Rroxscaffold_3G00238480
TCP Family

T-complex protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005785
Physical Location & Seq
Forward (+)
26676351 .. 26684119
7769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00238480.1

Sequence Viewer

Length: 3996 bp
ATGGTCCCCGGTGGTGTAGTTTTGGATTTCCCGGCCGGTGAAACGCCGTCGTCTCCTCCAAGACTACCCCGCAGGCTCAGACGGAGGCTCGACCTTGTTCAGTCCTCCAAGACTCCCAACACTGTCGAACAAATCCAAACCAAGCTTCGACTCGCCGATCTTCGCCGCCAGGAACACTATGAAAAGTTGTCAAACAAGGCCCGGACAAAGCCCAGAAGCCCCTCTCGATCTTCTTCTCAAGAGGAAGACCTTGGCGAGCGACTGGATGCCAAGCTCCAAGCTGCTGAGAAGAAAAGGTTGCTTATTTTGGGAAATGCTCAAATGCGCTTAGCTAAGTTGGATGAGTTGCGGCAAGCAGCTAAAAGTGGCGTAGAAATGCGTTTTGAGAAGGAACGACAGAAGCTTGGTTCAAAAGTTGAATTACGTTTTCAGCAGGCAGAGGCAAATAGAATGCTTATGCTCAAGGCTTATAGACAAAGAAGGGCCAACTTGAAGGAGAGGTCATCTCAGTCGTTGTTGCGAAAGATGGCTTGGGAGAATAAGTACAAGGAGCGCGTGCGTGCTGCAATTAACCAAAAACGCGCAGCTGCTGAGAAAAAGCGACTGGTACTTTTGGAAGAAGAGAAGAAGAGGGCATACGCCAGGACGTTGCAAGTGCAAAGAGTAGCGAAGTCTGTCTCTCACCAACGTGAGATTGAAAGGAGAGCGAAAAGGGATCAGTTAGAAGACCGGTTGCAGAGGGCAAAGAGACAAAGAGCAGAATATCTCAAGCAAAGAGGAAAGATACAGAATTCATTTCAAGTCAGTTGGAATAGGATGCACAAACAGGCTGATTTCCTGTCTAGAAAGTTAGCAAGGTGTTGGAGACGGTTCCACAGGCTAAAGAGAACTACGTTTGCTTTGGCAAAAGCTTACAATACCTTGAAACTTGAGGAAAATAGCGTCAAGTCAATGCCGTTCGAGCAGCTTGCAATTCTGATTGAATCACCTGATACCCTTCAGACTGTGAAGGCTCTACTTGATCGACTTGAGAATCGGTTGAAAGTCTCCAAGACTGTAGCCTCTATAAACTATCCGTCCAGTATTGATAACATAGATCACCTTCTCAAACGAGTTGCTTCTCCCAAAAGGAGGACCACACCAAGGACATCTTTGAGAAGCAGGGAGGGAAAGAAAGCCTCTTCTGTCAGGGCCACAACCAGAACTTCAGCTAAATTAACAAGGTATCAAGTGAGAGTGGTTCTTTGCGCTTACATGATTTTGAGTCATCCAGATGCGGTTTTCAATGGTCAAGGAGAGCGTGAGACTTCTCTGGCCAAATCTGCAGAAGAATTTGTTAGAGAGTTTGAGTTGTTGGTGAAGACTATATTACAGGGCCCCGTCAACAGTTCTGAGGAAGAGTCTGATTCCACATCGCCCAAACGCTTAACCTTCAGATCTCAGCTAGGAGCTTTTGATAAAGCGTGGTGCTCCTACTTGAGTTGCTTTGTGGCGTGGAAGGTTAAGGATGCCCAGTTGTTGGAGGGAGATTTAGTGAGGGCAGCTTGCCAGATGGAGCTGTCTATGATTCAAACTTGCAAGATGACTTCAGAAGGACATACTGCCGATCTCACTCATGATATGAAGGCTATTCAGAAACAGGTCGCAGAAGACCAAAAGCTACTGAGAGAAAAGGTGCAACACTTAAGTGGAGAAGCTGGGATTGAGCGTATGACATCTGCTTTATCTGAAACACGGTCCAAGTATTTTGCAGCAAAGGAAAATGGAAGTCCATCAGGGTTGCAAACCACACAGTCTGTTTCTCCAAGCCCTCCAAGTTCATCGGCTGGTCCTTCTGTTTCTAGCTTAGATAAGAAGAGTAATCCAAGTCGTGTAGTTCGTTCCCTATTTCAGGAAGATGAATCTATTCGTCAGAAAGGATTAGAGTCAACTGAGATTGGATTGATTGTGAATGAGTTCTCTAAGACCAATTTGGGCGGGCAGCTTGGATCTTCTTCCCAAAAGCCGGTCACTGAGAATGAACTGATTGTGAATGAGTTTCTCCATGAGCAAAACCAGGCTTTTGCTAATATTTTCAATGCTGCCGATGAAGATCAAAATAATGTCCAGTCAAAGATCAGAAACACTATGGAGAAGGCTTTCTGGGATGGCATAATGGAATCTGTAAACCAGGAAGAGCCCAACTATGACCGGATCATTCAACTGTTGGAGGAGGTGAGGGATGAAATTTGCACCATGGCTCCACAGAGCTGGAAACAAGAAATTGTTGAAGCAATTGATGTGGATATTCTCTCTCAGGTGCTAAAATCTGGTAACCTGGATATTGATTACCTGGGAAAGATCCTAGAGTTTTCAATGGTCACTTTGCGAAAGCTCTCTGCTCCTGCGAATGATGATGAAATGATGGCCACTCTCCAGAGTTTAAGGAAAGAACTAGATGAGATATGTAATGCTAGGGACCAGTCCAACTGCTCAGGTGTCATTGCTATGATCAAGGGTCTGCGTTTTGTTCTAGAGCAGATTCAGGTGCTTAAACGTGAGATAAGCAAAGCACGTATAAGAATAATGGAGCCTTTGCTGAAGGGGCCCACTGGTTTGCAGTACCTTAGAAATGCCTTTGCCGATCGCTATGGACCTGCCTCAGATGCCAATACCTCTCTACCAGTGACGGTCCAGTGGCTTTCATCCGTGTGGAATTGCAAAGATCAGGAGTGGCAAGAACATAAGATTGCTTCCTCGACTTTGATGAGCAGTGATAATTTGTCTCATGAGTTTCTTCCTTCCACCACCCTTAGAAGTGGTGGAAGCTTTCTGTTGAAATCAAATTCTTCATCGCTGTCTTCTAGAAATATCCAAGGTAATGTACAACCGGAATGCAAGGGAGAAGGAGTTGATTTGTTGGTGAGGCTCGGCTTGTTGAAGTTGGTGAGTGGTGTTTCTGGTCTGACTGAAGAGGCCCTGCCTGAAACTTTTATGCTTAACCTTTCTAGATTAAGGGCTGTGCAGGCTCAAATTCAGAAAATTATTGTTTCTTCCATAAGCATTCTTATTTGCCGGCAAACCATATTAAGCGAGGGGGTGATAACAACGCCCACAGACATGGAGGGCATCCTGTCAAGATGCATTGAGCGGCTTTTGGGGATATTGGACAGTGTTGAAGATGCAGGTATGGAAGAAATTGTTGAATCAATCAGTGATTTCTCCATCAATGGAAATGAAGTTGTGGACACTGAGAACGTTCGGTCAAGAAAGATGGTTATAGCCCGGATGTTAGCAAAGAGCCTGCAAGCTGGGGATCCCGTGTTTGAGAGGGTTTCCCGTGCTGTTTATATGGCTGCAAGAGGAGCGGTTCTTGGGGGGAGTGGACCTGTTGGAAGAAAATTGGCTGAAACTGCACTCCGGCAAGTTGGAGCAGCGGTGCTGACTGACAGTGTGGTGGAAGCTGCTGAAGTTTTAGTTGTGGCTGCTACCATATCAGTTGGTGTTCACGGAGCATGTCCAACAAAAGTTGTGCGTAAGTGCACAACAAGACATTGGGAGCTAAATCAGGCCATCAACACTGGGGCATTTGTTGCGCTTTCTGCTCTTATTTTGGTCTTACTAAAACCTGCCTTTGCACCACCGGCTCTTGCTTCTTTTCAAACTGCAACTAAGACAGGTGGTCCAGCTGCTGTTGCAGTTGGGGGAAGACTCATCCAGGCTGAATTACTTAGTAGTGCATGGACCGGTTTCTTTGCTGGTTGCTTGCACACATTATCAGGGCCTGACCACCTAGCTGCTTTGGCTCCACTCTCAATTGGGCGTACCCGCATTGAAAGTGCTCTTGTTGGAGCCCTCTGGGGATGTGGCCATGATGCTGGCCAGGTTATCTTTGGATTAATATTTCTACTACTGAAGGACCGGCTCCATATTGAAGTTATTCGAACTTGGGGCACAAGAGTTGTTGGGCTTACTTTACTAGTTATTGGAGCTATGGGCATTAAGGAAGCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tcp11

