Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029316.1

Orthogroup ID

OG0005785

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1878

Gene Structure 1877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029316.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1316 bp

gttgcaaaccactcagtttgtttctccaagccctccaagttcatcagctggtccttctgtttctagcttagataagaagagtaatccaagtcgtgtagttcgttccctatttcaggaagatgaatctattcgcccgaaaggattagagtcaactgagattggatcgattgtgaatgagttctctaagaccaatttgagtgggcagctcggatcttcttcccaaaagccggtcactgagaatgaactgattgtgaatgagtttctccatgagcaaaaccaggcttttgctaatattttcaatgctgccgatgaagatcaaaataatgtccagtcaaagatcagaaacactatggagaaggctttctgggatggcataatggaatctgtaaaccaggaagagcccaactatgaccggatcattcaactgttggaggaggtgagggatgaaatttgcaccatggctccacagagctggaaacaagaaattgttgaagcaattgatgtggatattctctctcaggtgctaaaatctggtaacctggatattgattacctgggaaagatcctagagttttcaatggtcactttgcgaaagctctctgctcctgcgaatgatgatgaaatgatggccactctccagagtttaaggaaagaactagatgagatatgtaatgctagggaccagtccaactgctcaggtgtcattgctatgatcaagggtctgcgttttgttctagagcagattcaggtgcttaaacgtgagattagcaaagcacgtataagaataatggagcctttgttgaaggggcccactggtttgcagtaccttacaaatgcctttgccaatcgctatggacctgcctcagatgccaatacctctctaccagtgacggtgcagtggctttcatccgtgtggaattgcaaagatcaggagtggcaagaacataagattgcttcctcgactttgatgagcagtgataatttgtctcatgagtttcttccttccaccacccttagaagtggtggaagctttctgttgaaatcaaattcttcatcgctgtcttctagaaatagccaaggtaatgtacaaccggaatgcaagggagaaggagttgatttgttggtgaggctcggcttgttgaagttggtgagtggtgtttctggtctgactgaagaggccctgcctgaaacttttatgcttaacctttcaagattaagggctgtgcaggctcaaattcagaaaattattgtttcttccataagcattcttatttgccggcaaaccatattaagcgagggggtgataacaatgccca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tcp11

Protein Analysis

438

Amino Acids

48.49

Weight (kDa)

