Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005785

Physical Location & Seq

Genomic Coordinates Forward (+)

37840045 .. 37843164

Gene Structure 3120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g37930.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGTAGGGGGAGGCGGCGGCATAGCCATGGACTTTCCGGCCGACGAAAGGGCGTCGTCCTTCTCTTCGCCTCCGAGACTTCCCACAAGGCTCAGACGGAGGCTCAGCCTTGTCGACTGTAACAAGAGTCATAACACCGCCGAACAAATTCAGGCCAAGCTCAGACTCGCCGATCTTCGCCGTCAGGAACACTATGAAAAGTTGTCAAGCAAGGCACGGGCGAAGCCGAGGAGTCCTTCCCGATCTTCATCTGAAGAGGAAGACCTTGGCCAGCGACTAGAAGCCAAGCTACAAGCTGCTGAGAAGAAAAGGTTGAGCATTCTTGAAAACGCTCAAATGCGCTTGGCGAAATTGGATGAATTGCGGCAAGCAGCTAAATGTGAGGTAGAAATGCGTGTTGAAAAGGAACGTCAAAAGCTTGGGTCGAAAGTGGAATCACGTTTTCAGCAGGCAGAGGCAAATAGAATGCTTATGCTCAAGGCTTATAGACAAAGAAGGGCTACTCTGAAGGAGAGGACATCTCAGTCCTTATTGCGGAAGATGGCTTGGGAGAAGAAGTACAAGGAACGAGTACGTGCTGCAATTAGCCAAAAACGTGCAGCTGCTGAAAAAAAGCGATTGGCACTTTTGGAAGCAGAGAAGAATAGGGCATGTGCAAGGATGCTGCAAGTGCAAAGAGTGGCTAAGTCTGTCTCTCATCAACGTGAGATTGAAAGGAGGGCAAAGAGGGAGCAGTTAGAAAATCGGTTGCAAAGGATATCTTTTCAAGTGAGTTGGAATAGGATGCACGAGGAGGCTGATCTTCTTTCCAGAAAGCTAGCAAGGTGTTGGAGGCGTTTCCTCAGGCTGAGGAGAACTACACTTGCTTTGGCAAAAGATTATGATGCCTTGAAAATTACTGAACAGGCTGTCAAGTCAATGCCATTTGAGCAGCTTGCAGTTTTGATTGAATCAACTGATACCCTTCAGACTGTGAAAGCTCTTCTTGACCGGCTTGAGAGTCGGTTAAAAGTTTCCAGGGCTGTTGCCTCAATAAATTATCCATCCAACTTTGATAACATAGATCACCTTCTTAAACGAGTTGCTTCCCCAAGAAAGAGGACTACACCAAGGCCATCTTTAAGGAGTAGAAGCGCAAATAAAGCATCTTCCATCAGGGACACAGCTAGAAATTCTGTTAAATTATCAAGATATCCGATGAGAGTGGTTCTTTGTGCTTACATGATTTTGGGTCATCCAGATGCGGTTTTCAGTGGTAGAGGAGAGCGTGAAATTTCTCTGGCCAAATCTGCAGAAGAGTTTGTTAGACAGTTTGAGTTACTACTAAAGGTTATATTCGACGGCCCCATGCAAAGTTCTGATGATGAGTCTGATTCCGCATCGCCCAAACATTTGACCTTCAGATCGATCAGTTGGAGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tcp11

Protein Analysis

475

Amino Acids

54.65

Weight (kDa)

10.54

Isoelectric Point (pI)

