Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001924

Physical Location & Seq

Genomic Coordinates Reverse (-)

30691234 .. 30691939

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1241100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAACTCCTACGTAAATGTCTTATTGTATCAGCTTCTGCTAATAAAAAGCTCATGGATTCTGCCGCCCATCTTGCACGGCTGACAGGGGACAGCTTCCTAGTGGGAAAACTGCACAAACTCTCTTCGTTTGTTTCATCAAATTCGGATGGTACTGAAGAAGAAGCTGTTCGTATAAACTCAACTGATCAATTTAAGAAGCAAGAAGAATCTATAAGTCATGCGGCAGAGAAGCTAGAGCTGATTAAGCGTCGCATAAGGAAGAGCAAAGCAGTTAAGACCGCAGATGATGATGTCCGAAACACTAACAGATGGGTTCTGGCAAAATCATGGAACCCGTGTCCAATAGGAATGTTGCCTCGAGCTGTAGGGCCTTCCGGCTGCCTTCCTGTTCTGGACGTTAACAATGTCCCGGAAAAGGTTCCTGAAGTACTAGGAAGAAAAGAGTTGTGGGAGTTGAACCAATGCAGCTTCAAGAGACCTAGTTCCGAAATGCAGCTACTAGATAACCCATGTGTTAAGAAGATGAGGGCGACATCGGAAGGTGAGGATGTTCTATCACCAGAAGATGTCGACGGACATCTCATGATAGGCGGGGCGTGGAAGAAAGTCGGGGAAGAGGAGCTACTTGCCATCAAGTCTGCTGTGAGGATGTTAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Las1

Protein Analysis

221

Amino Acids

24.4

Weight (kDa)