5.02

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22930 AT1G22930
fragaria_vesca	FvH4_5g28950 FvH4_5g28950 FvH4_5g28950 FvH4_5g28950
malus_domestica	MD08G1236100.v1.1 MD15G1428100.v1.1
prunus_persica	Prupe.1G572800_v2.0.a1 Prupe.1G572800_v2.0.a1
pyrus_communis	pycom08g20440 pycom08g20450 pycom15g37930
rosa_chinensis	RchiOBHm_Chr7g0221251
rosa_laevigata	RLG00000002166
rosa_multiflora	Rmu_sc0000324.1_g000018 Rmu_sc0003838.1_g000004 Rmu_sc0029316.1_g000001 Rmu_sc0032411.1_g000003
rosa_roxburghii	Rroxscaffold_3G00238480 Rroxscaffold_3G00238510
rosa_rugosa	Rorug07G0201800 Rorug07G0201900
rosa_samantha	Rh7AG340700 Rh7BG332000 Rh7CG358600 Rh7DG339500
rosa_wichuraiana	Rw7G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	866
AclWI	GGATC	4 cut(s)	170, 218, 423, 557
AcoI	YGGCCR	1 cut(s)	628
AcsI	RAATTY	3 cut(s)	448, 1046, 1234
AcuI	CTGAAG	1 cut(s)	1192
AfaI	GTAC	2 cut(s)	825, 1087
AfiI	CCNNNNNNNGG	2 cut(s)	113, 227
AgsI	TTSAA	8 cut(s)	299, 423, 492, 577, 803, 1040, 1142, 1210
AjnI	CCWGG	4 cut(s)	277, 391, 538, 553
AluBI	AGCT	6 cut(s)	48, 67, 206, 472, 596, 1030
AluI	AGCT	6 cut(s)	48, 67, 206, 472, 596, 1030
Alw26I	GTCTC	1 cut(s)	991
AlwI	GGATC	4 cut(s)	170, 218, 423, 557
AoxI	GGCC	3 cut(s)	628, 807, 1177
ApaI	GGGCCC	1 cut(s)	811
ApeKI	GCWGC	2 cut(s)	203, 303
ApoI	RAATTY	3 cut(s)	448, 1046, 1234
Asp700I	GAANNNNTTC	3 cut(s)	127, 177, 360
AspS9I	GGNCC	6 cut(s)	51, 680, 807, 808, 855, 1178
AsuHPI	GGTGA	4 cut(s)	449, 1136, 1160, 1313
AvaII	GGWCC	3 cut(s)	51, 680, 855
BaeGI	GKGCMC	1 cut(s)	811
BalI	TGGCCA	1 cut(s)	630
BanII	GRGCYC	2 cut(s)	403, 811
BbsI	GAAGAC	1 cut(s)	1054
BbvI	GCAGC	2 cut(s)	215, 290
BccI	CCATC	2 cut(s)	363, 620
BciT130I	CCWGG	4 cut(s)	279, 393, 540, 555
BclI	TGATCA	1 cut(s)	712
BcoDI	GTCTC	1 cut(s)	991
BfaI	CTAG	6 cut(s)	64, 567, 657, 676, 735, 1066
BfuAI	ACCTGC	1 cut(s)	866
BisI	GCNGC	2 cut(s)	204, 304
BlsI	GCNGC	2 cut(s)	205, 305
Bme1390I	CCNGG	4 cut(s)	279, 393, 540, 555
Bme18I	GGWCC	3 cut(s)	51, 680, 855
BmgT120I	GGNCC	6 cut(s)	51, 680, 807, 808, 855, 1178
BmiI	GGNNCC	5 cut(s)	463, 681, 793, 808, 809
BmrFI	CCNGG	4 cut(s)	279, 393, 540, 555
BmsI	GCATC	1 cut(s)	857
BpiI	GAAGAC	1 cut(s)	1054
BpmI	CTGGAG	1 cut(s)	621
Bpu10I	CCTNAGC	1 cut(s)	695
Bsa29I	ATCGAT	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	777
BsaBI	GATNNNNATC	1 cut(s)	313
BsaJI	CCNNGG	3 cut(s)	457, 554, 1076
BsaWI	WCCGGW	2 cut(s)	412, 1091
BsaXI	ACNNNNNCTCC	6 cut(s)	446, 476, 783, 813, 1096, 1126
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 227
Bse118I	RCCGGY	2 cut(s)	227, 1276
Bse1I	ACTGG	4 cut(s)	329, 683, 818, 885
Bse3DI	GCAATG	1 cut(s)	703
Bse8I	GATNNNNATC	1 cut(s)	313
BseBI	CCWGG	4 cut(s)	279, 393, 540, 555
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	3 cut(s)	457, 554, 1076
BseGI	GGATG	3 cut(s)	374, 449, 906
BseJI	GATNNNNATC	1 cut(s)	313