Protein Analysis

1331

Amino Acids

148.14

Weight (kDa)

9.54

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tcp11 PF05794 677 - 1165 1.4e-72 T-complex protein 11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 2644, 3155, 3616
AccB7I CCANNNNNTGG 1 cut(s) 1519
AccBSI CCGCTC 2 cut(s) 3130, 3347
AccII CGCG 2 cut(s) 555, 582
AciI CCGC 9 cut(s) 70, 166, 349, 1277, 1977, 3130, 3347, 3416, 3808
AclI AACGTT 1 cut(s) 3237
AclWI GGATC 6 cut(s) 723, 1996, 2201, 2335, 3290, 3303
AcoI YGGCCR 5 cut(s) 33, 1314, 2406, 3847, 3859
AcsI RAATTY 5 cut(s) 790, 1331, 2226, 2824, 3012
AcuI CTGAAG 8 cut(s) 983, 1191, 1417, 1572, 2600, 2970, 3468, 3914
AfaI GTAC 5 cut(s) 545, 609, 2603, 2865, 3805
AfiI CCNNNNNNNGG 5 cut(s) 1131, 1143, 1519, 1891, 2005
AflII CTTAAG 1 cut(s) 1684
AgeI ACCGGT 2 cut(s) 729, 3725
AhdI GACNNNNNGTC 1 cut(s) 3660
AhlI ACTAGT 1 cut(s) 3958
AjnI CCWGG 8 cut(s) 168, 641, 2055, 2169, 2316, 2331, 3696, 3861
AjuI GAANNNNNNNTTGG 4 cut(s) 129, 161, 514, 546
AleI CACNNNNGTG 2 cut(s) 687, 1686
Alw21I GWGCWC 3 cut(s) 1472, 3524, 3823
Alw26I GTCTC 7 cut(s) 57, 682, 742, 859, 1051, 1298, 2769
Alw44I GTGCAC 1 cut(s) 3520
AlwI GGATC 6 cut(s) 723, 1996, 2201, 2335, 3290, 3303
AlwNI CAGNNNCTG 3 cut(s) 590, 3671, 3764
ApaI GGGCCC 2 cut(s) 1379, 2589
ApaLI GTGCAC 1 cut(s) 3520
ApoI RAATTY 5 cut(s) 790, 1331, 2226, 2824, 3012
AseI ATTAAT 1 cut(s) 3878
AsiGI ACCGGT 2 cut(s) 729, 3725
Asp700I GAANNNNTTC 4 cut(s) 1905, 1955, 2138, 3918
AspLEI GCGC 5 cut(s) 327, 555, 584, 1250, 3577
AsuC2I CCSGG 4 cut(s) 9, 32, 202, 3265
AsuHPI GGTGA 9 cut(s) 50, 674, 978, 1091, 1369, 2227, 2914, 2938, 3091
AsuII TTCGAA 1 cut(s) 3922
BaeGI GKGCMC 4 cut(s) 1379, 2589, 3524, 3935
BalI TGGCCA 4 cut(s) 1316, 2408, 3849, 3861
BamHI GGATCC 1 cut(s) 3295
BanII GRGCYC 4 cut(s) 1379, 2181, 2589, 3835
BarI GAAGNNNNNNTAC 2 cut(s) 620, 652
BbsI GAAGAC 6 cut(s) 252, 732, 1367, 1656, 2832, 3694
Bbv12I GWGCWC 3 cut(s) 1472, 3524, 3823
BccI CCATC 8 cut(s) 520, 1546, 1780, 2141, 2398, 3212, 3247, 3560
BceAI ACGGC 2 cut(s) 31, 940
BcgI CGANNNNNNTGC 2 cut(s) 950, 984
