Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005785

Physical Location & Seq

Genomic Coordinates Reverse (-)

17647257 .. 17650649

Gene Structure 3393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0201800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAGGATATTGAAGAGGGAGATGATCGAAGATGTTGCTCTGATAGGGGGGTTGGTAGGGGTGCAATTTGTGTATGCTGGGAATTCTGTATTGCTGAGCTATTTTATGTCTTTGGGGCTTGACCCTCTCACCATTGTTATCTACTCCAGCTTTGCCTCCTTCATCATCCTCTCTCCCATTGCTTACTATTTTGAAAGGAGCAAATGGCCAAACAAAATCAGCCTCAAGTTTGTGATTCAGTTGGTTTTGATCGCCTTTGGAGGAGTAACTTTGTTCCAGGTATTATTTTTAAAGGGAATCGTGCTCACTTCACCAGCAATGGCAACAGCCATGCCTAACCTTGCTCCAGGACTTATATTTGTCATTGCTTGTACTGTTAGATTGGAGAAAGTAAAACTTAGTTGCCTATACAGCAAGGTGAAGATTCTAGGCACATTGTTGTGTGTGGTAGGCGCTCTCACAATGAGCATAATGCAAAGCACCATTTCCACCCCAGCAACAGAGATTCAATATCAAGCTCATTCTCCTGATGTGATCTTCGACAAGCAGAAGATTATTGGATGCTTGTATCTCCTTGCTGCCGTGTTTGTTTTGTCCAGCAATATTGTCTTGCAGGCTACAACATTGGGTGATTTTCCTGCACCTATGTCCTTGTGTGCCATAACATCTTTCATAGGGGTGTTTATAACTGCAGCTGTACAGTTGATTCAAGATCACAAAATCGAAACTGGTTGGCCCCTTGTCAGTGCTCGAGACTTGATTGGCTTTTCTTTACTGGGAGGTACAGTGAGTGGAGCTTGCATCAGTTTCAATGGGTGGGCAATGAAGAAGAGAGGGCCAGTTTTGGTGTCAATGTTTAGCCCCATTGGAACTGTCTGCTCAGTTGTTCTCTCAGTTATCACCTTAGGAGAATCTATCAGTGTTGGAAGCCTTGCCGGTATGTGCCTCATGTTTACTGGGCTCTACTTTTTCCTATGGGCAAAAGGAAAGGAAGGATTTCCAGATGGGGATGACTTGGAAAGTGAGTTTGATGCAGTGAAGCCTCTTTTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tcp11

Protein Analysis

351

Amino Acids

37.78

Weight (kDa)

