Rorug07G0201900
TCP Family

T-complex protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005785
Physical Location & Seq
Forward (+)
17658518 .. 17660851
2334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0201900.1

Sequence Viewer

Length: 1806 bp
ATGCAAAGGTTTCTCTTCAAGAGAATCCAAAAACCCCTCCAAAACCTTGCACTTTGTGCAAATTATATTACCACAACTATCCCAACTCATAACAATACCAATGCCACAACAATTCCTCAAGTTGAAACTTCAGACTCATGGGCAAGTATCATTTTTGACCTTGCCCAATGTGGCACCAGAACTGGGCATGCCTTATTTGAGGCCTCTCACATGCTCAACTCTGGTACCAAACCAAATGGGTACTTGTTTGTTCAGATGGTCAGAGCTTCAGCCAACCTGGGCTGGGATTTCTTCAGCTTGCAACTTCATAGCTACATTTTACGATCTGGGTTTTGCTCCAATGTTTTTGTTTCCACTGCTCTGATCAATTTTTATATCGGAATCGGCTCATTGAGTGATGCTCGCAAGGTGTTTGTTGAAATTCCTCATCCAAGTGTAGTTTCTTGGAATTCTTTGATTTCTGGATACGTGCATTCTGGGCAGTTCTGTAAAGCGTTGAGTTTGTTTCTTCAGCTGGAAAGGTCTGAAGTTTCTGTAGATTCATATTCGTTAACTGCGGCCTTAGGTGCATGTGGCCAACTGAGCTTTCTGCTGCTTGGCAAGACAGTTCACTCAAAGACTGTGAAACTAGGTTTGGAAAATAGCACTGTTGTTTTGAATTGTTTGATTGACATGTATGGGAAATGTGGATCACTTCAGGAGGCAATCCTTGTGTTTAATAACATGATAGAAAAGGATACTATTTCGTGGAATTCCGTAATAGCGGCAAGTGCAAGAAATGGAAGCTTACAACAAGCATTCAGTTTTTTGCAGCAGATGCATAACCCTGATATAATCTCATACAATGAACTGATAAATGGCTTTTCGCGGTTTGGAGACGTAGAAGATGCTATTAAACTTCTATTCAGTATGCCAAATCCAAATTCATCTTCCTGGAATTCAATAATTACAGGCTATGTGAACAGGGGTCGAGCAGGAGAAGCTTTGGATTTCTTCTGCAAAATGCACTTGGAAAATGTAGAAATGGATCAATTCACGTTTTCAAGCATTTTAAGTGGAGTTGCAGGTATTTCGGCTTTAACGTGGGGCATGCTAATCCATTGTTGCACCATAAAATTTGGTTTGGCTACATCAATTGTGGTTGGTAGTTCTTTGATTGACATGTACTCCAAATGCGGGAAGGTAAGCGATGCCGAAACAATCTTCCATTTACTTCCAGAGAAGAATTTGGTCACATGGAATTCAATGATCTCTGGCTTTTCTTGGAACAGTAATCCGTCAAAGATGATGCTCCTTTTCGAGCAGATGAAAATGGAGAGAGATGTCAAGCCTGATGAGATCACATTCCTTAATGTTATATCTGCATGTTTACATAATCAAATTCCATTCGAGAATGCACTTCAGTACTTTGAATCAATGATCAAAGAGTATGGGATTGAGCCAACTCTTGAGCACTGTTGTTCTATGATTCGGCTAATGGGGCAGAGAGGGGAGGTGTGGAGAGCAGAGAAGATGATATTCCAGCTCGGTTTTGGGGCATGCGGATCAGTTTGGAGGGCACTGCTCGGTGCTTGTGGAAAGTGTAGAGATTTGAAAGTTGCCAAAAATGCAGCTGCAAAGGTGATACAGTTAGAAGGTGATGATGAATTTGTTTATGTTACGATGTCTAACTTGTATGCACACTATGCAAAGTGGGAAGATGTGAGGGTAGCGAGGAAGCTGATGAAGGAGAAAGGAATGAGAAAGGAAGCTGGTTATAGTTGGATTGAAATGGAAAATGTTATCTCAAATTCTGAATTACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tcp11