BciT130I CCWGG 8 cut(s) 170, 643, 2057, 2171, 2318, 2333, 3698, 3863
BclI TGATCA 1 cut(s) 2490
BcnI CCSGG 4 cut(s) 9, 32, 202, 3265
BcoDI GTCTC 7 cut(s) 57, 682, 742, 859, 1051, 1298, 2769
BcuI ACTAGT 1 cut(s) 3958
BfmI CTRYAG 2 cut(s) 1056, 1323
BfrI CTTAAG 1 cut(s) 1684
BfuAI ACCTGC 3 cut(s) 2644, 3155, 3616
BglII AGATCT 1 cut(s) 1436
BlpI GCTNAGC 1 cut(s) 328
BmeRI GACNNNNNGTC 1 cut(s) 3660
BmrI ACTGGG 2 cut(s) 1507, 3570
BmsI GCATC 9 cut(s) 256, 807, 1264, 1498, 2635, 3110, 3117, 3151, 3844
BmuI ACTGGG 2 cut(s) 1507, 3570
BpiI GAAGAC 6 cut(s) 252, 732, 1367, 1656, 2832, 3694
BplI GAGNNNNNCTC 2 cut(s) 490, 522
BpmI CTGGAG 1 cut(s) 2399
Bpu10I CCTNAGC 1 cut(s) 2473
Bpu1102I GCTNAGC 1 cut(s) 328
Bpu14I TTCGAA 1 cut(s) 3922
BpuEI CTTGAG 6 cut(s) 222, 446, 752, 950, 1049, 1498
BpuMI CCSGG 4 cut(s) 9, 32, 202, 3265
BsaAI YACGTR 1 cut(s) 2555
BsaBI GATNNNNATC 1 cut(s) 2091
BsaJI CCNNGG 6 cut(s) 7, 250, 1142, 2235, 2332, 2854
BsaWI WCCGGW 4 cut(s) 729, 2190, 2869, 3725
Bsc4I CCNNNNNNNGG 5 cut(s) 1131, 1143, 1519, 1891, 2005
Bse118I RCCGGY 7 cut(s) 35, 729, 2005, 3054, 3622, 3725, 3900
Bse3DI GCAATG 1 cut(s) 2481
Bse8I GATNNNNATC 1 cut(s) 2091
BseBI CCWGG 8 cut(s) 170, 643, 2057, 2171, 2318, 2333, 3698, 3863
BseDI CCNNGG 6 cut(s) 7, 250, 1142, 2235, 2332, 2854
BseJI GATNNNNATC 1 cut(s) 2091
BseLI CCNNNNNNNGG 5 cut(s) 1131, 1143, 1519, 1891, 2005
BseMI GCAATG 1 cut(s) 2481
BseRI GAGGAG 3 cut(s) 45, 2225, 3357
BseSI GKGCMC 4 cut(s) 1379, 2589, 3524, 3935
BseX3I CGGCCG 1 cut(s) 33
BseYI CCCAGC 2 cut(s) 1697, 3290
BsgI GTGCAG 2 cut(s) 3023, 3378
Bsh1236I CGCG 2 cut(s) 555, 582
Bsh1285I CGRYCG 2 cut(s) 36, 2626
BshTI ACCGGT 2 cut(s) 729, 3725
BsiEI CGRYCG 2 cut(s) 36, 2626
BsiHKAI GWGCWC 3 cut(s) 1472, 3524, 3823
BslFI GGGAC 1 cut(s) 2471
BslI CCNNNNNNNGG 5 cut(s) 1131, 1143, 1519, 1891, 2005
BsmAI GTCTC 7 cut(s) 57, 682, 742, 859, 1051, 1298, 2769
BsmBI CGTCTC 2 cut(s) 57, 859
BsmFI GGGAC 1 cut(s) 2471
BsmI GAATGC 3 cut(s) 456, 2879, 3042
Bsp119I TTCGAA 1 cut(s) 3922
Bsp120I GGGCCC 2 cut(s) 1375, 2585
Bsp1286I GDGCHC 8 cut(s) 1379, 1472, 2181, 2589, 3524, 3823, 3835, 3935
