Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001924

Physical Location & Seq

Genomic Coordinates Forward (+)

32062438 .. 32064214

Gene Structure 1777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATCAGAGAAAGTGAAGCAGAGCGTGTTGTTTGGATTTTCGAATATATAAGATACATGAAGCGTACAATATACGCGCTTGTGAATTGCGTTGTTGAGAAGACACGCAAGAAAAATGAGGTTTCAATTGCTGAGGCTGCTGATGCATTTGGCATTCCACGATCACTGATTGATATTCGTCATGAGGGATCTCACCGTGAGCTTCCCACTCTTCAGGTTGTTCGAAGCGCTTCAATTAAGGCCCTTGATTGGTTGAAGTATTATTATTGGGAACCTCAGAAGAATGCAATTCCATTTCAAGGCACTGGAAGTGCTAACATCAGAAATGAAATAAACTCAAAGTTCCGTGAATTGGCTTCCTGCTTGAGAGCTAAAATGACTCCCCACTTGCGTTCTTCTCAAGTCAAAGAAAAACGTGGTACGATAATCTCTATGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Las1

Protein Analysis

146

Amino Acids

16.99

Weight (kDa)

9.76

Isoelectric Point (pI)

49.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Las1	PF04031	22 - 92	2.7e-20	Las1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12220 AT5G12220
fragaria_vesca	FvH4_5g29960 FvH4_5g29960 FvH4_5g29960 FvH4_5g29960 FvH4_5g29960
malus_domestica	MD08G1241100.v1.1 MD08G1241200.v1.1 MD15G1434100.v1.1
prunus_persica	Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1
pyrus_communis	pycom08g20900 pycom15g38330
rosa_chinensis	RchiOBHm_Chr7g0223811
rosa_laevigata	RLG00000001928
rosa_multiflora	Rmu_co8292895.1_g000001 Rmu_sc0010556.1_g000019
rosa_roxburghii	Rroxscaffold_3G00235270 Rroxscaffold_3G00240380
rosa_rugosa	Rorug07G0220600
rosa_samantha	Rh7AG325200 Rh7AG325300 Rh7AG363300 Rh7BG354200 Rh7CG342000 Rh7CG342100 Rh7CG381700 Rh7DG358000
rosa_wichuraiana	Rw7G030840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	77
AclWI	GGATC	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	2 cut(s)	67, 421
AfeI	AGCGCT	1 cut(s)	229
AfiI	CCNNNNNNNGG	3 cut(s)	249, 299, 352
AgsI	TTSAA	4 cut(s)	126, 234, 256, 299
AluBI	AGCT	2 cut(s)	202, 371
AluI	AGCT	2 cut(s)	202, 371
AlwI	GGATC	1 cut(s)	196
Aor51HI	AGCGCT	1 cut(s)	229
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	1 cut(s)	137
Asp700I	GAANNNNTTC	1 cut(s)	229
AspLEI	GCGC	2 cut(s)	79, 230
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	185
AsuII	TTCGAA	2 cut(s)	42, 223
BbsI	GAAGAC	1 cut(s)	107
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	124
BclI	TGATCA	1 cut(s)	3
BfoI	RGCGCY	1 cut(s)	231
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	273
BmsI	GCATC	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	132
Bpu14I	TTCGAA	2 cut(s)	42, 223
BpuEI	CTTGAG	2 cut(s)	384, 385
Bsc4I	CCNNNNNNNGG	3 cut(s)	249, 299, 352
Bse1I	ACTGG	1 cut(s)	310
BseLI	CCNNNNNNNGG	3 cut(s)	249, 299, 352
BseMII	CTCAG	2 cut(s)	123, 290
BseNI	ACTGG	1 cut(s)	310
BseXI	GCAGC	1 cut(s)	124
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	242
BslI	CCNNNNNNNGG	3 cut(s)	249, 299, 352
BsmI	GAATGC	2 cut(s)	153, 289
BsnI	GGCC	1 cut(s)	242
Bsp119I	TTCGAA	2 cut(s)	42, 223
Bsp143I	GATC	3 cut(s)	3, 161, 188
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	2 cut(s)	124, 289
BspFNI	CGCG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	196
BspT104I	TTCGAA	2 cut(s)	42, 223
BsrI	ACTGG	1 cut(s)	310
BssMI	GATC	3 cut(s)	3, 161, 188
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	216
BstBI	TTCGAA	2 cut(s)	42, 223
BstDEI	CTNAG	2 cut(s)	132, 276
BstFNI	CGCG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	2 cut(s)	79, 230