8.55

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12220 AT5G12220
fragaria_vesca	FvH4_5g29960 FvH4_5g29960 FvH4_5g29960 FvH4_5g29960 FvH4_5g29960
malus_domestica	MD08G1241100.v1.1 MD08G1241200.v1.1 MD15G1434100.v1.1
prunus_persica	Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1
pyrus_communis	pycom08g20900 pycom15g38330
rosa_chinensis	RchiOBHm_Chr7g0223811
rosa_laevigata	RLG00000001928
rosa_multiflora	Rmu_co8292895.1_g000001 Rmu_sc0010556.1_g000019
rosa_roxburghii	Rroxscaffold_3G00235270 Rroxscaffold_3G00240380
rosa_rugosa	Rorug07G0220600
rosa_samantha	Rh7AG325200 Rh7AG325300 Rh7AG363300 Rh7BG354200 Rh7CG342000 Rh7CG342100 Rh7CG381700 Rh7DG358000
rosa_wichuraiana	Rw7G030840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	573
AciI	CCGC	4 cut(s)	66, 224, 282, 594
AcsI	RAATTY	1 cut(s)	142
AcuI	CTGAAG	2 cut(s)	177, 447
AfaI	GTAC	2 cut(s)	154, 432
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	2 cut(s)	460, 475
Alw26I	GTCTC	1 cut(s)	472
AlwNI	CAGNNNCTG	1 cut(s)	38
Ama87I	CYCGRG	1 cut(s)	360
AoxI	GGCC	1 cut(s)	371
ApeKI	GCWGC	3 cut(s)	381, 468, 496
ApoI	RAATTY	1 cut(s)	142
Asp700I	GAANNNNTTC	2 cut(s)	168, 420
AspS9I	GGNCC	1 cut(s)	371
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	552, 557
AvaI	CYCGRG	1 cut(s)	360
BarI	GAAGNNNNNNTAC	2 cut(s)	609, 641
BbvI	GCAGC	3 cut(s)	368, 480, 508
BccI	CCATC	4 cut(s)	78, 143, 306, 641
BceAI	ACGGC	1 cut(s)	95
BclI	TGATCA	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	472
BfaI	CTAG	6 cut(s)	101, 236, 434, 483, 503, 661
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	5 cut(s)	66, 225, 382, 469, 497
BlsI	GCNGC	5 cut(s)	67, 226, 383, 470, 498
BmcAI	AGTACT	1 cut(s)	432
Bme1390I	CCNGG	1 cut(s)	413
BmeT110I	CYCGRG	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	335, 423
BmrFI	CCNGG	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	413
BsaAI	YACGTR	1 cut(s)	14
BsaBI	GATNNNNATC	1 cut(s)	656
BsaI	GGTCTC	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse8I	GATNNNNATC	1 cut(s)	656
BseGI	GGATG	3 cut(s)	154, 556, 657
BseJI	GATNNNNATC	1 cut(s)	656
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseRI	GAGGAG	1 cut(s)	635
BseXI	GCAGC	3 cut(s)	368, 480, 508
BsgI	GTGCAG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	360
BsiSI	CCGG	2 cut(s)	378, 413
BslFI	GGGAC	2 cut(s)	104, 395
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmAI	GTCTC	1 cut(s)	472
BsmFI	GGGAC	2 cut(s)	104, 395
BsnI	GGCC	1 cut(s)	373
Bso31I	GGTCTC	1 cut(s)	472
BsoBI	CYCGRG	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	4 cut(s)	66, 224, 282, 594
BspANI	GGCC	1 cut(s)	373
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	2 cut(s)	335, 423
BspQI	GCTCTTC	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	472
BssMI	GATC	1 cut(s)	187
Bst6I	CTCTTC	3 cut(s)	130, 257, 612
BstBAI	YACGTR	1 cut(s)	14
BstF5I	GGATG	3 cut(s)	154, 556, 657
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	1 cut(s)	472
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 247
BstSCI	CCNGG	1 cut(s)	411
BstSFI	CTRYAG	1 cut(s)	366
BstSNI	TACGTA	1 cut(s)	14
BstV1I	GCAGC	3 cut(s)	368, 480, 508
BsuRI	GGCC	1 cut(s)	373
BtsCI	GGATG	3 cut(s)	154, 556, 657
CaiI	CAGNNNCTG	1 cut(s)	38
CciI	TCATGA	1 cut(s)	585
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	153, 431
CviAII	CATG	5 cut(s)	55, 221, 330, 513, 586
CviQI	GTAC	2 cut(s)	153, 431
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eam1104I	CTCTTC	3 cut(s)	130, 257, 612
EarI	CTCTTC	3 cut(s)	130, 257, 612
Eco105I	TACGTA	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	472
Eco57I	CTGAAG	2 cut(s)	177, 447