65.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22930 AT1G22930
fragaria_vesca	FvH4_5g28950 FvH4_5g28950 FvH4_5g28950 FvH4_5g28950
malus_domestica	MD08G1236100.v1.1 MD15G1428100.v1.1
prunus_persica	Prupe.1G572800_v2.0.a1 Prupe.1G572800_v2.0.a1
pyrus_communis	pycom08g20440 pycom08g20450 pycom15g37930
rosa_chinensis	RchiOBHm_Chr7g0221251
rosa_laevigata	RLG00000002166
rosa_multiflora	Rmu_sc0000324.1_g000018 Rmu_sc0003838.1_g000004 Rmu_sc0029316.1_g000001 Rmu_sc0032411.1_g000003
rosa_roxburghii	Rroxscaffold_3G00238480 Rroxscaffold_3G00238510
rosa_rugosa	Rorug07G0201800 Rorug07G0201900
rosa_samantha	Rh7AG340700 Rh7BG332000 Rh7CG358600 Rh7DG339500
rosa_wichuraiana	Rw7G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	523
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	7 cut(s)	15, 18, 138, 364, 535, 1244, 1377
AcoI	YGGCCR	3 cut(s)	39, 268, 1281
AcsI	RAATTY	3 cut(s)	147, 1171, 1272
AcuI	CTGAAG	4 cut(s)	273, 527, 950, 1384
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	2 cut(s)	560, 573
AfiI	CCNNNNNNNGG	2 cut(s)	48, 534
AgsI	TTSAA	6 cut(s)	326, 401, 713, 767, 892, 950
AjnI	CCWGG	1 cut(s)	1016
Alw26I	GTCTC	2 cut(s)	70, 697
AlwNI	CAGNNNCTG	1 cut(s)	605
AoxI	GGCC	6 cut(s)	39, 153, 268, 1112, 1281, 1342
ApeKI	GCWGC	7 cut(s)	296, 371, 578, 599, 602, 664, 931
ApoI	RAATTY	3 cut(s)	147, 1171, 1272
Asp700I	GAANNNNTTC	1 cut(s)	147
AspLEI	GCGC	2 cut(s)	342, 1136
AspS9I	GGNCC	1 cut(s)	1343
AsuHPI	GGTGA	1 cut(s)	1058
AsuNHI	GCTAGC	1 cut(s)	817
AxyI	CCTNAGG	1 cut(s)	842
BalI	TGGCCA	2 cut(s)	270, 1283
BarI	GAAGNNNNNNTAC	2 cut(s)	273, 305
BauI	CACGAG	1 cut(s)	788
BbsI	GAAGAC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	848
BbvI	GCAGC	7 cut(s)	283, 383, 565, 589, 611, 651, 943
BccI	CCATC	4 cut(s)	535, 1051, 1123, 1160
BceAI	ACGGC	2 cut(s)	165, 1357
BciT130I	CCWGG	1 cut(s)	1018
BcoDI	GTCTC	2 cut(s)	70, 697
BfaI	CTAG	3 cut(s)	278, 818, 1167
BfmI	CTRYAG	1 cut(s)	1290
BlpI	GCTNAGC	1 cut(s)	104
Bme1390I	CCNGG	1 cut(s)	1018
BmgT120I	GGNCC	1 cut(s)	1343
BmiI	GGNNCC	2 cut(s)	1345, 1418
BmrFI	CCNGG	1 cut(s)	1018
BmsI	GCATC	6 cut(s)	651, 774, 874, 1154, 1231, 1388
BmtI	GCTAGC	1 cut(s)	821
BpiI	GAAGAC	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	505, 537
Bpu10I	CCTNAGC	1 cut(s)	848
Bpu1102I	GCTNAGC	1 cut(s)	104
BpuEI	CTTGAG	2 cut(s)	461, 1016
Bsa29I	ATCGAT	1 cut(s)	1406
BsaAI	YACGTR	1 cut(s)	575
BsaBI	GATNNNNATC	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	5 cut(s)	27, 227, 265, 1017, 1109
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 534
Bse118I	RCCGGY	1 cut(s)	990
Bse21I	CCTNAGG	1 cut(s)	842
Bse8I	GATNNNNATC	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	1018
BseCI	ATCGAT	1 cut(s)	1406
BseDI	CCNNGG	5 cut(s)	27, 227, 265, 1017, 1109
