Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0005785

Physical Location & Seq

Genomic Coordinates Forward (+)

20248114 .. 20249733

Gene Structure 1620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGCGCTTGGCTAAATTGGACGAATTGCGGCAAGCAGCTAAAAGTGGGGTAGAAATGCGTGTTGAAAAGGAACGTCAAAAGCTTGGCTCGAAAGTGGAATCACGTTTTCAGCAGGCAGAGGCAAATAGAATGCTCTTGCTCAAAGCTTATAGACAAAGAAGGGCTACTTTGAAGGAAAGAACATCTCAGTCATTATTGCGGAAAATGGCTTGGGAGAAGAAGTACAAGGAGCGTGTACGTGCTGCAATTAGCCAAAAACGGGCAGCTGCTGAAAAAAAGCGATTGGCACTTTTGGAAGCAGAGAAGAATAGGGCATGTGCAAGGATGTTGCAAGTGCAAAGAGTGGCCAAGTCTGTCTCTCATCAACGTGAGATTGAAAGGAGGGTAAAAAGGGAGCAGTTAGAAGACCGGTTGCAAAGGGCAAAGAGGCAAAGAGCAGAGTATCTAAGGCAAAGAGGAAAGCTACAGATATCTTTTCAAGTGAGTTGGAATAGGATGCAATCCGAGGAGGCTCGATCTCCTTTCCAGAAAGTTAGCAAGAGGTGTTGGAGGCGTTTCGTCATGCTAAGGAGAACTACACTTGCTTTGGCAAAAGATTATGATGCCTTGAAAATTAATGAAAAGACTGTCAAGTCGATGCCGTTTGAGCAGCTCGCAATTTTGATTGAATCAACTAATACCCTTCAGACTTTGAAAGCTCTTCTAGACAGGCTTGAGATCCGGTTAAAAGTTTCCAGGACTGTTGCCTCAATAAATTATCCATCCAGCTTTGATAACATAGATCACCTTCTCAAACGAGTTGCTTCCCCAAGAAAGAGGACTACACCAAGGACATCTTTAAGGAGCAGAGATGCAAAGAAAGAATCTTCCATCTGGGACGCGGCTAGAAATTCTGTTAAATTATCAAGGTATCCGATGAGAGTGGTGCTTTGTGCTTACATGATTTTGGGTCATCCAGATGCGGTTTTCAGTGGTAGCGGAGAGCCTGAAATTTCTCTGGCCAAATCTGCAGAAGAGTTTGTTAGACAGTTTGAGTTACTACTAAAGGTTATATTGGACGGCCCTGTATGGAGTTCTGATGAAGAGTCTGATTCCGCATTGCCCAAACATTTGACCTTCAGATCGATCAACTTGGAGCCTTTGATAAAGCATGGTGCTCCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tcp11

Protein Analysis

389

Amino Acids

45.17

Weight (kDa)

10.59

Isoelectric Point (pI)

