Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8292895.1

Orthogroup ID

OG0001924

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 600

Gene Structure 599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8292895.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 599 bp

atgaattctgccctccatcttgcaaagcttacaggagacgactatctagtgcaaaaactcaacaaactctctttcttagtttcatcaaatttggatgctactgaagaaaacacttgtgttgcaagttcaaatagtatatttgtccagcaagaaaaatctataagtcaagcagcaaagaagcttgagttgattaaacgtcaccaaatgcagcgcaaagcagtgaagggaacaagagatgctgatgttggaggttctaaaagatgggttatggcaaaatcatggacccagtgtcctattggaatgttgccttgtgctgttgggtattccagctgtctgcctgttctggactataattgtgcatctgaaaaggatcctgaagaacttggaagaaatgagaagtgggaaccgaactcatatagtggcaagagacaagctagttctgatatgcagctacttgataacccatgtgttaagaagatgagggagactgtggtagatgattgtgtatcagataaggatgatgttgcatcctcagaatatgtcaatggccatctcatgatcggtggtgtctggaagaaagttggggaagaagaaatact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Las1

Protein Analysis

200

Amino Acids

22.19

Weight (kDa)

5.97

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12220 AT5G12220
fragaria_vesca	FvH4_5g29960 FvH4_5g29960 FvH4_5g29960 FvH4_5g29960 FvH4_5g29960
malus_domestica	MD08G1241100.v1.1 MD08G1241200.v1.1 MD15G1434100.v1.1
prunus_persica	Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1
pyrus_communis	pycom08g20900 pycom15g38330
rosa_chinensis	RchiOBHm_Chr7g0223811
rosa_laevigata	RLG00000001928
rosa_multiflora	Rmu_co8292895.1_g000001 Rmu_sc0010556.1_g000019
rosa_roxburghii	Rroxscaffold_3G00235270 Rroxscaffold_3G00240380
rosa_rugosa	Rorug07G0220600
rosa_samantha	Rh7AG325200 Rh7AG325300 Rh7AG363300 Rh7BG354200 Rh7CG342000 Rh7CG342100 Rh7CG381700 Rh7DG358000
rosa_wichuraiana	Rw7G030840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	365, 378
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	2 cut(s)	4, 88
AcuI	CTGAAG	2 cut(s)	123, 396
AgsI	TTSAA	1 cut(s)	129
AhdI	GACNNNNNGTC	1 cut(s)	288
AluBI	AGCT	5 cut(s)	28, 181, 330, 434, 451
AluI	AGCT	5 cut(s)	28, 181, 330, 434, 451
Alw26I	GTCTC	3 cut(s)	30, 421, 479
AlwI	GGATC	2 cut(s)	365, 378
AoxI	GGCC	1 cut(s)	547
ApeKI	GCWGC	3 cut(s)	170, 208, 448
ApoI	RAATTY	2 cut(s)	4, 88
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	282
BalI	TGGCCA	1 cut(s)	549
BamHI	GGATCC	1 cut(s)	370
BarI	GAAGNNNNNNTAC	1 cut(s)	579
BbvI	GCAGC	3 cut(s)	182, 220, 460
BccI	CCATC	3 cut(s)	24, 255, 558
BcoDI	GTCTC	3 cut(s)	30, 421, 479
BfaI	CTAG	2 cut(s)	47, 435
BisI	GCNGC	3 cut(s)	171, 209, 449
BlsI	GCNGC	3 cut(s)	172, 210, 450
Bme18I	GGWCC	1 cut(s)	282
BmeRI	GACNNNNNGTC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	3 cut(s)	284, 372, 405
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	4 cut(s)	85, 226, 368, 536
BmuI	ACTGGG	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	286
BseGI	GGATG	3 cut(s)	100, 523, 527
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	1 cut(s)	286
BseXI	GCAGC	3 cut(s)	182, 220, 460
BshFI	GGCC	1 cut(s)	549
BsmAI	GTCTC	3 cut(s)	30, 421, 479
BsmBI	CGTCTC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	549
Bsp143I	GATC	2 cut(s)	370, 558
BspANI	GGCC	1 cut(s)	549
BspCNI	CTCAG	1 cut(s)	545
BspHI	TCATGA	1 cut(s)	555
BspLI	GGNNCC	3 cut(s)	284, 372, 405
BspPI	GGATC	2 cut(s)	365, 378
BsrI	ACTGG	1 cut(s)	286
BssMI	GATC	2 cut(s)	370, 558
Bst4CI	ACNGT	1 cut(s)	490
BstDEI	CTNAG	2 cut(s)	76, 532
BstF5I	GGATG	3 cut(s)	100, 523, 527
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	2 cut(s)	373, 561
BstMAI	GTCTC	3 cut(s)	30, 421, 479