Bsp1407I TGTACA 1 cut(s) 2863
Bsp1720I GCTNAGC 1 cut(s) 328
Bsp19I CCATGG 1 cut(s) 2235
BspACI CCGC 9 cut(s) 70, 166, 349, 1277, 1977, 3130, 3347, 3416, 3808
BspFNI CGCG 2 cut(s) 555, 582
BspHI TCATGA 2 cut(s) 1615, 2767
BspMAI CTGCAG 1 cut(s) 1327
BspMI ACCTGC 3 cut(s) 2644, 3155, 3616
BspPI GGATC 6 cut(s) 723, 1996, 2201, 2335, 3290, 3303
BspQI GCTCTTC 1 cut(s) 2169
BspT104I TTCGAA 1 cut(s) 3922
BspTI CTTAAG 1 cut(s) 1684
BsrBI CCGCTC 2 cut(s) 3130, 3347
BsrDI GCAATG 1 cut(s) 2481
BsrFI RCCGGY 7 cut(s) 35, 729, 2005, 3054, 3622, 3725, 3900
BsrGI TGTACA 1 cut(s) 2863
BssAI RCCGGY 7 cut(s) 35, 729, 2005, 3054, 3622, 3725, 3900
BssECI CCNNGG 6 cut(s) 7, 250, 1142, 2235, 2332, 2854
BssT1I CCWWGG 4 cut(s) 250, 1142, 2235, 2854
Bst2UI CCWGG 8 cut(s) 170, 643, 2057, 2171, 2318, 2333, 3698, 3863
Bst6I CTCTTC 7 cut(s) 615, 623, 1186, 1392, 1850, 2169, 2946
BstAFI CTTAAG 1 cut(s) 1684
BstAPI GCANNNNNTGC 1 cut(s) 3572
BstAUI TGTACA 1 cut(s) 2863
BstBAI YACGTR 1 cut(s) 2555
BstBI TTCGAA 1 cut(s) 3922
BstDSI CCRYGG 1 cut(s) 2235
BstEII GGTNACC 1 cut(s) 2312
BstENI CCTNNNNNAGG 1 cut(s) 1889
BstFNI CGCG 2 cut(s) 555, 582
BstHHI GCGC 5 cut(s) 327, 555, 584, 1250, 3577
BstMAI GTCTC 7 cut(s) 57, 682, 742, 859, 1051, 1298, 2769
BstMCI CGRYCG 2 cut(s) 36, 2626
BstNI CCWGG 8 cut(s) 170, 643, 2057, 2171, 2318, 2333, 3698, 3863
BstNSI RCATGY 1 cut(s) 3498
BstPI GGTNACC 1 cut(s) 2312
BstSFI CTRYAG 2 cut(s) 1056, 1323
BstSLI GKGCMC 4 cut(s) 1379, 2589, 3524, 3935
BstUI CGCG 2 cut(s) 555, 582
BstV2I GAAGAC 6 cut(s) 252, 732, 1367, 1656, 2832, 3694
BstX2I RGATCY 4 cut(s) 1436, 1988, 2340, 3295
BstXI CCANNNNNNTGG 3 cut(s) 2250, 3100, 3857
BstYI RGATCY 4 cut(s) 1436, 1988, 2340, 3295
BstZI CGGCCG 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 2235
BtgZI GCGATG 2 cut(s) 1398, 2817
BtsI GCAGTG 1 cut(s) 2758
BveI ACCTGC 3 cut(s) 2644, 3155, 3616
CaiI CAGNNNCTG 3 cut(s) 590, 3671, 3764
CciI TCATGA 2 cut(s) 1615, 2767
CfoI GCGC 5 cut(s) 327, 555, 584, 1250, 3577
Cfr10I RCCGGY 7 cut(s) 35, 729, 2005, 3054, 3622, 3725, 3900
CseI GACGC 1 cut(s) 931
Csp6I GTAC 5 cut(s) 544, 608, 2602, 2864, 3804
CspAI ACCGGT 2 cut(s) 729, 3725