60.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22930 AT1G22930
fragaria_vesca	FvH4_5g28950 FvH4_5g28950 FvH4_5g28950 FvH4_5g28950
malus_domestica	MD08G1236100.v1.1 MD15G1428100.v1.1
prunus_persica	Prupe.1G572800_v2.0.a1 Prupe.1G572800_v2.0.a1
pyrus_communis	pycom08g20440 pycom08g20450 pycom15g37930
rosa_chinensis	RchiOBHm_Chr7g0221251
rosa_laevigata	RLG00000002166
rosa_multiflora	Rmu_sc0000324.1_g000018 Rmu_sc0003838.1_g000004 Rmu_sc0029316.1_g000001 Rmu_sc0032411.1_g000003
rosa_roxburghii	Rroxscaffold_3G00238480 Rroxscaffold_3G00238510
rosa_rugosa	Rorug07G0201800 Rorug07G0201900
rosa_samantha	Rh7AG340700 Rh7BG332000 Rh7CG358600 Rh7DG339500
rosa_wichuraiana	Rw7G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	631
AccII	CGCG	1 cut(s)	881
AciI	CCGC	6 cut(s)	28, 199, 881, 962, 978, 1095
AclWI	GGATC	1 cut(s)	712
AcoI	YGGCCR	2 cut(s)	345, 999
AcsI	RAATTY	2 cut(s)	889, 990
AcuI	CTGAAG	2 cut(s)	668, 1102
AfaI	GTAC	2 cut(s)	224, 237
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgeI	ACCGGT	1 cut(s)	408
AgsI	TTSAA	7 cut(s)	65, 172, 377, 479, 610, 668, 694
AjnI	CCWGG	1 cut(s)	734
AluBI	AGCT	8 cut(s)	38, 82, 146, 266, 463, 652, 698, 768
AluI	AGCT	8 cut(s)	38, 82, 146, 266, 463, 652, 698, 768
Alw21I	GWGCWC	1 cut(s)	1159
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	712
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	3 cut(s)	345, 999, 1060
ApeKI	GCWGC	5 cut(s)	35, 242, 263, 266, 649
ApoI	RAATTY	2 cut(s)	889, 990
AseI	ATTAAT	1 cut(s)	615
AsiGI	ACCGGT	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	1061
AsuHPI	GGTGA	1 cut(s)	776
BalI	TGGCCA	2 cut(s)	347, 1001
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	1159
BbvI	GCAGC	5 cut(s)	47, 229, 253, 275, 661
BccI	CCATC	2 cut(s)	769, 878
BceAI	ACGGC	2 cut(s)	625, 1075
BciT130I	CCWGG	1 cut(s)	736
BciVI	GTATCC	1 cut(s)	921
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	2 cut(s)	704, 885
BfmI	CTRYAG	2 cut(s)	464, 1008
BfuI	GTATCC	1 cut(s)	921
BisI	GCNGC	7 cut(s)	29, 36, 243, 264, 267, 650, 882
BlsI	GCNGC	7 cut(s)	30, 37, 244, 265, 268, 651, 883
Bme1390I	CCNGG	1 cut(s)	736
BmgT120I	GGNCC	1 cut(s)	1061
BmiI	GGNNCC	1 cut(s)	1137
BmrFI	CCNGG	1 cut(s)	736
BmsI	GCATC	5 cut(s)	486, 592, 627, 841, 949
BpiI	GAAGAC	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	734
Bsa29I	ATCGAT	1 cut(s)	1124
BsaAI	YACGTR	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	504, 827
BsaWI	WCCGGW	2 cut(s)	408, 720
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse118I	RCCGGY	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	1097
BseBI	CCWGG	1 cut(s)	736
BseCI	ATCGAT	1 cut(s)	1124
BseDI	CCNNGG	2 cut(s)	504, 827
BseGI	GGATG	4 cut(s)	330, 501, 761, 952
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	1 cut(s)	1097
BseMII	CTCAG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	521
BseXI	GCAGC	5 cut(s)	47, 229, 253, 275, 661
Bsh1236I	CGCG	1 cut(s)	881
BshFI	GGCC	3 cut(s)	347, 1001, 1062
BshTI	ACCGGT	1 cut(s)	408
BshVI	ATCGAT	1 cut(s)	1124
BsiHKAI	GWGCWC	1 cut(s)	1159
BsiSI	CCGG	2 cut(s)	409, 721
BslFI	GGGAC	1 cut(s)	890
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	890
BsmI	GAATGC	1 cut(s)	135
BsnI	GGCC	3 cut(s)	347, 1001, 1062
Bsp1286I	GDGCHC	1 cut(s)	1159
Bsp143I	GATC	5 cut(s)	515, 717, 781, 1121, 1125
BspACI	CCGC	6 cut(s)	28, 199, 881, 962, 978, 1095
BspANI	GGCC	3 cut(s)	347, 1001, 1062