BstMBI	GATC	2 cut(s)	370, 558
BstV1I	GCAGC	3 cut(s)	182, 220, 460
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	549
BtsCI	GGATG	3 cut(s)	100, 523, 527
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	225, 293
CciI	TCATGA	1 cut(s)	555
CfoI	GCGC	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	282
CviAII	CATG	3 cut(s)	279, 465, 556
CviJI	RGCY	6 cut(s)	28, 181, 330, 434, 451, 549
CviKI_1	RGCY	6 cut(s)	28, 181, 330, 434, 451, 549
DdeI	CTNAG	2 cut(s)	76, 532
DpnI	GATC	2 cut(s)	372, 560
DpnII	GATC	2 cut(s)	370, 558
DriI	GACNNNNNGTC	1 cut(s)	288
EaeI	YGGCCR	1 cut(s)	547
Eam1105I	GACNNNNNGTC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	282
Eco57I	CTGAAG	2 cut(s)	123, 396
EcoRI	GAATTC	1 cut(s)	4
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	3 cut(s)	282, 468, 559
FatI	CATG	3 cut(s)	278, 464, 555
Fnu4HI	GCNGC	3 cut(s)	171, 209, 449
FokI	GGATG	3 cut(s)	107, 514, 530
Fsp4HI	GCNGC	3 cut(s)	171, 209, 449
FspBI	CTAG	2 cut(s)	47, 435
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	3 cut(s)	171, 209, 449
HaeIII	GGCC	1 cut(s)	549
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	3 cut(s)	282, 468, 559
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HindIII	AAGCTT	2 cut(s)	26, 179
HphI	GGTGA	1 cut(s)	191
Hpy188I	TCNGA	4 cut(s)	364, 442, 511, 535
Hpy188III	TCNNGA	4 cut(s)	344, 374, 556, 571
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	7 cut(s)	23, 52, 122, 208, 359, 448, 527
HpyF3I	CTNAG	2 cut(s)	76, 532
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	3 cut(s)	282, 468, 559
HspAI	GCGC	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	370, 558
LpnPI	CCDG	8 cut(s)	18, 158, 299, 329, 340, 351, 387, 556
Lsp1109I	GCAGC	3 cut(s)	182, 220, 460
LweI	GCATC	4 cut(s)	85, 226, 368, 536
MaeI	CTAG	2 cut(s)	47, 435
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	2 cut(s)	372, 560
MboI	GATC	2 cut(s)	370, 558
MboII	GAAGA	6 cut(s)	116, 389, 399, 487, 586, 599
MflI	RGATCY	1 cut(s)	370
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	3 cut(s)	4, 88, 352
MluNI	TGGCCA	1 cut(s)	549
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	4 cut(s)	23, 242, 474, 541
Mox20I	TGGCCA	1 cut(s)	549
MscI	TGGCCA	1 cut(s)	549
MseI	TTAA	2 cut(s)	192, 471
Msp20I	TGGCCA	1 cut(s)	549
MspA1I	CMGCKG	1 cut(s)	330
NdeII	GATC	2 cut(s)	370, 558
NlaIII	CATG	3 cut(s)	282, 468, 559
NlaIV	GGNNCC	3 cut(s)	284, 372, 405
NmuCI	GTSAC	1 cut(s)	197
PagI	TCATGA	1 cut(s)	555
PkrI	GCNGC	3 cut(s)	172, 210, 450
PspN4I	GGNNCC	3 cut(s)	284, 372, 405
PspPI	GGNCC	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	330
SaqAI	TTAA	2 cut(s)	192, 471
SatI	GCNGC	3 cut(s)	171, 209, 449
Sau3AI	GATC	2 cut(s)	370, 558
Sau96I	GGNCC	1 cut(s)	282
SetI	ASST	7 cut(s)	30, 183, 199, 253, 332, 436, 453
SfaNI	GCATC	4 cut(s)	85, 226, 368, 536
SinI	GGWCC	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	3 cut(s)	4, 88, 352
SspMI	CTAG	2 cut(s)	47, 435
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	1 cut(s)	199
TasI	AATT	3 cut(s)	4, 88, 352
Tru1I	TTAA	2 cut(s)	192, 471
Tru9I	TTAA	2 cut(s)	192, 471
TscAI	CASTG	2 cut(s)	225, 293
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	3 cut(s)	170, 208, 448
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	17, 72
TspRI	CASTG	2 cut(s)	225, 293
VpaK11BI	GGWCC	1 cut(s)	282
XapI	RAATTY	2 cut(s)	4, 88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	293
XspI	CTAG	2 cut(s)	47, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.