Protein Analysis

601

Amino Acids

67.08

Weight (kDa)

6.54

Isoelectric Point (pI)

32.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 144 - 191 1.3e-08 PPR repeat family
PPR_1 PF12854 274 - 304 3e-06 PPR repeat
PPR_2 PF13041 307 - 355 1.8e-11 PPR repeat family
PPR_2 PF13041 409 - 457 1.2e-08 PPR repeat family
PPR PF01535 411 - 438 4.5e-06 PPR repeat
E_motif PF20431 530 - 590 3.7e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1055
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 2 cut(s) 173, 224
AccII CGCG 1 cut(s) 868
AciI CCGC 5 cut(s) 557, 764, 868, 1176, 1542
AclWI GGATC 3 cut(s) 697, 1035, 1552
AcoI YGGCCR 1 cut(s) 574
AcuI CTGAAG 7 cut(s) 114, 252, 277, 494, 546, 680, 1385
AdeI CACNNNGTG 1 cut(s) 56
AfaI GTAC 4 cut(s) 226, 242, 1166, 1406
AfiI CCNNNNNNNGG 3 cut(s) 183, 283, 1176
AflIII ACRYGT 2 cut(s) 672, 1161
AjnI CCWGG 2 cut(s) 276, 932
Alw21I GWGCWC 1 cut(s) 1455
Alw26I GTCTC 1 cut(s) 870
AlwI GGATC 3 cut(s) 697, 1035, 1552
AoxI GGCC 3 cut(s) 201, 558, 574
ApeKI GCWGC 4 cut(s) 592, 811, 1610, 1613
Asp718I GGTACC 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 1633, 1649
AxyI CCTNAGG 1 cut(s) 562
BaeGI GKGCMC 1 cut(s) 1561
BaeI ACNNNNGTAYC 2 cut(s) 208, 241
BalI TGGCCA 1 cut(s) 576
BanI GGYRCC 2 cut(s) 173, 224
Bbv12I GWGCWC 1 cut(s) 1455
BbvI GCAGC 4 cut(s) 579, 823, 1600, 1622
BccI CCATC 1 cut(s) 250
BcgI CGANNNNNNTGC 2 cut(s) 1053, 1087
BciT130I CCWGG 2 cut(s) 278, 934
BciVI GTATCC 2 cut(s) 458, 730
BclI TGATCA 2 cut(s) 363, 1419
BcoDI GTCTC 1 cut(s) 870
BfaI CTAG 1 cut(s) 629
BfmI CTRYAG 1 cut(s) 534
BfuAI ACCTGC 1 cut(s) 1055
BfuI GTATCC 2 cut(s) 458, 730
BisI GCNGC 6 cut(s) 558, 593, 765, 812, 1611, 1614
BlsI GCNGC 6 cut(s) 559, 594, 766, 813, 1612, 1615
BmcAI AGTACT 1 cut(s) 1406
Bme1390I CCNGG 2 cut(s) 278, 934
BmiI GGNNCC 2 cut(s) 175, 226
BmrFI CCNGG 2 cut(s) 278, 934
BmrI ACTGGG 1 cut(s) 192
BmsI GCATC 5 cut(s) 388, 807, 877, 1180, 1278
BmuI ACTGGG 1 cut(s) 192
BplI GAGNNNNNCTC 2 cut(s) 385, 417
BpuEI CTTGAG 2 cut(s) 102, 1469
BsaAI YACGTR 1 cut(s) 469
BsaJI CCNNGG 1 cut(s) 277
BsaXI ACNNNNNCTCC 2 cut(s) 1151, 1181
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 283, 1176
Bse1I ACTGG 1 cut(s) 187
Bse21I CCTNAGG 1 cut(s) 562
BseBI CCWGG 2 cut(s) 278, 934
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 427