8.05

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	19 - 156	1.4e-07	EamA-like transporter family
EamA	PF00892	186 - 325	9.2e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22930 AT1G22930
fragaria_vesca	FvH4_5g28950 FvH4_5g28950 FvH4_5g28950 FvH4_5g28950
malus_domestica	MD08G1236100.v1.1 MD15G1428100.v1.1
prunus_persica	Prupe.1G572800_v2.0.a1 Prupe.1G572800_v2.0.a1
pyrus_communis	pycom08g20440 pycom08g20450 pycom15g37930
rosa_chinensis	RchiOBHm_Chr7g0221251
rosa_laevigata	RLG00000002166
rosa_multiflora	Rmu_sc0000324.1_g000018 Rmu_sc0003838.1_g000004 Rmu_sc0029316.1_g000001 Rmu_sc0032411.1_g000003
rosa_roxburghii	Rroxscaffold_3G00238480 Rroxscaffold_3G00238510
rosa_rugosa	Rorug07G0201800 Rorug07G0201900
rosa_samantha	Rh7AG340700 Rh7BG332000 Rh7CG358600 Rh7DG339500
rosa_wichuraiana	Rw7G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	686
AcoI	YGGCCR	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	82
AfaI	GTAC	3 cut(s)	373, 699, 784
AgsI	TTSAA	5 cut(s)	13, 194, 509, 710, 811
AjnI	CCWGG	2 cut(s)	276, 346
AluBI	AGCT	5 cut(s)	99, 150, 518, 695, 797
AluI	AGCT	5 cut(s)	99, 150, 518, 695, 797
Alw21I	GWGCWC	2 cut(s)	306, 751
Alw26I	GTCTC	1 cut(s)	747
Ama87I	CYCGRG	1 cut(s)	750
AoxI	GGCC	3 cut(s)	206, 734, 836
ApeKI	GCWGC	2 cut(s)	578, 692
ApoI	RAATTY	1 cut(s)	82
Asp700I	GAANNNNTTC	1 cut(s)	996
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	2 cut(s)	735, 836
AsuHPI	GGTGA	5 cut(s)	121, 303, 430, 641, 892
AvaI	CYCGRG	1 cut(s)	750
AxyI	CCTNAGG	1 cut(s)	904
BalI	TGGCCA	1 cut(s)	208
BanII	GRGCYC	1 cut(s)	963
Bbv12I	GWGCWC	2 cut(s)	306, 751
BbvI	GCAGC	2 cut(s)	565, 704
BccI	CCATC	1 cut(s)	998
BceAI	ACGGC	1 cut(s)	566
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BciT130I	CCWGG	2 cut(s)	278, 348
BcoDI	GTCTC	1 cut(s)	747
BfaI	CTAG	1 cut(s)	428
BfmI	CTRYAG	1 cut(s)	690
BfoI	RGCGCY	1 cut(s)	456
BisI	GCNGC	2 cut(s)	579, 693
BlpI	GCTNAGC	1 cut(s)	95
BlsI	GCNGC	2 cut(s)	580, 694
Bme1390I	CCNGG	2 cut(s)	278, 348
BmeT110I	CYCGRG	1 cut(s)	750
BmgT120I	GGNCC	2 cut(s)	735, 836
BmiI	GGNNCC	1 cut(s)	737
BmrFI	CCNGG	2 cut(s)	278, 348
BmrI	ACTGGG	2 cut(s)	785, 966
BmsI	GCATC	3 cut(s)	551, 810, 1021
BmuI	ACTGGG	2 cut(s)	785, 966
BpmI	CTGGAG	2 cut(s)	130, 330
Bpu1102I	GCTNAGC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	209
BsaXI	ACNNNNNCTCC	2 cut(s)	771, 801
Bse118I	RCCGGY	1 cut(s)	935
Bse1I	ACTGG	4 cut(s)	733, 780, 839, 961
Bse21I	CCTNAGG	1 cut(s)	904
Bse3DI	GCAATG	4 cut(s)	177, 324, 363, 828
BseBI	CCWGG	2 cut(s)	278, 348
BseGI	GGATG	3 cut(s)	165, 566, 1015
BseMI	GCAATG	4 cut(s)	177, 324, 363, 828
BseMII	CTCAG	3 cut(s)	86, 894, 906
BseNI	ACTGG	4 cut(s)	733, 780, 839, 961
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	565, 704
BseYI	CCCAGC	2 cut(s)	77, 493
BsgI	GTGCAG	1 cut(s)	624