BseLI	CCNNNNNNNGG	2 cut(s)	113, 227
BseMI	GCAATG	1 cut(s)	703
BseMII	CTCAG	6 cut(s)	27, 145, 226, 531, 709, 877
BseNI	ACTGG	4 cut(s)	329, 683, 818, 885
BseRI	GAGGAG	1 cut(s)	447
BseSI	GKGCMC	1 cut(s)	811
BseXI	GCAGC	2 cut(s)	215, 290
BsgI	GTGCAG	2 cut(s)	915, 1245
BshFI	GGCC	3 cut(s)	630, 809, 1179
BshVI	ATCGAT	1 cut(s)	165
BsiSI	CCGG	4 cut(s)	228, 413, 1092, 1277
BslFI	GGGAC	1 cut(s)	693
BslI	CCNNNNNNNGG	2 cut(s)	113, 227
BsmAI	GTCTC	1 cut(s)	991
BsmFI	GGGAC	1 cut(s)	693
BsmI	GAATGC	2 cut(s)	1101, 1264
BsnI	GGCC	3 cut(s)	630, 809, 1179
Bsp120I	GGGCCC	1 cut(s)	807
Bsp1286I	GDGCHC	2 cut(s)	403, 811
Bsp1407I	TGTACA	1 cut(s)	1085
Bsp143I	GATC	8 cut(s)	162, 210, 314, 337, 415, 562, 712, 926
Bsp19I	CCATGG	1 cut(s)	457
BspANI	GGCC	3 cut(s)	630, 809, 1179
BspCNI	CTCAG	6 cut(s)	26, 146, 227, 530, 708, 876
BspDI	ATCGAT	1 cut(s)	165
BspHI	TCATGA	1 cut(s)	989
BspLI	GGNNCC	5 cut(s)	463, 681, 793, 808, 809
BspMI	ACCTGC	1 cut(s)	866
BspPI	GGATC	4 cut(s)	170, 218, 423, 557
BspQI	GCTCTTC	1 cut(s)	391
BsrDI	GCAATG	1 cut(s)	703
BsrFI	RCCGGY	2 cut(s)	227, 1276
BsrGI	TGTACA	1 cut(s)	1085
BsrI	ACTGG	4 cut(s)	329, 683, 818, 885
BssAI	RCCGGY	2 cut(s)	227, 1276
BssECI	CCNNGG	3 cut(s)	457, 554, 1076
BssMI	GATC	8 cut(s)	162, 210, 314, 337, 415, 562, 712, 926
BssT1I	CCWWGG	2 cut(s)	457, 1076
Bst2UI	CCWGG	4 cut(s)	279, 393, 540, 555
Bst4CI	ACNGT	2 cut(s)	427, 893
Bst6I	CTCTTC	3 cut(s)	72, 391, 1168
BstAUI	TGTACA	1 cut(s)	1085
BstBAI	YACGTR	1 cut(s)	777
BstC8I	GCNNGC	2 cut(s)	1228, 1278
BstDEI	CTNAG	9 cut(s)	13, 68, 154, 184, 235, 517, 695, 863, 1014
BstDSI	CCRYGG	1 cut(s)	457
BstEII	GGTNACC	1 cut(s)	534
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstF5I	GGATG	3 cut(s)	374, 449, 906
BstKTI	GATC	8 cut(s)	165, 213, 317, 340, 418, 565, 715, 929
BstMAI	GTCTC	1 cut(s)	991
BstMBI	GATC	8 cut(s)	162, 210, 314, 337, 415, 562, 712, 926
BstMWI	GCNNNNNNNGC	2 cut(s)	867, 1227
BstNI	CCWGG	4 cut(s)	279, 393, 540, 555
BstPI	GGTNACC	1 cut(s)	534
BstSCI	CCNGG	4 cut(s)	277, 391, 538, 553
BstSLI	GKGCMC	1 cut(s)	811
BstV1I	GCAGC	2 cut(s)	215, 290
BstV2I	GAAGAC	1 cut(s)	1054
BstX2I	RGATCY	2 cut(s)	210, 562
BstXI	CCANNNNNNTGG	1 cut(s)	472
BstYI	RGATCY	2 cut(s)	210, 562
Bsu15I	ATCGAT	1 cut(s)	165
BsuRI	GGCC	3 cut(s)	630, 809, 1179
BsuTUI	ATCGAT	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	457
BtgZI	GCGATG	1 cut(s)	1039
BtsCI	GGATG	3 cut(s)	374, 449, 906
BtsI	GCAGTG	2 cut(s)	903, 980
BtsIMutI	CAGTG	5 cut(s)	232, 811, 892, 903, 980
BveI	ACCTGC	1 cut(s)	866
Cac8I	GCNNGC	2 cut(s)	1228, 1278
CciI	TCATGA	1 cut(s)	989
Cfr10I	RCCGGY	2 cut(s)	227, 1276
Cfr13I	GGNCC	6 cut(s)	51, 680, 807, 808, 855, 1178
ClaI	ATCGAT	1 cut(s)	165
Csp6I	GTAC	2 cut(s)	824, 1086
CspCI	CAANNNNNGTGG	5 cut(s)	34, 179, 214, 484, 519
CviAII	CATG	3 cut(s)	267, 458, 990
CviQI	GTAC	2 cut(s)	824, 1086
DdeI	CTNAG	9 cut(s)	13, 68, 154, 184, 235, 517, 695, 863, 1014