BseGI	GGATG	5 cut(s)	361, 666, 789, 1043, 1234
BseJI	GATNNNNATC	1 cut(s)	247
BseLI	CCNNNNNNNGG	2 cut(s)	48, 534
BseMII	CTCAG	7 cut(s)	106, 118, 175, 291, 536, 839, 856
BseRI	GAGGAG	4 cut(s)	244, 806, 865, 1275
BseX3I	CGGCCG	1 cut(s)	39
BseXI	GCAGC	7 cut(s)	283, 383, 565, 589, 611, 651, 943
BsgI	GTGCAG	1 cut(s)	618
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	6 cut(s)	41, 155, 270, 1114, 1283, 1344
BshVI	ATCGAT	1 cut(s)	1406
BsiEI	CGRYCG	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	38, 991
BslFI	GGGAC	1 cut(s)	1172
BslI	CCNNNNNNNGG	2 cut(s)	48, 534
BsmAI	GTCTC	2 cut(s)	70, 697
BsmFI	GGGAC	1 cut(s)	1172
BsmI	GAATGC	2 cut(s)	318, 471
BsnI	GGCC	6 cut(s)	41, 155, 270, 1114, 1283, 1344
Bsp143I	GATC	6 cut(s)	172, 242, 799, 1063, 1403, 1407
Bsp1720I	GCTNAGC	1 cut(s)	104
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	7 cut(s)	15, 18, 138, 364, 535, 1244, 1377
BspANI	GGCC	6 cut(s)	41, 155, 270, 1114, 1283, 1344
BspCNI	CTCAG	7 cut(s)	105, 117, 174, 292, 535, 840, 855
BspDI	ATCGAT	1 cut(s)	1406
BspLI	GGNNCC	2 cut(s)	1345, 1418
BspMAI	CTGCAG	1 cut(s)	1294
BspOI	GCTAGC	1 cut(s)	821
BspQI	GCTCTTC	1 cut(s)	987
BsrFI	RCCGGY	1 cut(s)	990
BssAI	RCCGGY	1 cut(s)	990
BssECI	CCNNGG	5 cut(s)	27, 227, 265, 1017, 1109
BssMI	GATC	6 cut(s)	172, 242, 799, 1063, 1403, 1407
BssNI	GRCGYC	1 cut(s)	53
BssSI	CACGAG	1 cut(s)	788
BssT1I	CCWWGG	3 cut(s)	27, 265, 1109
Bst2BI	CACGAG	1 cut(s)	788
Bst2UI	CCWGG	1 cut(s)	1018
Bst4CI	ACNGT	3 cut(s)	119, 973, 1311
Bst6I	CTCTTC	4 cut(s)	70, 249, 987, 1290
BstACI	GRCGYC	1 cut(s)	53
BstBAI	YACGTR	1 cut(s)	575
BstC8I	GCNNGC	5 cut(s)	272, 369, 450, 819, 936
BstDEI	CTNAG	8 cut(s)	92, 104, 161, 300, 522, 684, 842, 848
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	5 cut(s)	361, 666, 789, 1043, 1234
BstHHI	GCGC	2 cut(s)	342, 1136
BstKTI	GATC	6 cut(s)	175, 245, 802, 1066, 1406, 1410
BstMAI	GTCTC	2 cut(s)	70, 697
BstMBI	GATC	6 cut(s)	172, 242, 799, 1063, 1403, 1407
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	4 cut(s)	670, 928, 1142, 1289
BstNI	CCWGG	1 cut(s)	1018
BstNSI	RCATGY	1 cut(s)	654
BstSCI	CCNGG	1 cut(s)	1016
BstSFI	CTRYAG	1 cut(s)	1290
BstV1I	GCAGC	7 cut(s)	283, 383, 565, 589, 611, 651, 943
BstV2I	GAAGAC	1 cut(s)	267
BstZI	CGGCCG	1 cut(s)	39
Bsu15I	ATCGAT	1 cut(s)	1406
Bsu36I	CCTNAGG	1 cut(s)	842
BsuRI	GGCC	6 cut(s)	41, 155, 270, 1114, 1283, 1344
BsuTUI	ATCGAT	1 cut(s)	1406
BtgI	CCRYGG	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	1365
BtsCI	GGATG	5 cut(s)	361, 666, 789, 1043, 1234
BtsIMutI	CAGTG	1 cut(s)	1258
Cac8I	GCNNGC	5 cut(s)	272, 369, 450, 819, 936
CaiI	CAGNNNCTG	1 cut(s)	605
CfoI	GCGC	2 cut(s)	342, 1136
Cfr10I	RCCGGY	1 cut(s)	990
Cfr13I	GGNCC	1 cut(s)	1343
ClaI	ATCGAT	1 cut(s)	1406