BspCNI	CTCAG	1 cut(s)	199
BspDI	ATCGAT	1 cut(s)	1124
BspFNI	CGCG	1 cut(s)	881
BspLI	GGNNCC	1 cut(s)	1137
BspMAI	CTGCAG	1 cut(s)	1012
BspPI	GGATC	1 cut(s)	712
BspQI	GCTCTTC	1 cut(s)	705
BsrDI	GCAATG	1 cut(s)	1097
BsrFI	RCCGGY	1 cut(s)	408
BssAI	RCCGGY	1 cut(s)	408
BssECI	CCNNGG	2 cut(s)	504, 827
BssMI	GATC	5 cut(s)	515, 717, 781, 1121, 1125
BssT1I	CCWWGG	1 cut(s)	827
Bst2UI	CCWGG	1 cut(s)	736
Bst4CI	ACNGT	3 cut(s)	628, 742, 1029
Bst6I	CTCTTC	3 cut(s)	705, 1008, 1077
BstBAI	YACGTR	1 cut(s)	239
BstC8I	GCNNGC	3 cut(s)	33, 114, 654
BstDEI	CTNAG	3 cut(s)	186, 446, 566
BstF5I	GGATG	4 cut(s)	330, 501, 761, 952
BstFNI	CGCG	1 cut(s)	881
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	5 cut(s)	518, 720, 784, 1124, 1128
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	5 cut(s)	515, 717, 781, 1121, 1125
BstMWI	GCNNNNNNNGC	2 cut(s)	646, 1007
BstNI	CCWGG	1 cut(s)	736
BstNSI	RCATGY	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	734
BstSFI	CTRYAG	2 cut(s)	464, 1008
BstUI	CGCG	1 cut(s)	881
BstV1I	GCAGC	5 cut(s)	47, 229, 253, 275, 661
BstV2I	GAAGAC	1 cut(s)	411
BstX2I	RGATCY	1 cut(s)	717
BstYI	RGATCY	1 cut(s)	717
Bsu15I	ATCGAT	1 cut(s)	1124
BsuI	GTATCC	1 cut(s)	921
BsuRI	GGCC	3 cut(s)	347, 1001, 1062
BsuTUI	ATCGAT	1 cut(s)	1124
BtsCI	GGATG	4 cut(s)	330, 501, 761, 952
BtsIMutI	CAGTG	1 cut(s)	976
Cac8I	GCNNGC	3 cut(s)	33, 114, 654
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	408
Cfr13I	GGNCC	1 cut(s)	1061
ClaI	ATCGAT	1 cut(s)	1124
CseI	GACGC	1 cut(s)	887
Csp6I	GTAC	2 cut(s)	223, 236
CspAI	ACCGGT	1 cut(s)	408
CviAII	CATG	4 cut(s)	315, 562, 940, 1151
CviQI	GTAC	2 cut(s)	223, 236
DdeI	CTNAG	3 cut(s)	186, 446, 566
DpnI	GATC	5 cut(s)	517, 719, 783, 1123, 1127
DpnII	GATC	5 cut(s)	515, 717, 781, 1121, 1125
DrdI	GACNNNNNNGTC	1 cut(s)	631
DseDI	GACNNNNNNGTC	1 cut(s)	631
EaeI	YGGCCR	2 cut(s)	345, 999
Eam1104I	CTCTTC	3 cut(s)	705, 1008, 1077
EarI	CTCTTC	3 cut(s)	705, 1008, 1077
Eco130I	CCWWGG	1 cut(s)	827
Eco32I	GATATC	1 cut(s)	471
Eco57I	CTGAAG	2 cut(s)	668, 1102
EcoRII	CCWGG	1 cut(s)	734
EcoRV	GATATC	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	827
ErhI	CCWWGG	1 cut(s)	827
FaeI	CATG	4 cut(s)	318, 565, 943, 1154
FaiI	YATR	9 cut(s)	150, 316, 563, 600, 779, 941, 1052, 1069, 1152
FalI	AAGNNNNNCTT	4 cut(s)	151, 183, 820, 852
FaqI	GGGAC	1 cut(s)	890
FatI	CATG	4 cut(s)	314, 561, 939, 1150
Fnu4HI	GCNGC	7 cut(s)	29, 36, 243, 264, 267, 650, 882
FokI	GGATG	4 cut(s)	337, 508, 748, 939
Fsp4HI	GCNGC	7 cut(s)	29, 36, 243, 264, 267, 650, 882
FspBI	CTAG	2 cut(s)	704, 885
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	7 cut(s)	29, 36, 243, 264, 267, 650, 882
HaeIII	GGCC	3 cut(s)	347, 1001, 1062
HapII	CCGG	2 cut(s)	409, 721
HgaI	GACGC	1 cut(s)	887
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	4 cut(s)	318, 565, 943, 1154
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	2 cut(s)	80, 144
HinfI	GANTC	5 cut(s)	98, 668, 863, 1085, 1091
HpaII	CCGG	2 cut(s)	409, 721
HphI	GGTGA	1 cut(s)	776
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	6 cut(s)	505, 687, 915, 1078, 1090, 1121
Hpy188III	TCNNGA	3 cut(s)	526, 704, 956
Hpy8I	GTNNAC	1 cut(s)	236
HpyAV	CCTTC	5 cut(s)	153, 166, 692, 797, 1126
HpyCH4III	ACNGT	3 cut(s)	628, 742, 1029
HpyCH4IV	ACGT	4 cut(s)	73, 103, 238, 367
HpyCH4V	TGCA	8 cut(s)	245, 320, 331, 337, 415, 499, 854, 1010
