 2485, 2573, 3482
PstI CTGCAG 1 cut(s) 1345
PstNI CAGNNNCTG 1 cut(s) 608
PsuI RGATCY 6 cut(s) 1454, 1976, 2080, 2328, 3286, 3356
PvuII CAGCTG 1 cut(s) 605
RsaI GTAC 2 cut(s) 563, 576
RsaNI GTAC 2 cut(s) 562, 575
RseI CAYNNNNRTG 3 cut(s) 705, 1290, 1704
SacI GAGCTC 1 cut(s) 1578
SacII CCGCGG 1 cut(s) 3438
SalI GTCGAC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 1038
Sau96I GGNCC 4 cut(s) 1394, 2485, 2573, 3482
SchI GAGTC 7 cut(s) 124, 162, 244, 1427, 1597, 2444, 3117
ScrFI CCNGG 6 cut(s) 1069, 1881, 2306, 2321, 2443, 2471
SduI GDGCHC 4 cut(s) 1490, 1578, 2169, 3134
SfaNI GCATC 8 cut(s) 825, 925, 1282, 1516, 1702, 2248, 2623, 3042
SfcI CTRYAG 3 cut(s) 803, 1341, 3084
Sfr303I CCGCGG 1 cut(s) 3438
SgrBI CCGCGG 1 cut(s) 3438
SinI GGWCC 1 cut(s) 3482
SmiMI CAYNNNNRTG 3 cut(s) 705, 1290, 1704
SmlI CTYRAG 2 cut(s) 1046, 2461
SmoI CTYRAG 2 cut(s) 1046, 2461
SphI GCATGC 1 cut(s) 1566
SstI GAGCTC 1 cut(s) 1578
StyD4I CCNGG 6 cut(s) 1067, 1879, 2304, 2319, 2441, 2469
StyI CCWWGG 8 cut(s) 30, 268, 1160, 1702, 2617, 3135, 3361, 3485
TaiI ACGT 6 cut(s) 415, 445, 580, 601, 709, 2545
TaqI TCGA 4 cut(s) 117, 1389, 1722, 3194
TaqII GACCGA 3 cut(s) 2954, 3222, 3431
TatI WGTACW 1 cut(s) 561
TauI GCSGC 4 cut(s) 18, 21, 370, 3437
TfiI GAWTC 6 cut(s) 437, 1001, 1585, 2147, 2509, 3176
TscAI CASTG 7 cut(s) 1309, 2669, 2682, 3121, 3148, 3226, 3427
TseFI GTSAC 6 cut(s) 1615, 1804, 1996, 2347, 2395, 3185
Tsp45I GTSAC 6 cut(s) 1615, 1804, 1996, 2347, 2395, 3185
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 7 cut(s) 1309, 2669, 2682, 3121, 3148, 3226, 3427
VpaK11BI GGWCC 1 cut(s) 3482
VspI ATTAAT 1 cut(s) 2012
XagI CCTNNNNNAGG 2 cut(s) 1903, 1945
XapI RAATTY 6 cut(s) 150, 1222, 1323, 2048, 2812, 3003
XbaI TCTAGA 1 cut(s) 2500
XceI RCATGY 3 cut(s) 1566, 3262, 3514
XmaJI CCTAGG 2 cut(s) 1702, 3361
XmiI GTMKAC 3 cut(s) 117, 3087, 3216
XmnI GAANNNNTTC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.