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	559, 572
CviAII	CATG	4 cut(s)	28, 651, 1222, 1348
CviQI	GTAC	2 cut(s)	559, 572
DdeI	CTNAG	8 cut(s)	92, 104, 161, 300, 522, 684, 842, 848
DpnI	GATC	6 cut(s)	174, 244, 801, 1065, 1405, 1409
DpnII	GATC	6 cut(s)	172, 242, 799, 1063, 1403, 1407
DrdI	GACNNNNNNGTC	1 cut(s)	523
DseDI	GACNNNNNNGTC	1 cut(s)	523
EaeI	YGGCCR	3 cut(s)	39, 268, 1281
EagI	CGGCCG	1 cut(s)	39
Eam1104I	CTCTTC	4 cut(s)	70, 249, 987, 1290
EarI	CTCTTC	4 cut(s)	70, 249, 987, 1290
EclXI	CGGCCG	1 cut(s)	39
Eco130I	CCWWGG	3 cut(s)	27, 265, 1109
Eco32I	GATATC	2 cut(s)	759, 1193
Eco52I	CGGCCG	1 cut(s)	39
Eco57I	CTGAAG	4 cut(s)	273, 527, 950, 1384
Eco81I	CCTNAGG	1 cut(s)	842
EcoRII	CCWGG	1 cut(s)	1016
EcoRV	GATATC	2 cut(s)	759, 1193
EcoT14I	CCWWGG	3 cut(s)	27, 265, 1109
ErhI	CCWWGG	3 cut(s)	27, 265, 1109
FaeI	CATG	4 cut(s)	31, 654, 1225, 1351
FalI	AAGNNNNNCTT	6 cut(s)	745, 777, 969, 1001, 1102, 1134
FaqI	GGGAC	1 cut(s)	1172
FatI	CATG	4 cut(s)	27, 650, 1221, 1347
FblI	GTMKAC	1 cut(s)	114
FokI	GGATG	5 cut(s)	368, 673, 796, 1030, 1221
FspBI	CTAG	3 cut(s)	278, 818, 1167
GlaI	GCGC	2 cut(s)	341, 1135
HaeIII	GGCC	6 cut(s)	41, 155, 270, 1114, 1283, 1344
HapII	CCGG	2 cut(s)	38, 991
HgaI	GACGC	1 cut(s)	42
HhaI	GCGC	2 cut(s)	342, 1136
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	4 cut(s)	31, 654, 1225, 1351
Hin6I	GCGC	2 cut(s)	340, 1134
HinP1I	GCGC	2 cut(s)	340, 1134
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	8 cut(s)	127, 165, 232, 434, 950, 1000, 1367, 1373
HpaII	CCGG	2 cut(s)	38, 991
HphI	GGTGA	1 cut(s)	1058
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188III	TCNNGA	7 cut(s)	185, 240, 323, 810, 986, 1188, 1238
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	3 cut(s)	47, 58, 1343
HpyAV	CCTTC	7 cut(s)	70, 246, 489, 502, 974, 1079, 1408
HpyCH4III	ACNGT	3 cut(s)	119, 973, 1311
HpyCH4IV	ACGT	5 cut(s)	409, 439, 574, 595, 703
HpyF10VI	GCNNNNNNNGC	4 cut(s)	670, 928, 1142, 1289
HpyF3I	CTNAG	8 cut(s)	92, 104, 161, 300, 522, 684, 842, 848
HpySE526I	ACGT	5 cut(s)	409, 439, 574, 595, 703
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	4 cut(s)	31, 654, 1225, 1351
HspAI	GCGC	2 cut(s)	340, 1134
Kzo9I	GATC	6 cut(s)	172, 242, 799, 1063, 1403, 1407
LguI	GCTCTTC	1 cut(s)	987
LmnI	GCTCC	2 cut(s)	730, 1416
Lsp1109I	GCAGC	7 cut(s)	283, 383, 565, 589, 611, 651, 943
LweI	GCATC	6 cut(s)	651, 774, 874, 1154, 1231, 1388
MaeI	CTAG	3 cut(s)	278, 818, 1167
MaeII	ACGT	5 cut(s)	409, 439, 574, 595, 703
MaeIII	GTNAC	2 cut(s)	119, 1317
MalI	GATC	6 cut(s)	174, 244, 801, 1065, 1405, 1409
MboI	GATC	6 cut(s)	172, 242, 799, 1063, 1403, 1407
MlsI	TGGCCA	2 cut(s)	270, 1283
MluCI	AATT	9 cut(s)	147, 350, 359, 582, 894, 1036, 1171, 1181, 1272
MluNI	TGGCCA	2 cut(s)	270, 1283
MlyI	GAGTC	5 cut(s)	136, 159, 241, 1009, 1376