BseLI CCNNNNNNNGG 3 cut(s) 183, 283, 1176
BseMII CTCAG 1 cut(s) 572
BseNI ACTGG 1 cut(s) 187
BseSI GKGCMC 1 cut(s) 1561
BseXI GCAGC 4 cut(s) 579, 823, 1600, 1622
BseYI CCCAGC 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 868
BshFI GGCC 3 cut(s) 203, 560, 576
BshNI GGYRCC 2 cut(s) 173, 224
BsiHKAI GWGCWC 1 cut(s) 1455
BslI CCNNNNNNNGG 3 cut(s) 183, 283, 1176
BsmAI GTCTC 1 cut(s) 870
BsmBI CGTCTC 1 cut(s) 870
BsmI GAATGC 3 cut(s) 472, 797, 1399
BsnI GGCC 3 cut(s) 203, 560, 576
Bsp1286I GDGCHC 2 cut(s) 1455, 1561
Bsp143I GATC 8 cut(s) 323, 363, 689, 1027, 1248, 1338, 1419, 1544
BspACI CCGC 5 cut(s) 557, 764, 868, 1176, 1542
BspANI GGCC 3 cut(s) 203, 560, 576
BspCNI CTCAG 1 cut(s) 573
BspFNI CGCG 1 cut(s) 868
BspLI GGNNCC 2 cut(s) 175, 226
BspMI ACCTGC 1 cut(s) 1055
BspPI GGATC 3 cut(s) 697, 1035, 1552
BspT107I GGYRCC 2 cut(s) 173, 224
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 8 cut(s) 323, 363, 689, 1027, 1248, 1338, 1419, 1544
Bst2UI CCWGG 2 cut(s) 278, 934
Bst4CI ACNGT 6 cut(s) 607, 622, 649, 1271, 1457, 1629
Bst6I CTCTTC 1 cut(s) 20
BstAPI GCANNNNNTGC 3 cut(s) 56, 817, 1685
BstBAI YACGTR 1 cut(s) 469
BstC8I GCNNGC 5 cut(s) 189, 299, 403, 1091, 1540
BstDEI CTNAG 2 cut(s) 562, 581
BstF5I GGATG 1 cut(s) 427
BstFNI CGCG 1 cut(s) 868
BstKTI GATC 8 cut(s) 326, 366, 692, 1030, 1251, 1341, 1422, 1547
BstMAI GTCTC 1 cut(s) 870
BstMBI GATC 8 cut(s) 323, 363, 689, 1027, 1248, 1338, 1419, 1544
BstNI CCWGG 2 cut(s) 278, 934
BstNSI RCATGY 8 cut(s) 191, 214, 573, 676, 1093, 1165, 1368, 1542
BstSCI CCNGG 2 cut(s) 276, 932
BstSFI CTRYAG 1 cut(s) 534
BstSLI GKGCMC 1 cut(s) 1561
BstUI CGCG 1 cut(s) 868
BstV1I GCAGC 4 cut(s) 579, 823, 1600, 1622
Bsu36I CCTNAGG 1 cut(s) 562
BsuI GTATCC 2 cut(s) 458, 730
BsuRI GGCC 3 cut(s) 203, 560, 576
BtgZI GCGATG 1 cut(s) 1203
BtsCI GGATG 1 cut(s) 427
BtsI GCAGTG 2 cut(s) 354, 1559
BtsIMutI CAGTG 4 cut(s) 354, 645, 1453, 1559
BveI ACCTGC 1 cut(s) 1055
Cac8I GCNNGC 5 cut(s) 189, 299, 403, 1091, 1540
Csp6I GTAC 4 cut(s) 225, 241, 1165, 1405
CviQI GTAC 4 cut(s) 225, 241, 1165, 1405
DdeI CTNAG 2 cut(s) 562, 581
DpnI GATC 8 cut(s) 325, 365, 691, 1029, 1250, 1340, 1421, 1546
DpnII GATC 8 cut(s) 323, 363, 689, 1027, 1248, 1338, 1419, 1544
DraIII CACNNNGTG 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 574