BstKTI	GATC	3 cut(s)	6, 164, 191
BstMBI	GATC	3 cut(s)	3, 161, 188
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 143
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	242
BtsIMutI	CAGTG	2 cut(s)	164, 303
CciI	TCATGA	1 cut(s)	181
CfoI	GCGC	2 cut(s)	79, 230
Cfr13I	GGNCC	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	66, 420
CviAII	CATG	2 cut(s)	58, 182
CviJI	RGCY	5 cut(s)	137, 202, 242, 356, 371
CviKI_1	RGCY	5 cut(s)	137, 202, 242, 356, 371
CviQI	GTAC	2 cut(s)	66, 420
DdeI	CTNAG	2 cut(s)	132, 276
DpnI	GATC	3 cut(s)	5, 163, 190
DpnII	GATC	3 cut(s)	3, 161, 188
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco47III	AGCGCT	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	148
FaeI	CATG	2 cut(s)	61, 185
FaiI	YATR	6 cut(s)	48, 50, 59, 73, 183, 434
FatI	CATG	2 cut(s)	57, 181
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	138
GlaI	GCGC	2 cut(s)	78, 229
GluI	GCNGC	1 cut(s)	138
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	242
HhaI	GCGC	2 cut(s)	79, 230
Hin1II	CATG	2 cut(s)	61, 185
Hin6I	GCGC	2 cut(s)	77, 228
HinP1I	GCGC	2 cut(s)	77, 228
HinfI	GANTC	1 cut(s)	379
HphI	GGTGA	1 cut(s)	185
Hpy188I	TCNGA	3 cut(s)	8, 279, 323
Hpy188III	TCNNGA	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	2 cut(s)	146, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 143
HpyF3I	CTNAG	2 cut(s)	132, 276
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	2 cut(s)	61, 185
HspAI	GCGC	2 cut(s)	77, 228
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 161, 188
LpnPI	CCDG	3 cut(s)	200, 291, 373
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	133
MaeII	ACGT	1 cut(s)	415
MalI	GATC	3 cut(s)	5, 163, 190
MboI	GATC	3 cut(s)	3, 161, 188
MboII	GAAGA	4 cut(s)	112, 203, 292, 387
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	1 cut(s)	188
MluCI	AATT	5 cut(s)	85, 126, 234, 288, 350
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	4 cut(s)	112, 127, 178, 285
Mph1103I	ATGCAT	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	229
MseI	TTAA	1 cut(s)	237
MunI	CAATTG	1 cut(s)	126
Mva1269I	GAATGC	2 cut(s)	153, 289
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	137, 143
NdeII	GATC	3 cut(s)	3, 161, 188
NlaIII	CATG	2 cut(s)	61, 185
NlaIV	GGNNCC	1 cut(s)	273
NsiI	ATGCAT	1 cut(s)	148
NspV	TTCGAA	2 cut(s)	42, 223
PagI	TCATGA	1 cut(s)	181
PctI	GAATGC	2 cut(s)	153, 289
PdmI	GAANNNNTTC	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	188
RsaI	GTAC	2 cut(s)	67, 421
RsaNI	GTAC	2 cut(s)	66, 420
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	3 cut(s)	3, 161, 188
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	1 cut(s)	373
SetI	ASST	6 cut(s)	123, 204, 219, 277, 373, 418
SfaNI	GCATC	1 cut(s)	133
SfuI	TTCGAA	2 cut(s)	42, 223
SmlI	CTYRAG	2 cut(s)	364, 399
SmoI	CTYRAG	2 cut(s)	364, 399
Sse9I	AATT	5 cut(s)	85, 126, 234, 288, 350
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	2 cut(s)	42, 223
TasI	AATT	5 cut(s)	85, 126, 234, 288, 350
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	2 cut(s)	171, 310
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	2 cut(s)	74, 342
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	2 cut(s)	171, 310
XmnI	GAANNNNTTC	1 cut(s)	229
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.