MmeI	TCCRAC	4 cut(s)	755, 809, 1071, 1394
Mox20I	TGGCCA	2 cut(s)	270, 1283
MroXI	GAANNNNTTC	1 cut(s)	147
MscI	TGGCCA	2 cut(s)	270, 1283
MseI	TTAA	4 cut(s)	1007, 1074, 1121, 1179
MslI	CAYNNNNRTG	3 cut(s)	26, 702, 1239
Msp20I	TGGCCA	2 cut(s)	270, 1283
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	2 cut(s)	38, 991
MspR9I	CCNGG	1 cut(s)	1018
Mva1269I	GAATGC	2 cut(s)	318, 471
MvaI	CCWGG	1 cut(s)	1018
MwoI	GCNNNNNNNGC	4 cut(s)	670, 928, 1142, 1289
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	6 cut(s)	172, 242, 799, 1063, 1403, 1407
NheI	GCTAGC	1 cut(s)	817
NlaIII	CATG	4 cut(s)	31, 654, 1225, 1351
NlaIV	GGNNCC	2 cut(s)	1345, 1418
NmeAIII	GCCGAG	1 cut(s)	252
NspI	RCATGY	1 cut(s)	654
PciSI	GCTCTTC	1 cut(s)	987
PctI	GAATGC	2 cut(s)	318, 471
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	434, 950, 1373
PleI	GAGTC	5 cut(s)	135, 159, 240, 1008, 1375
PpsI	GAGTC	5 cut(s)	135, 159, 240, 1008, 1375
Ppu21I	YACGTR	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	1016
PspGI	CCWGG	1 cut(s)	1016
PspN4I	GGNNCC	2 cut(s)	1345, 1418
PspPI	GGNCC	1 cut(s)	1343
PstI	CTGCAG	1 cut(s)	1294
PstNI	CAGNNNCTG	1 cut(s)	605
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	2 cut(s)	560, 573
RsaNI	GTAC	2 cut(s)	559, 572
RseI	CAYNNNNRTG	3 cut(s)	26, 702, 1239
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	987
SaqAI	TTAA	4 cut(s)	1007, 1074, 1121, 1179
Sau3AI	GATC	6 cut(s)	172, 242, 799, 1063, 1403, 1407
Sau96I	GGNCC	1 cut(s)	1343
SchI	GAGTC	5 cut(s)	136, 159, 241, 1009, 1376
ScrFI	CCNGG	1 cut(s)	1018
SfaNI	GCATC	6 cut(s)	651, 774, 874, 1154, 1231, 1388
SfcI	CTRYAG	1 cut(s)	1290
SmiMI	CAYNNNNRTG	3 cut(s)	26, 702, 1239
SmlI	CTYRAG	2 cut(s)	476, 995
SmoI	CTYRAG	2 cut(s)	476, 995
Sse9I	AATT	9 cut(s)	147, 350, 359, 582, 894, 1036, 1171, 1181, 1272
SsiI	CCGC	7 cut(s)	15, 18, 138, 364, 535, 1244, 1377
SspMI	CTAG	3 cut(s)	278, 818, 1167
StyD4I	CCNGG	1 cut(s)	1016
StyI	CCWWGG	3 cut(s)	27, 265, 1109
TaaI	ACNGT	3 cut(s)	119, 973, 1311
TaiI	ACGT	5 cut(s)	412, 442, 577, 598, 706
TaqI	TCGA	4 cut(s)	114, 425, 1338, 1406
TasI	AATT	9 cut(s)	147, 350, 359, 582, 894, 1036, 1171, 1181, 1272
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	3 cut(s)	18, 21, 367
TfiI	GAWTC	3 cut(s)	434, 950, 1373
Tru1I	TTAA	4 cut(s)	1007, 1074, 1121, 1179
Tru9I	TTAA	4 cut(s)	1007, 1074, 1121, 1179
TscAI	CASTG	1 cut(s)	1258
TseI	GCWGC	7 cut(s)	296, 371, 578, 599, 602, 664, 931
TspDTI	ATGAA	3 cut(s)	210, 237, 372
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	1 cut(s)	1258
XapI	RAATTY	3 cut(s)	147, 1171, 1272
XceI	RCATGY	1 cut(s)	654
XmiI	GTMKAC	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	3 cut(s)	278, 818, 1167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.