DpnI	GATC	8 cut(s)	164, 212, 316, 339, 417, 564, 714, 928
DpnII	GATC	8 cut(s)	162, 210, 314, 337, 415, 562, 712, 926
EaeI	YGGCCR	1 cut(s)	628
Eam1104I	CTCTTC	3 cut(s)	72, 391, 1168
EarI	CTCTTC	3 cut(s)	72, 391, 1168
Eco130I	CCWWGG	2 cut(s)	457, 1076
Eco24I	GRGCYC	2 cut(s)	403, 811
Eco47I	GGWCC	3 cut(s)	51, 680, 855
Eco57I	CTGAAG	1 cut(s)	1192
Eco91I	GGTNACC	1 cut(s)	534
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EcoO109I	RGGNCCY	2 cut(s)	807, 1178
EcoO65I	GGTNACC	1 cut(s)	534
EcoRII	CCWGG	4 cut(s)	277, 391, 538, 553
EcoT14I	CCWWGG	2 cut(s)	457, 1076
EcoT38I	GRGCYC	2 cut(s)	403, 811
ErhI	CCWWGG	2 cut(s)	457, 1076
FaeI	CATG	3 cut(s)	270, 461, 993
FaqI	GGGAC	1 cut(s)	693
FatI	CATG	3 cut(s)	266, 457, 989
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	2 cut(s)	204, 304
FokI	GGATG	3 cut(s)	381, 456, 893
FriOI	GRGCYC	2 cut(s)	403, 811
Fsp4HI	GCNGC	2 cut(s)	204, 304
FspBI	CTAG	6 cut(s)	64, 567, 657, 676, 735, 1066
GluI	GCNGC	2 cut(s)	204, 304
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	3 cut(s)	630, 809, 1179
HapII	CCGG	4 cut(s)	228, 413, 1092, 1277
Hin1II	CATG	3 cut(s)	270, 461, 993
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	1028
HinfI	GANTC	4 cut(s)	123, 147, 381, 743
HpaII	CCGG	4 cut(s)	228, 413, 1092, 1277
HphI	GGTGA	4 cut(s)	449, 1136, 1160, 1313
Hpy166II	GTNNAC	2 cut(s)	151, 389
Hpy188I	TCNGA	5 cut(s)	210, 342, 866, 1168, 1240
Hpy188III	TCNNGA	7 cut(s)	114, 638, 735, 930, 990, 1066, 1210
Hpy8I	GTNNAC	2 cut(s)	151, 389
HpyAV	CCTTC	5 cut(s)	64, 350, 797, 1012, 1101
HpyCH4III	ACNGT	2 cut(s)	427, 893
HpyCH4IV	ACGT	2 cut(s)	758, 776
HpyCH4V	TGCA	7 cut(s)	5, 454, 821, 896, 922, 1099, 1226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	867, 1227
HpyF3I	CTNAG	9 cut(s)	13, 68, 154, 184, 235, 517, 695, 863, 1014
HpySE526I	ACGT	2 cut(s)	758, 776
Hsp92II	CATG	3 cut(s)	270, 461, 993
KroI	GCCGGC	1 cut(s)	1276
KroNI	GCCGGC	1 cut(s)	1278
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	8 cut(s)	162, 210, 314, 337, 415, 562, 712, 926
LguI	GCTCTTC	1 cut(s)	391
LmnI	GCTCC	3 cut(s)	467, 608, 791
Lsp1109I	GCAGC	2 cut(s)	215, 290
LweI	GCATC	1 cut(s)	857
MaeI	CTAG	6 cut(s)	64, 567, 657, 676, 735, 1066
MaeII	ACGT	2 cut(s)	758, 776
MaeIII	GTNAC	4 cut(s)	230, 534, 581, 887
MalI	GATC	8 cut(s)	164, 212, 316, 339, 417, 564, 714, 928
MboI	GATC	8 cut(s)	162, 210, 314, 337, 415, 562, 712, 926
MfeI	CAATTG	1 cut(s)	496
MflI	RGATCY	2 cut(s)	210, 562
MhlI	GDGCHC	2 cut(s)	403, 811
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	9 cut(s)	191, 448, 484, 496, 917, 980, 1046, 1234, 1243
MluNI	TGGCCA	1 cut(s)	630
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	2 cut(s)	409, 712
Mox20I	TGGCCA	1 cut(s)	630
MroNI	GCCGGC	1 cut(s)	1276
MroXI	GAANNNNTTC	3 cut(s)	127, 177, 360