Eco88I	CYCGRG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	371
FaeI	CATG	5 cut(s)	58, 224, 333, 516, 589
FaiI	YATR	8 cut(s)	56, 176, 215, 222, 257, 331, 514, 587
FaqI	GGGAC	2 cut(s)	104, 395
FatI	CATG	5 cut(s)	54, 220, 329, 512, 585
FauI	CCCGC	1 cut(s)	587
FbaI	TGATCA	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	5 cut(s)	66, 225, 382, 469, 497
FokI	GGATG	2 cut(s)	161, 563
Fsp4HI	GCNGC	5 cut(s)	66, 225, 382, 469, 497
FspBI	CTAG	6 cut(s)	101, 236, 434, 483, 503, 661
GluI	GCNGC	5 cut(s)	66, 225, 382, 469, 497
HaeIII	GGCC	1 cut(s)	373
HapII	CCGG	2 cut(s)	378, 413
HgaI	GACGC	1 cut(s)	239
Hin1II	CATG	5 cut(s)	58, 224, 333, 516, 589
HincII	GTYRAC	2 cut(s)	403, 574
HindII	GTYRAC	2 cut(s)	403, 574
HinfI	GANTC	2 cut(s)	59, 209
HpaI	GTTAAC	1 cut(s)	403
HpaII	CCGG	2 cut(s)	378, 413
HphI	GGTGA	2 cut(s)	552, 557
Hpy166II	GTNNAC	2 cut(s)	403, 574
Hpy188I	TCNGA	4 cut(s)	148, 299, 490, 541
Hpy188III	TCNNGA	4 cut(s)	395, 425, 475, 586
Hpy8I	GTNNAC	2 cut(s)	403, 574
Hpy99I	CGWCG	2 cut(s)	255, 578
HpyAV	CCTTC	3 cut(s)	384, 395, 536
HpyCH4IV	ACGT	2 cut(s)	13, 399
HpyCH4V	TGCA	4 cut(s)	77, 115, 468, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 247
HpySE526I	ACGT	2 cut(s)	13, 399
Hsp92II	CATG	5 cut(s)	58, 224, 333, 516, 589
Ksp22I	TGATCA	1 cut(s)	187
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	187
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	1 cut(s)	622
LpnPI	CCDG	8 cut(s)	72, 305, 380, 391, 402, 426, 438, 576
Lsp1109I	GCAGC	3 cut(s)	368, 480, 508
MaeI	CTAG	6 cut(s)	101, 236, 434, 483, 503, 661
MaeII	ACGT	2 cut(s)	13, 399
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MluCI	AATT	2 cut(s)	142, 191
MnlI	CCTC	5 cut(s)	369, 522, 541, 613, 642
MroXI	GAANNNNTTC	2 cut(s)	168, 420
MseI	TTAA	6 cut(s)	195, 246, 276, 402, 519, 656
MspI	CCGG	2 cut(s)	378, 413
MspR9I	CCNGG	1 cut(s)	413
MwoI	GCNNNNNNNGC	2 cut(s)	74, 247
NciI	CCSGG	1 cut(s)	413
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	5 cut(s)	58, 224, 333, 516, 589
NlaIV	GGNNCC	2 cut(s)	335, 423
PaeR7I	CTCGAG	1 cut(s)	360
PagI	TCATGA	1 cut(s)	585
PciSI	GCTCTTC	1 cut(s)	257
PdmI	GAANNNNTTC	2 cut(s)	168, 420
PfeI	GAWTC	2 cut(s)	59, 209
PfoI	TCCNGGA	1 cut(s)	411
PkrI	GCNGC	5 cut(s)	67, 226, 383, 470, 498
Ppu21I	YACGTR	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	335, 423
PspPI	GGNCC	1 cut(s)	371
PspXI	VCTCGAGB	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	38
RsaI	GTAC	2 cut(s)	154, 432
RsaNI	GTAC	2 cut(s)	153, 431
SalI	GTCGAC	1 cut(s)	572
SapI	GCTCTTC	1 cut(s)	257
SaqAI	TTAA	6 cut(s)	195, 246, 276, 402, 519, 656
SatI	GCNGC	5 cut(s)	66, 225, 382, 469, 497
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	371
ScaI	AGTACT	1 cut(s)	432
ScrFI	CCNGG	1 cut(s)	413
SfcI	CTRYAG	1 cut(s)	366
Sfr274I	CTCGAG	1 cut(s)	360
SlaI	CTCGAG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
SnaBI	TACGTA	1 cut(s)	14
Sse9I	AATT	2 cut(s)	142, 191
SsiI	CCGC	4 cut(s)	66, 224, 282, 594
SspMI	CTAG	6 cut(s)	101, 236, 434, 483, 503, 661
StyD4I	CCNGG	1 cut(s)	411
TaiI	ACGT	2 cut(s)	16, 402
TaqI	TCGA	2 cut(s)	361, 573
TasI	AATT	2 cut(s)	142, 191
TatI	WGTACW	1 cut(s)	430
TauI	GCSGC	2 cut(s)	68, 227
TfiI	GAWTC	2 cut(s)	59, 209
Tru1I	TTAA	6 cut(s)	195, 246, 276, 402, 519, 656
Tru9I	TTAA	6 cut(s)	195, 246, 276, 402, 519, 656
TseI	GCWGC	3 cut(s)	381, 468, 496
TspDTI	ATGAA	1 cut(s)	126
TspGWI	ACGGA	1 cut(s)	591
XapI	RAATTY	1 cut(s)	142
XhoI	CTCGAG	1 cut(s)	360
XmiI	GTMKAC	1 cut(s)	573
XmnI	GAANNNNTTC	2 cut(s)	168, 420
XspI	CTAG	6 cut(s)	101, 236, 434, 483, 503, 661
ZrmI	AGTACT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.