CspCI CAANNNNNGTGG 2 cut(s) 2262, 2297
CviAII CATG 9 cut(s) 1255, 1616, 2045, 2236, 2768, 3100, 3495, 3720, 3851
CviQI GTAC 5 cut(s) 544, 608, 2602, 2864, 3804
DriI GACNNNNNGTC 1 cut(s) 3660
EaeI YGGCCR 5 cut(s) 33, 1314, 2406, 3847, 3859
EagI CGGCCG 1 cut(s) 33
Eam1104I CTCTTC 7 cut(s) 615, 623, 1186, 1392, 1850, 2169, 2946
Eam1105I GACNNNNNGTC 1 cut(s) 3660
EarI CTCTTC 7 cut(s) 615, 623, 1186, 1392, 1850, 2169, 2946
EclXI CGGCCG 1 cut(s) 33
Eco130I CCWWGG 4 cut(s) 250, 1142, 2235, 2854
Eco24I GRGCYC 4 cut(s) 1379, 2181, 2589, 3835
Eco52I CGGCCG 1 cut(s) 33
Eco57I CTGAAG 8 cut(s) 983, 1191, 1417, 1572, 2600, 2970, 3468, 3914
Eco91I GGTNACC 1 cut(s) 2312
EcoNI CCTNNNNNAGG 1 cut(s) 1889
EcoO109I RGGNCCY 5 cut(s) 1375, 1376, 2585, 2956, 3761
EcoO65I GGTNACC 1 cut(s) 2312
EcoRI GAATTC 1 cut(s) 790
EcoRII CCWGG 8 cut(s) 168, 641, 2055, 2169, 2316, 2331, 3696, 3861
EcoT14I CCWWGG 4 cut(s) 250, 1142, 2235, 2854
EcoT22I ATGCAT 1 cut(s) 3125
EcoT38I GRGCYC 4 cut(s) 1379, 2181, 2589, 3835
ErhI CCWWGG 4 cut(s) 250, 1142, 2235, 2854
Esp3I CGTCTC 2 cut(s) 57, 859
FaeI CATG 9 cut(s) 1258, 1619, 2048, 2239, 2771, 3103, 3498, 3723, 3854
FalI AAGNNNNNCTT 2 cut(s) 1135, 1167
FaqI GGGAC 1 cut(s) 2471
FatI CATG 9 cut(s) 1254, 1615, 2044, 2235, 2767, 3099, 3494, 3719, 3850
FauI CCCGC 3 cut(s) 77, 1970, 3815
FbaI TGATCA 1 cut(s) 2490
FriOI GRGCYC 4 cut(s) 1379, 2181, 2589, 3835
GlaI GCGC 5 cut(s) 326, 554, 583, 1249, 3576
GsaI CCCAGC 2 cut(s) 1701, 3294
GsuI CTGGAG 1 cut(s) 2399
HgaI GACGC 1 cut(s) 931
HhaI GCGC 5 cut(s) 327, 555, 584, 1250, 3577
Hin1II CATG 9 cut(s) 1258, 1619, 2048, 2239, 2771, 3103, 3498, 3723, 3854
Hin6I GCGC 5 cut(s) 325, 553, 582, 1248, 3575
HinP1I GCGC 5 cut(s) 325, 553, 582, 1248, 3575
HincII GTYRAC 2 cut(s) 1384, 1929
HindII GTYRAC 2 cut(s) 1384, 1929
HindIII AAGCTT 5 cut(s) 143, 401, 909, 2806, 3987
HphI GGTGA 9 cut(s) 50, 674, 978, 1091, 1369, 2227, 2914, 2938, 3091
Hpy166II GTNNAC 7 cut(s) 1384, 1929, 2167, 3226, 3365, 3487, 3522
Hpy8I GTNNAC 7 cut(s) 1384, 1929, 2167, 3226, 3365, 3487, 3522
Hpy99I CGWCG 1 cut(s) 52
HpyCH4IV ACGT 7 cut(s) 424, 647, 688, 893, 2536, 2554, 3237