BshFI	GGCC	3 cut(s)	208, 736, 838
BsiHKAI	GWGCWC	2 cut(s)	306, 751
BsiHKCI	CYCGRG	1 cut(s)	750
BsiSI	CCGG	1 cut(s)	936
BsmAI	GTCTC	1 cut(s)	747
BsnI	GGCC	3 cut(s)	208, 736, 838
BsoBI	CYCGRG	1 cut(s)	750
Bsp1286I	GDGCHC	3 cut(s)	306, 751, 963
Bsp1407I	TGTACA	1 cut(s)	697
Bsp143I	GATC	4 cut(s)	24, 249, 534, 712
Bsp1720I	GCTNAGC	1 cut(s)	95
BspANI	GGCC	3 cut(s)	208, 736, 838
BspCNI	CTCAG	3 cut(s)	87, 893, 905
BspLI	GGNNCC	1 cut(s)	737
BspMAI	CTGCAG	1 cut(s)	694
BsrDI	GCAATG	4 cut(s)	177, 324, 363, 828
BsrFI	RCCGGY	1 cut(s)	935
BsrGI	TGTACA	1 cut(s)	697
BsrI	ACTGG	4 cut(s)	733, 780, 839, 961
BssAI	RCCGGY	1 cut(s)	935
BssMI	GATC	4 cut(s)	24, 249, 534, 712
Bst2UI	CCWGG	2 cut(s)	278, 348
Bst4CI	ACNGT	4 cut(s)	376, 702, 787, 874
Bst6I	CTCTTC	2 cut(s)	8, 824
BstAUI	TGTACA	1 cut(s)	697
BstC8I	GCNNGC	2 cut(s)	615, 799
BstDEI	CTNAG	5 cut(s)	95, 398, 880, 892, 904
BstF5I	GGATG	3 cut(s)	165, 566, 1015
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	4 cut(s)	27, 252, 537, 715
BstMAI	GTCTC	1 cut(s)	747
BstMBI	GATC	4 cut(s)	24, 249, 534, 712
BstMWI	GCNNNNNNNGC	1 cut(s)	411
BstNI	CCWGG	2 cut(s)	278, 348
BstSCI	CCNGG	2 cut(s)	276, 346
BstSFI	CTRYAG	1 cut(s)	690
BstV1I	GCAGC	2 cut(s)	565, 704
Bsu36I	CCTNAGG	1 cut(s)	904
BsuRI	GGCC	3 cut(s)	208, 736, 838
BtsCI	GGATG	3 cut(s)	165, 566, 1015
BtsI	GCAGTG	1 cut(s)	1041
BtsIMutI	CAGTG	4 cut(s)	751, 792, 925, 1041
Cac8I	GCNNGC	2 cut(s)	615, 799
CfoI	GCGC	1 cut(s)	455
Cfr10I	RCCGGY	1 cut(s)	935
Cfr13I	GGNCC	2 cut(s)	735, 836
Csp6I	GTAC	3 cut(s)	372, 698, 783
CviAII	CATG	2 cut(s)	331, 949
CviQI	GTAC	3 cut(s)	372, 698, 783
DdeI	CTNAG	5 cut(s)	95, 398, 880, 892, 904
DpnI	GATC	4 cut(s)	26, 251, 536, 714
DpnII	GATC	4 cut(s)	24, 249, 534, 712
DraI	TTTAAA	1 cut(s)	291
EaeI	YGGCCR	1 cut(s)	206
Eam1104I	CTCTTC	2 cut(s)	8, 824
EarI	CTCTTC	2 cut(s)	8, 824
Eco24I	GRGCYC	1 cut(s)	963
Eco81I	CCTNAGG	1 cut(s)	904
Eco88I	CYCGRG	1 cut(s)	750
EcoRI	GAATTC	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	276, 346
EcoT38I	GRGCYC	1 cut(s)	963
FaeI	CATG	2 cut(s)	334, 952
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FatI	CATG	2 cut(s)	330, 948
Fnu4HI	GCNGC	2 cut(s)	579, 693
FokI	GGATG	3 cut(s)	152, 573, 1022
FriOI	GRGCYC	1 cut(s)	963
Fsp4HI	GCNGC	2 cut(s)	579, 693
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	2 cut(s)	579, 693
GsaI	CCCAGC	2 cut(s)	81, 497
GsuI	CTGGAG	2 cut(s)	130, 330
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	3 cut(s)	208, 736, 838
HapII	CCGG	1 cut(s)	936
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	2 cut(s)	334, 952
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HinfI	GANTC	6 cut(s)	235, 297, 424, 505, 706, 911
HpaII	CCGG	1 cut(s)	936
HphI	GGTGA	5 cut(s)	121, 303, 430, 641, 892
Hpy166II	GTNNAC	1 cut(s)	954
