Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010556.1

Orthogroup ID

OG0001924

Physical Location & Seq

Genomic Coordinates Forward (+)

59465 .. 60096

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010556.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atggaggcgcttttagggtttatggaagaaccaggggattatgaccaggtagagacgacgtcgtcttcgtcttcgtacagccacaaattggtgccgtggttgagctgggacgagtggctcttcatatcggcatggagaagcagaggatgtgttcctgctgtgatcgaagttacagcttcaataatcgaaattcagcaaaaagatccttactttagaaaggacaagtcaaatgatgctgtggataattgccgagcagaccaatccagtgattcttcactttctgaggaaatgctggccatgctatattgcatggcaatcatgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Las1

Protein Analysis

108

Amino Acids

12.33

Weight (kDa)

4.36

Isoelectric Point (pI)

60.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12220 AT5G12220
fragaria_vesca	FvH4_5g29960 FvH4_5g29960 FvH4_5g29960 FvH4_5g29960 FvH4_5g29960
malus_domestica	MD08G1241100.v1.1 MD08G1241200.v1.1 MD15G1434100.v1.1
prunus_persica	Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1
pyrus_communis	pycom08g20900 pycom15g38330
rosa_chinensis	RchiOBHm_Chr7g0223811
rosa_laevigata	RLG00000001928
rosa_multiflora	Rmu_co8292895.1_g000001 Rmu_sc0010556.1_g000019
rosa_roxburghii	Rroxscaffold_3G00235270 Rroxscaffold_3G00240380
rosa_rugosa	Rorug07G0220600
rosa_samantha	Rh7AG325200 Rh7AG325300 Rh7AG363300 Rh7BG354200 Rh7CG342000 Rh7CG342100 Rh7CG381700 Rh7DG358000
rosa_wichuraiana	Rw7G030840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	61
AatII	GACGTC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	91
AccB7I	CCANNNNNTGG	1 cut(s)	88
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	189
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	180
AjnI	CCWGG	2 cut(s)	31, 45
AluBI	AGCT	2 cut(s)	105, 176
AluI	AGCT	2 cut(s)	105, 176
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	1 cut(s)	294
ApoI	RAATTY	1 cut(s)	189
ArsI	GACNNNNNNTTYG	2 cut(s)	49, 81
AspLEI	GCGC	1 cut(s)	10
BalI	TGGCCA	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	91
BbsI	GAAGAC	2 cut(s)	57, 63
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	2 cut(s)	33, 47
BcoDI	GTCTC	1 cut(s)	47
BfoI	RGCGCY	1 cut(s)	11
Bme1390I	CCNGG	2 cut(s)	33, 47
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	2 cut(s)	33, 47
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	2 cut(s)	57, 63
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	32, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	264
BseBI	CCWGG	2 cut(s)	33, 47
BseDI	CCNNGG	2 cut(s)	32, 95
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	264
BseYI	CCCAGC	1 cut(s)	105
BshFI	GGCC	1 cut(s)	296
BshNI	GGYRCC	1 cut(s)	91
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	47
BsmBI	CGTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	296
Bsp143I	GATC	2 cut(s)	162, 202
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	274
BspHI	TCATGA	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	1 cut(s)	197
BspQI	GCTCTTC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	264
BssECI	CCNNGG	2 cut(s)	32, 95
BssMI	GATC	2 cut(s)	162, 202
BssNI	GRCGYC	1 cut(s)	59
Bst2UI	CCWGG	2 cut(s)	33, 47
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	152
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	165, 205
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	2 cut(s)	162, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNI	CCWGG	2 cut(s)	33, 47
BstSCI	CCNGG	2 cut(s)	31, 45
BstV2I	GAAGAC	2 cut(s)	57, 63
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	296
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	318
CfoI	GCGC	1 cut(s)	10
CsiI	ACCWGGT	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	4 cut(s)	132, 298, 310, 319
CviJI	RGCY	5 cut(s)	81, 105, 118, 176, 296
CviKI_1	RGCY	5 cut(s)	81, 105, 118, 176, 296
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	2 cut(s)	164, 204
DpnII	GATC	2 cut(s)	162, 202
DrdI	GACNNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	31, 45
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	4 cut(s)	135, 301, 313, 322
FaiI	YATR	8 cut(s)	23, 42, 125, 133, 299, 304, 311, 320
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	4 cut(s)	131, 297, 309, 318
FokI	GGATG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	9
GsaI	CCCAGC	1 cut(s)	109
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	296
HhaI	GCGC	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	135, 301, 313, 322
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	1 cut(s)	269
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	319
Hpy99I	CGWCG	2 cut(s)	61, 64
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	1 cut(s)	309
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	4 cut(s)	135, 301, 313, 322
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	162, 202
LguI	GCTCTTC	1 cut(s)	125
LpnPI	CCDG	8 cut(s)	18, 32, 45, 59, 91, 168, 277, 278
LweI	GCATC	1 cut(s)	223
MabI	ACCWGGT	1 cut(s)	45
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	2 cut(s)	164, 204
MboI	GATC	2 cut(s)	162, 202
MboII	GAAGA	5 cut(s)	38, 57, 63, 112, 264
MflI	RGATCY	1 cut(s)	202
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	3 cut(s)	86, 189, 244
MluNI	TGGCCA	1 cut(s)	296
MnlI	CCTC	3 cut(s)	137, 277, 315
Mox20I	TGGCCA	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	296
Msp20I	TGGCCA	1 cut(s)	296
MspR9I	CCNGG	2 cut(s)	33, 47
MvaI	CCWGG	2 cut(s)	33, 47
MwoI	GCNNNNNNNGC	1 cut(s)	298
NdeII	GATC	2 cut(s)	162, 202
NlaIII	CATG	4 cut(s)	135, 301, 313, 322
NlaIV	GGNNCC	1 cut(s)	93
NmeAIII	GCCGAG	1 cut(s)	275
PagI	TCATGA	1 cut(s)	318
PciSI	GCTCTTC	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	269
PflFI	GACNNNGTC	2 cut(s)	58, 61
PflMI	CCANNNNNTGG	1 cut(s)	88
Psp6I	CCWGG	2 cut(s)	31, 45
PspFI	CCCAGC	1 cut(s)	105
PspGI	CCWGG	2 cut(s)	31, 45
PspN4I	GGNNCC	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	202
PsyI	GACNNNGTC	2 cut(s)	58, 61
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SapI	GCTCTTC	1 cut(s)	125
Sau3AI	GATC	2 cut(s)	162, 202
ScrFI	CCNGG	2 cut(s)	33, 47
SetI	ASST	5 cut(s)	51, 62, 107, 178, 326
SexAI	ACCWGGT	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	223
Sse9I	AATT	3 cut(s)	86, 189, 244
StyD4I	CCNGG	2 cut(s)	31, 45
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	2 cut(s)	165, 186
TasI	AATT	3 cut(s)	86, 189, 244
TfiI	GAWTC	1 cut(s)	269
TscAI	CASTG	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	112
TspRI	CASTG	1 cut(s)	271
Tth111I	GACNNNGTC	2 cut(s)	58, 61
Van91I	CCANNNNNTGG	1 cut(s)	88
XapI	RAATTY	1 cut(s)	189
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.