HpySE526I ACGT 7 cut(s) 424, 647, 688, 893, 2536, 2554, 3237
Hsp92II CATG 9 cut(s) 1258, 1619, 2048, 2239, 2771, 3103, 3498, 3723, 3854
HspAI GCGC 5 cut(s) 325, 553, 582, 1248, 3575
KroI GCCGGC 1 cut(s) 3054
KroNI GCCGGC 1 cut(s) 3056
Ksp22I TGATCA 1 cut(s) 2490
LguI GCTCTTC 1 cut(s) 2169
LweI GCATC 9 cut(s) 256, 807, 1264, 1498, 2635, 3110, 3117, 3151, 3844
MaeII ACGT 7 cut(s) 424, 647, 688, 893, 2536, 2554, 3237
MaeIII GTNAC 4 cut(s) 2008, 2312, 2359, 2665
MbiI CCGCTC 2 cut(s) 3130, 3347
MfeI CAATTG 2 cut(s) 2274, 3795
MflI RGATCY 4 cut(s) 1436, 1988, 2340, 3295
MhlI GDGCHC 8 cut(s) 1379, 1472, 2181, 2589, 3524, 3823, 3835, 3935
MlsI TGGCCA 4 cut(s) 1316, 2408, 3849, 3861
MluNI TGGCCA 4 cut(s) 1316, 2408, 3849, 3861
MlyI GAGTC 6 cut(s) 106, 144, 1273, 1409, 1934, 3684
Mox20I TGGCCA 4 cut(s) 1316, 2408, 3849, 3861
Mph1103I ATGCAT 1 cut(s) 3125
MroNI GCCGGC 1 cut(s) 3054
MroXI GAANNNNTTC 4 cut(s) 1905, 1955, 2138, 3918
MscI TGGCCA 4 cut(s) 1316, 2408, 3849, 3861
MslI CAYNNNNRTG 6 cut(s) 687, 1272, 1686, 2486, 2689, 3098
Msp20I TGGCCA 4 cut(s) 1316, 2408, 3849, 3861
MspA1I CMGCKG 3 cut(s) 587, 3416, 3668
MspCI CTTAAG 1 cut(s) 1684
MunI CAATTG 2 cut(s) 2274, 3795
Mva1269I GAATGC 3 cut(s) 456, 2879, 3042
MvaI CCWGG 8 cut(s) 170, 643, 2057, 2171, 2318, 2333, 3698, 3863
MvnI CGCG 2 cut(s) 555, 582
NaeI GCCGGC 1 cut(s) 3056
NciI CCSGG 4 cut(s) 9, 32, 202, 3265
NcoI CCATGG 1 cut(s) 2235
NgoMIV GCCGGC 1 cut(s) 3054
NlaIII CATG 9 cut(s) 1258, 1619, 2048, 2239, 2771, 3103, 3498, 3723, 3854
NmeAIII GCCGAG 1 cut(s) 2889
NmuCI GTSAC 3 cut(s) 2008, 2359, 2665
NsiI ATGCAT 1 cut(s) 3125
NspI RCATGY 1 cut(s) 3498
NspV TTCGAA 1 cut(s) 3922
OliI CACNNNNGTG 2 cut(s) 687, 1686
PagI TCATGA 2 cut(s) 1615, 2767
PciSI GCTCTTC 1 cut(s) 2169
PcsI WCGNNNNNNNCGW 1 cut(s) 1876
PctI GAATGC 3 cut(s) 456, 2879, 3042
PdiI GCCGGC 1 cut(s) 3056
PdmI GAANNNNTTC 4 cut(s) 1905, 1955, 2138, 3918
PfeI GAWTC 8 cut(s) 983, 1033, 1406, 1567, 1901, 2159, 2521, 3185
PflMI CCANNNNNTGG 1 cut(s) 1519
PinAI ACCGGT 2 cut(s) 729, 3725
Ple19I CGATCG 1 cut(s) 2626
PleI GAGTC 6 cut(s) 106, 144, 1272, 1408, 1933, 3684