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 203
Eco57I CTGAAG 7 cut(s) 114, 252, 277, 494, 546, 680, 1385
Eco81I CCTNAGG 1 cut(s) 562
EcoRI GAATTC 4 cut(s) 448, 751, 937, 1240
EcoRII CCWGG 2 cut(s) 276, 932
EcoT22I ATGCAT 1 cut(s) 822
Esp3I CGTCTC 1 cut(s) 870
FauI CCCGC 1 cut(s) 1169
FbaI TGATCA 2 cut(s) 363, 1419
Fnu4HI GCNGC 6 cut(s) 558, 593, 765, 812, 1611, 1614
FokI GGATG 1 cut(s) 414
Fsp4HI GCNGC 6 cut(s) 558, 593, 765, 812, 1611, 1614
FspBI CTAG 1 cut(s) 629
GluI GCNGC 6 cut(s) 558, 593, 765, 812, 1611, 1614
GsaI CCCAGC 1 cut(s) 286
HaeIII GGCC 3 cut(s) 203, 560, 576
HincII GTYRAC 1 cut(s) 552
HindII GTYRAC 1 cut(s) 552
HindIII AAGCTT 2 cut(s) 784, 981
HinfI GANTC 6 cut(s) 24, 134, 381, 539, 1412, 1468
HpaI GTTAAC 1 cut(s) 552
HphI GGTGA 2 cut(s) 1633, 1649
Hpy166II GTNNAC 4 cut(s) 552, 610, 961, 1370
Hpy188I TCNGA 7 cut(s) 133, 255, 263, 363, 380, 526, 1795
Hpy188III TCNNGA 6 cut(s) 19, 462, 698, 1217, 1390, 1448
Hpy8I GTNNAC 4 cut(s) 552, 610, 961, 1370
HpyAV CCTTC 3 cut(s) 1174, 1628, 1720
HpyCH4III ACNGT 6 cut(s) 607, 622, 649, 1271, 1457, 1629
HpyCH4IV ACGT 4 cut(s) 468, 879, 1037, 1082
HpyF3I CTNAG 2 cut(s) 562, 581
HpySE526I ACGT 4 cut(s) 468, 879, 1037, 1082
KpnI GGTACC 1 cut(s) 228
Ksp22I TGATCA 2 cut(s) 363, 1419
KspAI GTTAAC 1 cut(s) 552
Kzo9I GATC 8 cut(s) 323, 363, 689, 1027, 1248, 1338, 1419, 1544
LmnI GCTCC 2 cut(s) 341, 1296
Lsp1109I GCAGC 4 cut(s) 579, 823, 1600, 1622
LweI GCATC 5 cut(s) 388, 807, 877, 1180, 1278
MaeI CTAG 1 cut(s) 629
MaeII ACGT 4 cut(s) 468, 879, 1037, 1082
MaeIII GTNAC 2 cut(s) 1231, 1657
MalI GATC 8 cut(s) 325, 365, 691, 1029, 1250, 1340, 1421, 1546
MboI GATC 8 cut(s) 323, 363, 689, 1027, 1248, 1338, 1419, 1544
MfeI CAATTG 1 cut(s) 1134
MhlI GDGCHC 2 cut(s) 1455, 1561
MlsI TGGCCA 1 cut(s) 576
MluNI TGGCCA 1 cut(s) 576
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 1742
Mox20I TGGCCA 1 cut(s) 576
Mph1103I ATGCAT 1 cut(s) 822
MscI TGGCCA 1 cut(s) 576
MseI TTAA 6 cut(s) 551, 717, 894, 1052, 1079, 1350
MslI CAYNNNNRTG 1 cut(s) 432
Msp20I TGGCCA 1 cut(s) 576
MspA1I CMGCKG 2 cut(s) 514, 1613
MspR9I CCNGG 2 cut(s) 278, 934
MunI CAATTG 1 cut(s) 1134
Mva1269I GAATGC 3 cut(s) 472, 797, 1399
MvaI CCWGG 2 cut(s) 278, 934
MvnI CGCG 1 cut(s) 868
NdeII GATC 8 cut(s) 323, 363, 689, 1027, 1248, 1338, 1419, 1544
NlaIV GGNNCC 2 cut(s) 175, 226
