Rroxscaffold_3G00238510
TCP Family

T-complex protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005785
Physical Location & Seq
Forward (+)
26728422 .. 26730000
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00238510.1

Sequence Viewer

Length: 1035 bp
ATGGCATGCATAATGGAATCTGTAAACCAGGAAGAGCCCAACTATGACCGGATCATTCAACTGTTGCAGGAGGTGAGGGATGAAATTTGCACCATGGCTCCACAGAGCTGGAAACAAGAAATTGTTGAAGCAATTGATGCGGATATTCTCTCTCAGGTGCTAAAATCTGGTAACCTGGATATTGATTACCTGGGAAAGATCCTAGAGTTTTCAATGGTCACTTTGCGAAAGCTCTCCGCTCCTGCGAATGATGATGAAATGATGGCCAGTCTCCAGAGTTTAAGGAAAGAACTAGATGAGATATGTAATGCTAGGGACCAGTCCAACTGCTCAGGTGTCATTGCTATGATCAAGGGTCTGCGTTTTGTTCTAGAGCAGATTCAGTACCTTAGAAATGCCTTTGCCGATCGCTATGGACCTGCATCAGATGCCAATACCTCTCTACGAGTGACGGTCCAGTGGCTTTCATCCGTGTGGAATTGCAAAGATCAGGAGCGGCAAGAACATAAGATTGCTTCCTCGACTTTGATGAGCAGTGATAATTTGTCTCATGAGTTTCTTCCTTCCACCACCCTTAGAAGTGGTGGAAGCTTTCTGTTGAAATCAAATTCTTCATCGCTGTCTTCTAGAAATAGCCAAGGAGAAGGAGTTGATTTGTTGGTGAGGCTCGGCTTGTTGAAGTTGGTGAGTGGTGTTTCTGGTCTGACTGAAGAGGCCCTGCCTGAAACTTTTATGCTTAACCTTTCTAGATTAAGGGCTGTGCGGGCTCAAATTCAGAAAATTATTGTTTCTTCCATAAGCATTCTTATTTGCCGGCAAACCATATTAAGCGAGGGGGTGATAACAACGCCCACAGACATGGAGGGCATCCTGTCAAGATGCATTGAGCGGCTTTTGGGGATATTGGACAGTGTTGAAGATGCAGGTATGGAAGAAATTGTTGAATCAATCAGTGATTTCTCCATCAATGGAAATGAAGTTGTGGACACTGAGAAAGTTCGGTCAAGAAAGATGGTTATCGTACAGAATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tcp11

Protein Analysis

344

Amino Acids

38.26

Weight (kDa)

4.83

Isoelectric Point (pI)