PpsI GAGTC 6 cut(s) 106, 144, 1272, 1408, 1933, 3684
Ppu21I YACGTR 1 cut(s) 2555
PshBI ATTAAT 1 cut(s) 3878
Psp1406I AACGTT 1 cut(s) 3237
Psp6I CCWGG 8 cut(s) 168, 641, 2055, 2169, 2316, 2331, 3696, 3861
PspEI GGTNACC 1 cut(s) 2312
PspFI CCCAGC 2 cut(s) 1697, 3290
PspGI CCWGG 8 cut(s) 168, 641, 2055, 2169, 2316, 2331, 3696, 3861
PspOMI GGGCCC 2 cut(s) 1375, 2585
PstI CTGCAG 1 cut(s) 1327
PstNI CAGNNNCTG 3 cut(s) 590, 3671, 3764
PsuI RGATCY 4 cut(s) 1436, 1988, 2340, 3295
PvuI CGATCG 1 cut(s) 2626
PvuII CAGCTG 2 cut(s) 587, 3668
RsaI GTAC 5 cut(s) 545, 609, 2603, 2865, 3805
RsaNI GTAC 5 cut(s) 544, 608, 2602, 2864, 3804
RseI CAYNNNNRTG 6 cut(s) 687, 1272, 1686, 2486, 2689, 3098
SapI GCTCTTC 1 cut(s) 2169
SchI GAGTC 6 cut(s) 106, 144, 1273, 1409, 1934, 3684
SduI GDGCHC 8 cut(s) 1379, 1472, 2181, 2589, 3524, 3823, 3835, 3935
SfaNI GCATC 9 cut(s) 256, 807, 1264, 1498, 2635, 3110, 3117, 3151, 3844
SfcI CTRYAG 2 cut(s) 1056, 1323
SfuI TTCGAA 1 cut(s) 3922
SmiMI CAYNNNNRTG 6 cut(s) 687, 1272, 1686, 2486, 2689, 3098
SmlI CTYRAG 7 cut(s) 237, 461, 767, 929, 1028, 1477, 1684
SmoI CTYRAG 7 cut(s) 237, 461, 767, 929, 1028, 1477, 1684
SpeI ACTAGT 1 cut(s) 3958
SsiI CCGC 9 cut(s) 70, 166, 349, 1277, 1977, 3130, 3347, 3416, 3808
SspI AATATT 2 cut(s) 2071, 3882
StyI CCWWGG 4 cut(s) 250, 1142, 2235, 2854
TaiI ACGT 7 cut(s) 427, 650, 691, 896, 2539, 2557, 3240
TaqI TCGA 8 cut(s) 90, 126, 148, 226, 960, 1024, 2738, 3922
TaqII GACCGA 1 cut(s) 3231
TatI WGTACW 2 cut(s) 543, 2863
TauI GCSGC 3 cut(s) 168, 352, 3133
TfiI GAWTC 8 cut(s) 983, 1033, 1406, 1567, 1901, 2159, 2521, 3185
TseFI GTSAC 3 cut(s) 2008, 2359, 2665
Tsp45I GTSAC 3 cut(s) 2008, 2359, 2665
TspGWI ACGGA 4 cut(s) 97, 1065, 2677, 3504
Van91I CCANNNNNTGG 1 cut(s) 1519
Vha464I CTTAAG 1 cut(s) 1684
VneI GTGCAC 1 cut(s) 3520
VspI ATTAAT 1 cut(s) 3878
XagI CCTNNNNNAGG 1 cut(s) 1889
XapI RAATTY 5 cut(s) 790, 1331, 2226, 2824, 3012
XbaI TCTAGA 4 cut(s) 842, 2512, 2843, 2987
XceI RCATGY 1 cut(s) 3498
XcmI CCANNNNNNNNNTGG 1 cut(s) 3869
XmnI GAANNNNTTC 4 cut(s) 1905, 1955, 2138, 3918
Zsp2I ATGCAT 1 cut(s) 3125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.