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	4 cut(s)	527, 710, 752, 1001
Hpy8I	GTNNAC	1 cut(s)	954
HpyAV	CCTTC	2 cut(s)	169, 986
HpyCH4III	ACNGT	4 cut(s)	376, 702, 787, 874
HpyCH4V	TGCA	7 cut(s)	64, 475, 613, 641, 692, 801, 1034
HpyF10VI	GCNNNNNNNGC	1 cut(s)	411
HpyF3I	CTNAG	5 cut(s)	95, 398, 880, 892, 904
Hsp92II	CATG	2 cut(s)	334, 952
HspAI	GCGC	1 cut(s)	453
Kzo9I	GATC	4 cut(s)	24, 249, 534, 712
LmnI	GCTCC	3 cut(s)	198, 349, 794
Lsp1109I	GCAGC	2 cut(s)	565, 704
LweI	GCATC	3 cut(s)	551, 810, 1021
MaeI	CTAG	1 cut(s)	428
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	4 cut(s)	26, 251, 536, 714
MboI	GATC	4 cut(s)	24, 249, 534, 712
MboII	GAAGA	7 cut(s)	25, 41, 433, 529, 562, 838, 841
MhlI	GDGCHC	3 cut(s)	306, 751, 963
MlsI	TGGCCA	1 cut(s)	208
MluCI	AATT	2 cut(s)	65, 82
MluNI	TGGCCA	1 cut(s)	208
MmeI	TCCRAC	1 cut(s)	904
Mox20I	TGGCCA	1 cut(s)	208
MroXI	GAANNNNTTC	1 cut(s)	996
MscI	TGGCCA	1 cut(s)	208
MseI	TTAA	2 cut(s)	290, 1049
MslI	CAYNNNNRTG	2 cut(s)	439, 677
Msp20I	TGGCCA	1 cut(s)	208
MspA1I	CMGCKG	1 cut(s)	695
MspI	CCGG	1 cut(s)	936
MspR9I	CCNGG	2 cut(s)	278, 348
MvaI	CCWGG	2 cut(s)	278, 348
MwoI	GCNNNNNNNGC	1 cut(s)	411
NdeII	GATC	4 cut(s)	24, 249, 534, 712
NlaIII	CATG	2 cut(s)	334, 952
NlaIV	GGNNCC	1 cut(s)	737
PaeR7I	CTCGAG	1 cut(s)	750
PdmI	GAANNNNTTC	1 cut(s)	996
PfeI	GAWTC	6 cut(s)	235, 297, 424, 505, 706, 911
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	580, 694
PsiI	TTATAA	1 cut(s)	686
Psp6I	CCWGG	2 cut(s)	276, 346
PspFI	CCCAGC	2 cut(s)	77, 493
PspGI	CCWGG	2 cut(s)	276, 346
PspN4I	GGNNCC	1 cut(s)	737
PspPI	GGNCC	2 cut(s)	735, 836
PstI	CTGCAG	1 cut(s)	694
PvuII	CAGCTG	1 cut(s)	695
RsaI	GTAC	3 cut(s)	373, 699, 784
RsaNI	GTAC	3 cut(s)	372, 698, 783
RseI	CAYNNNNRTG	2 cut(s)	439, 677
SaqAI	TTAA	2 cut(s)	290, 1049
SatI	GCNGC	2 cut(s)	579, 693
Sau3AI	GATC	4 cut(s)	24, 249, 534, 712
Sau96I	GGNCC	2 cut(s)	735, 836
ScrFI	CCNGG	2 cut(s)	278, 348
SduI	GDGCHC	3 cut(s)	306, 751, 963
SfaNI	GCATC	3 cut(s)	551, 810, 1021
SfcI	CTRYAG	1 cut(s)	690
Sfr274I	CTCGAG	1 cut(s)	750
SlaI	CTCGAG	1 cut(s)	750
SmiMI	CAYNNNNRTG	2 cut(s)	439, 677
SmlI	CTYRAG	2 cut(s)	224, 750
SmoI	CTYRAG	2 cut(s)	224, 750
Sse9I	AATT	2 cut(s)	65, 82
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	2 cut(s)	276, 346
TaaI	ACNGT	4 cut(s)	376, 702, 787, 874
TaqI	TCGA	4 cut(s)	27, 540, 723, 751
TasI	AATT	2 cut(s)	65, 82
TatI	WGTACW	2 cut(s)	371, 697
TfiI	GAWTC	6 cut(s)	235, 297, 424, 505, 706, 911
Tru1I	TTAA	2 cut(s)	290, 1049
Tru9I	TTAA	2 cut(s)	290, 1049
TscAI	CASTG	4 cut(s)	751, 792, 925, 1041
TseI	GCWGC	2 cut(s)	578, 692
TspDTI	ATGAA	3 cut(s)	151, 661, 839
TspRI	CASTG	4 cut(s)	751, 792, 925, 1041
XapI	RAATTY	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	750
XmnI	GAANNNNTTC	1 cut(s)	996
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.