53.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tcp11 PF05794 3 - 320 4.6e-43 T-complex protein 11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 427, 914
AccBSI CCGCTC 3 cut(s) 239, 496, 889
AciI CCGC 5 cut(s) 140, 237, 496, 763, 889
AclWI GGATC 2 cut(s) 59, 193
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 3 cut(s) 84, 607, 771
AcuI CTGAAG 1 cut(s) 729
AfaI GTAC 2 cut(s) 386, 1023
AgsI TTSAA 7 cut(s) 59, 128, 213, 601, 679, 917, 944
AjnI CCWGG 3 cut(s) 27, 174, 189
AluBI AGCT 3 cut(s) 108, 232, 591
AluI AGCT 3 cut(s) 108, 232, 591
Alw26I GTCTC 2 cut(s) 275, 552
AlwI GGATC 2 cut(s) 59, 193
AoxI GGCC 2 cut(s) 264, 714
ApoI RAATTY 3 cut(s) 84, 607, 771
AspS9I GGNCC 4 cut(s) 316, 416, 454, 715
AsuHPI GGTGA 4 cut(s) 85, 673, 697, 850
AvaII GGWCC 3 cut(s) 316, 416, 454
BalI TGGCCA 1 cut(s) 266
BanII GRGCYC 2 cut(s) 39, 769
BbsI GAAGAC 1 cut(s) 615
BccI CCATC 3 cut(s) 256, 971, 1006
BciT130I CCWGG 3 cut(s) 29, 176, 191
BclI TGATCA 1 cut(s) 348
BcoDI GTCTC 2 cut(s) 275, 552
BfaI CTAG 6 cut(s) 203, 293, 312, 371, 627, 747
BfuAI ACCTGC 2 cut(s) 427, 914
BisI GCNGC 2 cut(s) 497, 890
BlsI GCNGC 2 cut(s) 498, 891
Bme1390I CCNGG 3 cut(s) 29, 176, 191
Bme18I GGWCC 3 cut(s) 316, 416, 454
BmgT120I GGNCC 4 cut(s) 316, 416, 454, 715
BmiI GGNNCC 2 cut(s) 99, 317
BmrFI CCNGG 3 cut(s) 29, 176, 191
BmsI GCATC 6 cut(s) 127, 418, 431, 869, 876, 910
BpiI GAAGAC 1 cut(s) 615
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 331
BsaBI GATNNNNATC 1 cut(s) 1016
BsaJI CCNNGG 3 cut(s) 93, 190, 637
BsaWI WCCGGW 1 cut(s) 48
BsaXI ACNNNNNCTCC 4 cut(s) 82, 112, 633, 663
Bse118I RCCGGY 1 cut(s) 813
Bse1I ACTGG 3 cut(s) 267, 319, 457
Bse3DI GCAATG 1 cut(s) 339
Bse8I GATNNNNATC 1 cut(s) 1016
BseBI CCWGG 3 cut(s) 29, 176, 191
BseDI CCNNGG 3 cut(s) 93, 190, 637
BseGI GGATG 3 cut(s) 85, 467, 867
BseJI GATNNNNATC 1 cut(s) 1016
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 3 cut(s) 167, 345, 981
BseNI ACTGG 3 cut(s) 267, 319, 457
Bsh1285I CGRYCG 1 cut(s) 409
BshFI GGCC 2 cut(s) 266, 716
BsiEI CGRYCG 1 cut(s) 409
BsiSI CCGG 2 cut(s) 49, 814
BslFI GGGAC 1 cut(s) 329
BsmAI GTCTC 2 cut(s) 275, 552
BsmFI GGGAC 1 cut(s) 329
BsmI GAATGC 1 cut(s) 801
BsnI GGCC 2 cut(s) 266, 716
Bsp1286I GDGCHC 2 cut(s) 39, 769
Bsp143I GATC 5 cut(s) 51, 198, 348, 406, 487
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 5 cut(s) 140, 237, 496, 763, 889
BspANI GGCC 2 cut(s) 266, 716
BspCNI CTCAG 3 cut(s) 166, 344, 982
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 2 cut(s) 99, 317
BspMI ACCTGC 2 cut(s) 427, 914
BspPI GGATC 2 cut(s) 59, 193
BspQI GCTCTTC 1 cut(s) 27
BsrBI CCGCTC 3 cut(s) 239, 496, 889
BsrDI GCAATG 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 813
BsrI ACTGG 3 cut(s) 267, 319, 457
BssAI RCCGGY 1 cut(s) 813
BssECI CCNNGG 3 cut(s) 93, 190, 637
BssMI GATC 5 cut(s) 51, 198, 348, 406, 487
BssT1I CCWWGG 2 cut(s) 93, 637
Bst2UI CCWGG 3 cut(s) 29, 176, 191
Bst4CI ACNGT 3 cut(s) 63, 454, 911
Bst6I CTCTTC 2 cut(s) 27, 705
BstAPI GCANNNNNTGC 2 cut(s) 137, 428
BstC8I GCNNGC 3 cut(s) 7, 765, 815
BstDEI CTNAG 5 cut(s) 153, 331, 389, 575, 990