NmuCI GTSAC 1 cut(s) 1231
NsiI ATGCAT 1 cut(s) 822
NspI RCATGY 8 cut(s) 191, 214, 573, 676, 1093, 1165, 1368, 1542
PaeI GCATGC 3 cut(s) 191, 1093, 1542
PceI AGGCCT 1 cut(s) 203
PciI ACATGT 2 cut(s) 672, 1161
PcsI WCGNNNNNNNCGW 1 cut(s) 1079
PctI GAATGC 3 cut(s) 472, 797, 1399
PfeI GAWTC 5 cut(s) 24, 381, 539, 1412, 1468
PfoI TCCNGGA 1 cut(s) 932
PkrI GCNGC 6 cut(s) 559, 594, 766, 813, 1612, 1615
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
Ppu21I YACGTR 1 cut(s) 469
PscI ACATGT 2 cut(s) 672, 1161
Psp6I CCWGG 2 cut(s) 276, 932
PspFI CCCAGC 1 cut(s) 282
PspGI CCWGG 2 cut(s) 276, 932
PspN4I GGNNCC 2 cut(s) 175, 226
PvuII CAGCTG 2 cut(s) 514, 1613
RsaI GTAC 4 cut(s) 226, 242, 1166, 1406
RsaNI GTAC 4 cut(s) 225, 241, 1165, 1405
RseI CAYNNNNRTG 1 cut(s) 432
SaqAI TTAA 6 cut(s) 551, 717, 894, 1052, 1079, 1350
SatI GCNGC 6 cut(s) 558, 593, 765, 812, 1611, 1614
Sau3AI GATC 8 cut(s) 323, 363, 689, 1027, 1248, 1338, 1419, 1544
ScaI AGTACT 1 cut(s) 1406
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 2 cut(s) 278, 934
SduI GDGCHC 2 cut(s) 1455, 1561
SfaNI GCATC 5 cut(s) 388, 807, 877, 1180, 1278
SfcI CTRYAG 1 cut(s) 534
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 2 cut(s) 117, 1448
SmoI CTYRAG 2 cut(s) 117, 1448
SphI GCATGC 3 cut(s) 191, 1093, 1542
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 5 cut(s) 557, 764, 868, 1176, 1542
SspMI CTAG 1 cut(s) 629
StuI AGGCCT 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 276, 932
TaaI ACNGT 6 cut(s) 607, 622, 649, 1271, 1457, 1629
TaiI ACGT 4 cut(s) 471, 882, 1040, 1085
TaqI TCGA 3 cut(s) 970, 1299, 1389
TatI WGTACW 2 cut(s) 1164, 1404
TauI GCSGC 2 cut(s) 560, 767
TfiI GAWTC 5 cut(s) 24, 381, 539, 1412, 1468
Tru1I TTAA 6 cut(s) 551, 717, 894, 1052, 1079, 1350
Tru9I TTAA 6 cut(s) 551, 717, 894, 1052, 1079, 1350
TscAI CASTG 4 cut(s) 361, 652, 1460, 1566
TseFI GTSAC 1 cut(s) 1231
TseI GCWGC 4 cut(s) 592, 811, 1610, 1613
Tsp45I GTSAC 1 cut(s) 1231
TspDTI ATGAA 7 cut(s) 296, 531, 861, 915, 1322, 1659, 1739
TspGWI ACGGA 2 cut(s) 745, 1266
TspRI CASTG 4 cut(s) 361, 652, 1460, 1566
XceI RCATGY 8 cut(s) 191, 214, 573, 676, 1093, 1165, 1368, 1542
XcmI CCANNNNNNNNNTGG 1 cut(s) 1529
XspI CTAG 1 cut(s) 629
ZrmI AGTACT 1 cut(s) 1406
Zsp2I ATGCAT 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.