HpyF10VI	GCNNNNNNNGC	2 cut(s)	646, 1007
HpyF3I	CTNAG	3 cut(s)	186, 446, 566
HpySE526I	ACGT	4 cut(s)	73, 103, 238, 367
Hsp92II	CATG	4 cut(s)	318, 565, 943, 1154
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	5 cut(s)	515, 717, 781, 1121, 1125
LguI	GCTCTTC	1 cut(s)	705
LmnI	GCTCC	5 cut(s)	229, 394, 843, 1135, 1162
Lsp1109I	GCAGC	5 cut(s)	47, 229, 253, 275, 661
LweI	GCATC	5 cut(s)	486, 592, 627, 841, 949
MaeI	CTAG	2 cut(s)	704, 885
MaeII	ACGT	4 cut(s)	73, 103, 238, 367
MaeIII	GTNAC	1 cut(s)	1035
MalI	GATC	5 cut(s)	517, 719, 783, 1123, 1127
MboI	GATC	5 cut(s)	515, 717, 781, 1121, 1125
MboII	GAAGA	7 cut(s)	229, 316, 416, 692, 858, 1025, 1094
MflI	RGATCY	1 cut(s)	717
MhlI	GDGCHC	1 cut(s)	1159
MlsI	TGGCCA	2 cut(s)	347, 1001
MluCI	AATT	9 cut(s)	14, 23, 246, 612, 657, 754, 889, 899, 990
MluNI	TGGCCA	2 cut(s)	347, 1001
MlyI	GAGTC	1 cut(s)	1094
MmeI	TCCRAC	2 cut(s)	467, 527
Mox20I	TGGCCA	2 cut(s)	347, 1001
MscI	TGGCCA	2 cut(s)	347, 1001
MseI	TTAA	4 cut(s)	615, 725, 839, 897
MslI	CAYNNNNRTG	2 cut(s)	366, 957
Msp20I	TGGCCA	2 cut(s)	347, 1001
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	2 cut(s)	409, 721
MspR9I	CCNGG	1 cut(s)	736
Mva1269I	GAATGC	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	736
MvnI	CGCG	1 cut(s)	881
MwoI	GCNNNNNNNGC	2 cut(s)	646, 1007
NdeII	GATC	5 cut(s)	515, 717, 781, 1121, 1125
NlaIII	CATG	4 cut(s)	318, 565, 943, 1154
NlaIV	GGNNCC	1 cut(s)	1137
NspI	RCATGY	1 cut(s)	318
PciSI	GCTCTTC	1 cut(s)	705
PctI	GAATGC	1 cut(s)	135
PfeI	GAWTC	4 cut(s)	98, 668, 863, 1091
PfoI	TCCNGGA	1 cut(s)	734
PinAI	ACCGGT	1 cut(s)	408
PkrI	GCNGC	7 cut(s)	30, 37, 244, 265, 268, 651, 883
PleI	GAGTC	1 cut(s)	1093
PpsI	GAGTC	1 cut(s)	1093
Ppu21I	YACGTR	1 cut(s)	239
PshBI	ATTAAT	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	734
PspGI	CCWGG	1 cut(s)	734
PspN4I	GGNNCC	1 cut(s)	1137
PspPI	GGNCC	1 cut(s)	1061
PstI	CTGCAG	1 cut(s)	1012
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	717
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	224, 237
RsaNI	GTAC	2 cut(s)	223, 236
RseI	CAYNNNNRTG	2 cut(s)	366, 957
SapI	GCTCTTC	1 cut(s)	705
SaqAI	TTAA	4 cut(s)	615, 725, 839, 897
SatI	GCNGC	7 cut(s)	29, 36, 243, 264, 267, 650, 882
Sau3AI	GATC	5 cut(s)	515, 717, 781, 1121, 1125
Sau96I	GGNCC	1 cut(s)	1061
SchI	GAGTC	1 cut(s)	1094
ScrFI	CCNGG	1 cut(s)	736
SduI	GDGCHC	1 cut(s)	1159
SfaNI	GCATC	5 cut(s)	486, 592, 627, 841, 949
SfcI	CTRYAG	2 cut(s)	464, 1008
SmiMI	CAYNNNNRTG	2 cut(s)	366, 957
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	9 cut(s)	14, 23, 246, 612, 657, 754, 889, 899, 990
SsiI	CCGC	6 cut(s)	28, 199, 881, 962, 978, 1095
SspMI	CTAG	2 cut(s)	704, 885
StyD4I	CCNGG	1 cut(s)	734
StyI	CCWWGG	1 cut(s)	827
TaaI	ACNGT	3 cut(s)	628, 742, 1029
TaiI	ACGT	4 cut(s)	76, 106, 241, 370
TaqI	TCGA	4 cut(s)	89, 514, 635, 1124
TasI	AATT	9 cut(s)	14, 23, 246, 612, 657, 754, 889, 899, 990
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	2 cut(s)	31, 884
TfiI	GAWTC	4 cut(s)	98, 668, 863, 1091
Tru1I	TTAA	4 cut(s)	615, 725, 839, 897
Tru9I	TTAA	4 cut(s)	615, 725, 839, 897
TscAI	CASTG	1 cut(s)	976
TseI	GCWGC	5 cut(s)	35, 242, 263, 266, 649
TspDTI	ATGAA	2 cut(s)	633, 1095
TspRI	CASTG	1 cut(s)	976
VspI	ATTAAT	1 cut(s)	615
XapI	RAATTY	2 cut(s)	889, 990
XbaI	TCTAGA	1 cut(s)	703
XceI	RCATGY	1 cut(s)	318
XspI	CTAG	2 cut(s)	704, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.