BstDSI CCRYGG 1 cut(s) 93
BstEII GGTNACC 1 cut(s) 170
BstF5I GGATG 3 cut(s) 85, 467, 867
BstKTI GATC 5 cut(s) 54, 201, 351, 409, 490
BstMAI GTCTC 2 cut(s) 275, 552
BstMBI GATC 5 cut(s) 51, 198, 348, 406, 487
BstMCI CGRYCG 1 cut(s) 409
BstMWI GCNNNNNNNGC 3 cut(s) 137, 428, 764
BstNI CCWGG 3 cut(s) 29, 176, 191
BstNSI RCATGY 1 cut(s) 9
BstPI GGTNACC 1 cut(s) 170
BstSCI CCNGG 3 cut(s) 27, 174, 189
BstV2I GAAGAC 1 cut(s) 615
BstX2I RGATCY 1 cut(s) 198
BstXI CCANNNNNNTGG 2 cut(s) 108, 859
BstYI RGATCY 1 cut(s) 198
BsuRI GGCC 2 cut(s) 266, 716
BtgI CCRYGG 1 cut(s) 93
BtgZI GCGATG 1 cut(s) 600
BtsCI GGATG 3 cut(s) 85, 467, 867
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 5 cut(s) 464, 541, 916, 958, 987
BveI ACCTGC 2 cut(s) 427, 914
Cac8I GCNNGC 3 cut(s) 7, 765, 815
CciI TCATGA 1 cut(s) 550
Cfr10I RCCGGY 1 cut(s) 813
Cfr13I GGNCC 4 cut(s) 316, 416, 454, 715
Csp6I GTAC 2 cut(s) 385, 1022
CviAII CATG 4 cut(s) 6, 94, 551, 859
CviQI GTAC 2 cut(s) 385, 1022
DdeI CTNAG 5 cut(s) 153, 331, 389, 575, 990
DpnI GATC 5 cut(s) 53, 200, 350, 408, 489
DpnII GATC 5 cut(s) 51, 198, 348, 406, 487
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 27, 705
EarI CTCTTC 2 cut(s) 27, 705
Eco130I CCWWGG 2 cut(s) 93, 637
Eco24I GRGCYC 2 cut(s) 39, 769
Eco47I GGWCC 3 cut(s) 316, 416, 454
Eco57I CTGAAG 1 cut(s) 729
Eco91I GGTNACC 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 715
EcoO65I GGTNACC 1 cut(s) 170
EcoRII CCWGG 3 cut(s) 27, 174, 189
EcoT14I CCWWGG 2 cut(s) 93, 637
EcoT22I ATGCAT 2 cut(s) 11, 884
EcoT38I GRGCYC 2 cut(s) 39, 769
ErhI CCWWGG 2 cut(s) 93, 637
FaeI CATG 4 cut(s) 9, 97, 554, 862
FaqI GGGAC 1 cut(s) 329
FatI CATG 4 cut(s) 5, 93, 550, 858
FauI CCCGC 1 cut(s) 756
FbaI TGATCA 1 cut(s) 348
Fnu4HI GCNGC 2 cut(s) 497, 890
FokI GGATG 3 cut(s) 92, 454, 854
FriOI GRGCYC 2 cut(s) 39, 769
Fsp4HI GCNGC 2 cut(s) 497, 890
FspBI CTAG 6 cut(s) 203, 293, 312, 371, 627, 747
GluI GCNGC 2 cut(s) 497, 890
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 2 cut(s) 266, 716
HapII CCGG 2 cut(s) 49, 814
Hin1II CATG 4 cut(s) 9, 97, 554, 862
HindIII AAGCTT 1 cut(s) 589
HinfI GANTC 3 cut(s) 17, 379, 944
HpaII CCGG 2 cut(s) 49, 814
HphI GGTGA 4 cut(s) 85, 673, 697, 850
Hpy166II GTNNAC 2 cut(s) 25, 985
Hpy188I TCNGA 3 cut(s) 427, 705, 777
Hpy188III TCNNGA 8 cut(s) 274, 371, 491, 551, 627, 747, 876, 1005
Hpy8I GTNNAC 2 cut(s) 25, 985
HpyAV CCTTC 2 cut(s) 573, 638
HpyCH4III ACNGT 3 cut(s) 63, 454, 911
HpyCH4V TGCA 7 cut(s) 9, 67, 90, 422, 483, 882, 923
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 428, 764
HpyF3I CTNAG 5 cut(s) 153, 331, 389, 575, 990
Hsp92II CATG 4 cut(s) 9, 97, 554, 862
KroI GCCGGC 1 cut(s) 813
KroNI GCCGGC 1 cut(s) 815
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 5 cut(s) 51, 198, 348, 406, 487
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 3 cut(s) 103, 244, 493
LweI GCATC 6 cut(s) 127, 418, 431, 869, 876, 910
MaeI CTAG 6 cut(s) 203, 293, 312, 371, 627, 747
MaeIII GTNAC 3 cut(s) 170, 217, 448
MalI GATC 5 cut(s) 53, 200, 350, 408, 489
MbiI CCGCTC 3 cut(s) 239, 496, 889