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	5 cut(s)	645, 754, 1201, 1215, 1290
MslI	CAYNNNNRTG	2 cut(s)	708, 911
Msp20I	TGGCCA	1 cut(s)	630
MspA1I	CMGCKG	1 cut(s)	48
MspI	CCGG	4 cut(s)	228, 413, 1092, 1277
MspR9I	CCNGG	4 cut(s)	279, 393, 540, 555
MunI	CAATTG	1 cut(s)	496
Mva1269I	GAATGC	2 cut(s)	1101, 1264
MvaI	CCWGG	4 cut(s)	279, 393, 540, 555
MwoI	GCNNNNNNNGC	2 cut(s)	867, 1227
NaeI	GCCGGC	1 cut(s)	1278
NcoI	CCATGG	1 cut(s)	457
NdeII	GATC	8 cut(s)	162, 210, 314, 337, 415, 562, 712, 926
NgoMIV	GCCGGC	1 cut(s)	1276
NlaIII	CATG	3 cut(s)	270, 461, 993
NlaIV	GGNNCC	5 cut(s)	463, 681, 793, 808, 809
NmeAIII	GCCGAG	1 cut(s)	1111
NmuCI	GTSAC	3 cut(s)	230, 581, 887
PagI	TCATGA	1 cut(s)	989
PciSI	GCTCTTC	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PctI	GAATGC	2 cut(s)	1101, 1264
PdiI	GCCGGC	1 cut(s)	1278
PdmI	GAANNNNTTC	3 cut(s)	127, 177, 360
PfeI	GAWTC	3 cut(s)	123, 381, 743
PkrI	GCNGC	2 cut(s)	205, 305
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	777
Psp6I	CCWGG	4 cut(s)	277, 391, 538, 553
PspEI	GGTNACC	1 cut(s)	534
PspGI	CCWGG	4 cut(s)	277, 391, 538, 553
PspN4I	GGNNCC	5 cut(s)	463, 681, 793, 808, 809
PspOMI	GGGCCC	1 cut(s)	807
PspPI	GGNCC	6 cut(s)	51, 680, 807, 808, 855, 1178
PsuI	RGATCY	2 cut(s)	210, 562
PvuII	CAGCTG	1 cut(s)	48
RsaI	GTAC	2 cut(s)	825, 1087
RsaNI	GTAC	2 cut(s)	824, 1086
RseI	CAYNNNNRTG	2 cut(s)	708, 911
SapI	GCTCTTC	1 cut(s)	391
SaqAI	TTAA	5 cut(s)	645, 754, 1201, 1215, 1290
SatI	GCNGC	2 cut(s)	204, 304
Sau3AI	GATC	8 cut(s)	162, 210, 314, 337, 415, 562, 712, 926
Sau96I	GGNCC	6 cut(s)	51, 680, 807, 808, 855, 1178
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	4 cut(s)	279, 393, 540, 555
SduI	GDGCHC	2 cut(s)	403, 811
SfaNI	GCATC	1 cut(s)	857
SinI	GGWCC	3 cut(s)	51, 680, 855
SmiMI	CAYNNNNRTG	2 cut(s)	708, 911
Sse9I	AATT	9 cut(s)	191, 448, 484, 496, 917, 980, 1046, 1234, 1243
SspI	AATATT	1 cut(s)	293
SspMI	CTAG	6 cut(s)	64, 567, 657, 676, 735, 1066
StyD4I	CCNGG	4 cut(s)	277, 391, 538, 553
StyI	CCWWGG	2 cut(s)	457, 1076
TaaI	ACNGT	2 cut(s)	427, 893
TaiI	ACGT	2 cut(s)	761, 779
TaqI	TCGA	2 cut(s)	165, 960
TasI	AATT	9 cut(s)	191, 448, 484, 496, 917, 980, 1046, 1234, 1243
TatI	WGTACW	1 cut(s)	1085
TfiI	GAWTC	3 cut(s)	123, 381, 743
Tru1I	TTAA	5 cut(s)	645, 754, 1201, 1215, 1290
Tru9I	TTAA	5 cut(s)	645, 754, 1201, 1215, 1290
TscAI	CASTG	5 cut(s)	239, 818, 892, 903, 980
TseFI	GTSAC	3 cut(s)	230, 581, 887
TseI	GCWGC	2 cut(s)	203, 303
Tsp45I	GTSAC	3 cut(s)	230, 581, 887
TspDTI	ATGAA	8 cut(s)	31, 136, 256, 325, 460, 634, 895, 1042
TspGWI	ACGGA	1 cut(s)	899
TspRI	CASTG	5 cut(s)	239, 818, 892, 903, 980
VpaK11BI	GGWCC	3 cut(s)	51, 680, 855
XagI	CCTNNNNNAGG	1 cut(s)	111
XapI	RAATTY	3 cut(s)	448, 1046, 1234
XbaI	TCTAGA	2 cut(s)	734, 1065
XmnI	GAANNNNTTC	3 cut(s)	127, 177, 360
XspI	CTAG	6 cut(s)	64, 567, 657, 676, 735, 1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.