MboI GATC 5 cut(s) 51, 198, 348, 406, 487
MboII GAAGA 8 cut(s) 44, 551, 603, 615, 722, 783, 929, 944
MfeI CAATTG 1 cut(s) 132
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 2 cut(s) 39, 769
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 9 cut(s) 84, 120, 132, 478, 541, 607, 771, 780, 936
MluNI TGGCCA 1 cut(s) 266
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 8 cut(s) 64, 69, 448, 529, 657, 706, 826, 856
Mox20I TGGCCA 1 cut(s) 266
Mph1103I ATGCAT 2 cut(s) 11, 884
MroNI GCCGGC 1 cut(s) 813
MscI TGGCCA 1 cut(s) 266
MseI TTAA 4 cut(s) 281, 738, 752, 827
MslI CAYNNNNRTG 3 cut(s) 344, 472, 857
Msp20I TGGCCA 1 cut(s) 266
MspI CCGG 2 cut(s) 49, 814
MspR9I CCNGG 3 cut(s) 29, 176, 191
MunI CAATTG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 801
MvaI CCWGG 3 cut(s) 29, 176, 191
MwoI GCNNNNNNNGC 3 cut(s) 137, 428, 764
NaeI GCCGGC 1 cut(s) 815
NcoI CCATGG 1 cut(s) 93
NdeII GATC 5 cut(s) 51, 198, 348, 406, 487
NgoMIV GCCGGC 1 cut(s) 813
NlaIII CATG 4 cut(s) 9, 97, 554, 862
NlaIV GGNNCC 2 cut(s) 99, 317
NmeAIII GCCGAG 1 cut(s) 648
NmuCI GTSAC 2 cut(s) 217, 448
NsiI ATGCAT 2 cut(s) 11, 884
NspI RCATGY 1 cut(s) 9
PaeI GCATGC 1 cut(s) 9
PagI TCATGA 1 cut(s) 550
PciSI GCTCTTC 1 cut(s) 27
PctI GAATGC 1 cut(s) 801
PdiI GCCGGC 1 cut(s) 815
PfeI GAWTC 3 cut(s) 17, 379, 944
PkrI GCNGC 2 cut(s) 498, 891
Ple19I CGATCG 1 cut(s) 409
Psp6I CCWGG 3 cut(s) 27, 174, 189
PspEI GGTNACC 1 cut(s) 170
PspGI CCWGG 3 cut(s) 27, 174, 189
PspN4I GGNNCC 2 cut(s) 99, 317
PspPI GGNCC 4 cut(s) 316, 416, 454, 715
PsuI RGATCY 1 cut(s) 198
PvuI CGATCG 1 cut(s) 409
RsaI GTAC 2 cut(s) 386, 1023
RsaNI GTAC 2 cut(s) 385, 1022
RseI CAYNNNNRTG 3 cut(s) 344, 472, 857
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 4 cut(s) 281, 738, 752, 827
SatI GCNGC 2 cut(s) 497, 890
Sau3AI GATC 5 cut(s) 51, 198, 348, 406, 487
Sau96I GGNCC 4 cut(s) 316, 416, 454, 715
ScrFI CCNGG 3 cut(s) 29, 176, 191
SduI GDGCHC 2 cut(s) 39, 769
SfaNI GCATC 6 cut(s) 127, 418, 431, 869, 876, 910
SinI GGWCC 3 cut(s) 316, 416, 454
SmiMI CAYNNNNRTG 3 cut(s) 344, 472, 857
SphI GCATGC 1 cut(s) 9
Sse9I AATT 9 cut(s) 84, 120, 132, 478, 541, 607, 771, 780, 936
SsiI CCGC 5 cut(s) 140, 237, 496, 763, 889
SspMI CTAG 6 cut(s) 203, 293, 312, 371, 627, 747
StyD4I CCNGG 3 cut(s) 27, 174, 189
StyI CCWWGG 2 cut(s) 93, 637
TaaI ACNGT 3 cut(s) 63, 454, 911
TaqI TCGA 1 cut(s) 521
TaqII GACCGA 1 cut(s) 990
TasI AATT 9 cut(s) 84, 120, 132, 478, 541, 607, 771, 780, 936
TauI GCSGC 2 cut(s) 499, 892
TfiI GAWTC 3 cut(s) 17, 379, 944
Tru1I TTAA 4 cut(s) 281, 738, 752, 827
Tru9I TTAA 4 cut(s) 281, 738, 752, 827
TscAI CASTG 5 cut(s) 464, 541, 916, 958, 994
TseFI GTSAC 2 cut(s) 217, 448
Tsp45I GTSAC 2 cut(s) 217, 448
TspDTI ATGAA 5 cut(s) 96, 270, 456, 603, 990
TspGWI ACGGA 1 cut(s) 460
TspRI CASTG 5 cut(s) 464, 541, 916, 958, 994
VpaK11BI GGWCC 3 cut(s) 316, 416, 454
XapI RAATTY 3 cut(s) 84, 607, 771
XbaI TCTAGA 3 cut(s) 370, 626, 746
XceI RCATGY 1 cut(s) 9
XspI CTAG 6 cut(s) 203, 293, 312, 371, 627, 747
Zsp2I ATGCAT 2 cut(s) 11, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.